Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P06_pT_F09
         (442 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AM292340-1|CAL23152.1|  355|Tribolium castaneum gustatory recept...    24   0.74 
AY887136-1|AAW78361.1|  580|Tribolium castaneum vasa RNA helicas...    21   5.2  
AY800247-1|AAV66724.1|  790|Tribolium castaneum pangolin protein.      21   5.2  
AY800246-1|AAV66723.1|  682|Tribolium castaneum pangolin protein.      21   5.2  
AF317551-1|AAG39634.1|  312|Tribolium castaneum distal-less prot...    21   6.9  
AF225975-2|AAF74116.1|  302|Tribolium castaneum Tc-tailless prot...    21   6.9  
AF225975-1|AAF74117.1|  256|Tribolium castaneum unknown protein.       21   6.9  
AY584475-1|AAS93634.1|  209|Tribolium castaneum homothorax protein.    20   9.1  
AM292364-1|CAL23176.2|  353|Tribolium castaneum gustatory recept...    20   9.1  
AJ518941-1|CAD57735.1|  456|Tribolium castaneum homothorax protein.    20   9.1  

>AM292340-1|CAL23152.1|  355|Tribolium castaneum gustatory receptor
           candidate 19 protein.
          Length = 355

 Score = 23.8 bits (49), Expect = 0.74
 Identities = 9/29 (31%), Positives = 17/29 (58%)
 Frame = +2

Query: 149 YLYLYVQYELCSFEFVYNFVVFKMTCVTY 235
           ++   V + LC++ F Y F++  + CV Y
Sbjct: 89  FIIFTVHFLLCTYYFYYAFII--LLCVYY 115



 Score = 21.4 bits (43), Expect = 3.9
 Identities = 8/22 (36%), Positives = 11/22 (50%)
 Frame = +2

Query: 149 YLYLYVQYELCSFEFVYNFVVF 214
           Y Y      LC + F Y F++F
Sbjct: 102 YFYYAFIILLCVYYFYYAFIIF 123


>AY887136-1|AAW78361.1|  580|Tribolium castaneum vasa RNA helicase
           protein.
          Length = 580

 Score = 21.0 bits (42), Expect = 5.2
 Identities = 8/16 (50%), Positives = 9/16 (56%)
 Frame = -1

Query: 349 GXAGGRQGDSPGTGGD 302
           G  GGR GD    GG+
Sbjct: 94  GRGGGRDGDRGDGGGE 109


>AY800247-1|AAV66724.1|  790|Tribolium castaneum pangolin protein.
          Length = 790

 Score = 21.0 bits (42), Expect = 5.2
 Identities = 9/12 (75%), Positives = 9/12 (75%)
 Frame = +3

Query: 306 PPVPGLSPCRPP 341
           PP PGLSP  PP
Sbjct: 231 PPHPGLSP-HPP 241


>AY800246-1|AAV66723.1|  682|Tribolium castaneum pangolin protein.
          Length = 682

 Score = 21.0 bits (42), Expect = 5.2
 Identities = 9/12 (75%), Positives = 9/12 (75%)
 Frame = +3

Query: 306 PPVPGLSPCRPP 341
           PP PGLSP  PP
Sbjct: 123 PPHPGLSP-HPP 133


>AF317551-1|AAG39634.1|  312|Tribolium castaneum distal-less
           protein.
          Length = 312

 Score = 20.6 bits (41), Expect = 6.9
 Identities = 12/29 (41%), Positives = 14/29 (48%)
 Frame = +2

Query: 245 HGCTKRFVNIKWSDKEDAPVPTRPRAVPL 331
           H    R V    SD+  A + T PRA PL
Sbjct: 219 HDGRGRIVERFTSDRVHAALVTSPRARPL 247


>AF225975-2|AAF74116.1|  302|Tribolium castaneum Tc-tailless
           protein.
          Length = 302

 Score = 20.6 bits (41), Expect = 6.9
 Identities = 9/25 (36%), Positives = 12/25 (48%)
 Frame = +3

Query: 270 ILNGQTRKTRPSPPVPGLSPCRPPA 344
           +LN    K  P+P +    P  PPA
Sbjct: 143 VLNLTMPKYEPNPSIIDPGPALPPA 167


>AF225975-1|AAF74117.1|  256|Tribolium castaneum unknown protein.
          Length = 256

 Score = 20.6 bits (41), Expect = 6.9
 Identities = 7/21 (33%), Positives = 14/21 (66%)
 Frame = +3

Query: 255 QNALLILNGQTRKTRPSPPVP 317
           ++A ++ NG+    +PSP +P
Sbjct: 158 ESASVMTNGRIHGIQPSPTLP 178


>AY584475-1|AAS93634.1|  209|Tribolium castaneum homothorax protein.
          Length = 209

 Score = 20.2 bits (40), Expect = 9.1
 Identities = 9/20 (45%), Positives = 11/20 (55%)
 Frame = -1

Query: 121 THTQACSTVSLEPCVSWLSY 62
           +HT   ST  + P  S LSY
Sbjct: 62  SHTDGASTPDVRPPSSSLSY 81


>AM292364-1|CAL23176.2|  353|Tribolium castaneum gustatory receptor
           candidate 43 protein.
          Length = 353

 Score = 20.2 bits (40), Expect = 9.1
 Identities = 9/40 (22%), Positives = 16/40 (40%)
 Frame = +2

Query: 110 LRVRSSGSRTRQSYLYLYVQYELCSFEFVYNFVVFKMTCV 229
           L+   S ++ +++  Y Y  Y        Y  V+    CV
Sbjct: 98  LKNLESCAKIKKTKRYCYYYYAFFGVHLAYGVVIIYSICV 137


>AJ518941-1|CAD57735.1|  456|Tribolium castaneum homothorax protein.
          Length = 456

 Score = 20.2 bits (40), Expect = 9.1
 Identities = 9/20 (45%), Positives = 11/20 (55%)
 Frame = -1

Query: 121 THTQACSTVSLEPCVSWLSY 62
           +HT   ST  + P  S LSY
Sbjct: 218 SHTDGASTPDVRPPSSSLSY 237


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 96,603
Number of Sequences: 336
Number of extensions: 2205
Number of successful extensions: 11
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 11
length of database: 122,585
effective HSP length: 52
effective length of database: 105,113
effective search space used:  9880622
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.2 bits)