Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P06_pT_F14
         (315 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z92775-3|CAB62778.2|  396|Caenorhabditis elegans Hypothetical pr...    27   3.8  
AB070577-1|BAC66472.1|  396|Caenorhabditis elegans L-3,4-dihydro...    27   3.8  
AF016656-4|AAB66039.3|  429|Caenorhabditis elegans Hypothetical ...    26   6.6  
U41543-6|AAB37023.1| 2018|Caenorhabditis elegans Hypothetical pr...    25   8.7  
AF078790-17|AAC26928.1|   89|Caenorhabditis elegans Hypothetical...    25   8.7  

>Z92775-3|CAB62778.2|  396|Caenorhabditis elegans Hypothetical
           protein C06H5.7 protein.
          Length = 396

 Score = 26.6 bits (56), Expect = 3.8
 Identities = 12/34 (35%), Positives = 21/34 (61%)
 Frame = -1

Query: 279 KELTQPKMYKFTILFLVLACFIMAEAQLTFTSSW 178
           + L    +Y FTI+  V+ CF + +AQ  F++S+
Sbjct: 202 RNLMTASVYCFTIIVFVVTCFFIRKAQ-NFSNSF 234


>AB070577-1|BAC66472.1|  396|Caenorhabditis elegans
           L-3,4-dihydroxyphenylalanine receptorprotein.
          Length = 396

 Score = 26.6 bits (56), Expect = 3.8
 Identities = 12/34 (35%), Positives = 21/34 (61%)
 Frame = -1

Query: 279 KELTQPKMYKFTILFLVLACFIMAEAQLTFTSSW 178
           + L    +Y FTI+  V+ CF + +AQ  F++S+
Sbjct: 202 RNLMTASVYCFTIIVFVVTCFFIRKAQ-NFSNSF 234


>AF016656-4|AAB66039.3|  429|Caenorhabditis elegans Hypothetical
           protein C35A11.1 protein.
          Length = 429

 Score = 25.8 bits (54), Expect = 6.6
 Identities = 11/30 (36%), Positives = 18/30 (60%)
 Frame = -2

Query: 164 LPSPALCPAGTMNPWRLFINLFRMKLKNSC 75
           L + A+C  GTM  + ++I  F ++  NSC
Sbjct: 71  LTAVAVCDIGTMASYLIYIIHFVLRRNNSC 100


>U41543-6|AAB37023.1| 2018|Caenorhabditis elegans Hypothetical
           protein F46H5.4 protein.
          Length = 2018

 Score = 25.4 bits (53), Expect = 8.7
 Identities = 13/31 (41%), Positives = 20/31 (64%), Gaps = 5/31 (16%)
 Frame = -3

Query: 313 NELISSCFEVTQRTNSA-----KNVQIHDSI 236
           N LISS  E  +RT+SA     KN+++H+ +
Sbjct: 893 NSLISSMIEHVERTHSAVNTGTKNIRLHECL 923


>AF078790-17|AAC26928.1|   89|Caenorhabditis elegans Hypothetical
           protein F36H12.1 protein.
          Length = 89

 Score = 25.4 bits (53), Expect = 8.7
 Identities = 13/32 (40%), Positives = 20/32 (62%), Gaps = 4/32 (12%)
 Frame = -1

Query: 240 LFLVLACFI----MAEAQLTFTSSWGGKRAAI 157
           L++VL CF+    ++  Q+TFT  W  KRA +
Sbjct: 3   LYVVL-CFLVLLGLSAGQMTFTDQWTKKRATL 33


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,329,235
Number of Sequences: 27780
Number of extensions: 149081
Number of successful extensions: 319
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 313
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 319
length of database: 12,740,198
effective HSP length: 71
effective length of database: 10,767,818
effective search space used: 355337994
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)