Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P06_pT_F11
         (738 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U40029-1|AAA81123.3|  360|Caenorhabditis elegans Serpentine rece...    32   0.49 
AL021175-1|CAA15965.1|  307|Caenorhabditis elegans Hypothetical ...    29   3.4  
Z81575-10|CAB04640.1|  338|Caenorhabditis elegans Hypothetical p...    28   6.0  

>U40029-1|AAA81123.3|  360|Caenorhabditis elegans Serpentine
           receptor, class e (epsilon)protein 39 protein.
          Length = 360

 Score = 31.9 bits (69), Expect = 0.49
 Identities = 19/59 (32%), Positives = 28/59 (47%), Gaps = 3/59 (5%)
 Frame = -2

Query: 563 CTVIICMTHNMMTRLLCIMTNEIHIFVTNENVSKVPHLSCTFFYFF---TSIVIDKRMN 396
           CT ++ +TH     L C+ T EI  F T   +S V  +     YF     +I I KR++
Sbjct: 167 CTTLLLLTHTATFLLSCLATCEILNFTTGVAISGVFIVGAVVIYFIILHINISIQKRLD 225


>AL021175-1|CAA15965.1|  307|Caenorhabditis elegans Hypothetical
           protein Y6E2A.1 protein.
          Length = 307

 Score = 29.1 bits (62), Expect = 3.4
 Identities = 21/72 (29%), Positives = 34/72 (47%)
 Frame = -1

Query: 453 FIMYIFLFFYFDSYRQANELKSIFKTSPRELHFYLMK*SLLEQ*LQLVIFYFFHSKSIFI 274
           F +   L+F   +Y+    L SI     RE+   L + +L+ Q     IF +F    +F+
Sbjct: 172 FTLSAILYFGMQTYKHLYRLSSIAGLDNREIQNQLFR-TLVVQTAIPFIFMYFPVSVMFL 230

Query: 273 LTR*LFGTKIRQ 238
           L   LFG K+ +
Sbjct: 231 LP--LFGIKVEE 240


>Z81575-10|CAB04640.1|  338|Caenorhabditis elegans Hypothetical
           protein R08H2.13 protein.
          Length = 338

 Score = 28.3 bits (60), Expect = 6.0
 Identities = 17/57 (29%), Positives = 29/57 (50%), Gaps = 4/57 (7%)
 Frame = -1

Query: 456 AFIMYI----FLFFYFDSYRQANELKSIFKTSPRELHFYLMK*SLLEQ*LQLVIFYF 298
           AF M+I      +F  ++YR  N++ SI     REL   L +  +++  + +V  YF
Sbjct: 213 AFTMFITNTLLTYFGIETYRHLNKIGSIAGIEYRELQRQLFRTLVIQTAIPMVFMYF 269


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,734,340
Number of Sequences: 27780
Number of extensions: 284840
Number of successful extensions: 562
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 555
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 562
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1735436670
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)