Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P06_pT_F09
(442 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAP7G5.03 |||conjugation protein |Schizosaccharomyces pombe|chr... 30 0.18
SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr 1... 29 0.42
SPBC4B4.04 |||translation initiation factor eIF2A |Schizosacchar... 28 0.55
SPBC11B10.05c |rsp1||random septum position protein Rsp1|Schizos... 28 0.73
SPBC13E7.09 |vrp1||verprolin|Schizosaccharomyces pombe|chr 2|||M... 27 1.3
SPAPYUG7.03c |mid2||anillin homologue Mid2|Schizosaccharomyces p... 26 3.0
SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual 26 3.0
SPAC16E8.01 |||cytoskeletal protein binding protein Sla1 family ... 25 3.9
SPBC146.13c |myo1||myosin type I|Schizosaccharomyces pombe|chr 2... 25 5.2
SPBC1683.09c |frp1||ferric-chelate reductase Frp1|Schizosaccharo... 25 5.2
SPAC1A6.07 |||sequence orphan|Schizosaccharomyces pombe|chr 1|||... 25 6.8
SPBC2D10.10c |fib1|fib|fibrillarin|Schizosaccharomyces pombe|chr... 25 6.8
SPAC1F3.05 |||adaptin |Schizosaccharomyces pombe|chr 1|||Manual 25 6.8
SPBC409.14c |mrps17||mitochondrial ribosomal protein subunit S17... 25 6.8
SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr 3|||... 24 9.0
SPBC21D10.12 |hob1||BAR adaptor protein Hob1|Schizosaccharomyces... 24 9.0
>SPAP7G5.03 |||conjugation protein |Schizosaccharomyces pombe|chr
1|||Manual
Length = 703
Score = 29.9 bits (64), Expect = 0.18
Identities = 11/30 (36%), Positives = 17/30 (56%)
Frame = +2
Query: 287 KEDAPVPTRPRAVPLPSPGRPPDVPPNDVH 376
KE+ +P + A P+ RPP +PP + H
Sbjct: 607 KENITLPVQSLAFPVTKSCRPPPIPPRESH 636
>SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr
1|||Manual
Length = 574
Score = 28.7 bits (61), Expect = 0.42
Identities = 11/23 (47%), Positives = 12/23 (52%)
Frame = +2
Query: 299 PVPTRPRAVPLPSPGRPPDVPPN 367
PVPT P P P PP PP+
Sbjct: 416 PVPTPPSLPPSAPPSLPPSAPPS 438
Score = 27.1 bits (57), Expect = 1.3
Identities = 11/29 (37%), Positives = 13/29 (44%)
Frame = +3
Query: 276 NGQTRKTRPSPPVPGLSPCRPPAXPRMSP 362
N T P P P L P PP+ P +P
Sbjct: 408 NASRTSTPPVPTPPSLPPSAPPSLPPSAP 436
>SPBC4B4.04 |||translation initiation factor eIF2A
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 576
Score = 28.3 bits (60), Expect = 0.55
Identities = 13/35 (37%), Positives = 17/35 (48%)
Frame = +3
Query: 258 NALLILNGQTRKTRPSPPVPGLSPCRPPAXPRMSP 362
N L+ N T + PSPP P S + A P + P
Sbjct: 412 NPTLLQNALTSASLPSPPTPHASASKLAAKPSVKP 446
>SPBC11B10.05c |rsp1||random septum position protein
Rsp1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 494
Score = 27.9 bits (59), Expect = 0.73
Identities = 15/49 (30%), Positives = 25/49 (51%)
Frame = +2
Query: 260 RFVNIKWSDKEDAPVPTRPRAVPLPSPGRPPDVPPNDVHE*LNTYXNVY 406
R + I+ D E A V +P +VP PP+ P N + +++Y N +
Sbjct: 363 RSLAIEGDDDEVAKVLPKPPSVPTIQAPIPPEAPRNLTNASVDSYLNSF 411
>SPBC13E7.09 |vrp1||verprolin|Schizosaccharomyces pombe|chr
2|||Manual
Length = 309
Score = 27.1 bits (57), Expect = 1.3
Identities = 14/25 (56%), Positives = 15/25 (60%), Gaps = 2/25 (8%)
Frame = +2
Query: 296 APVPTRPRAVPLPS--PGRPPDVPP 364
APV + P A LPS P PP VPP
Sbjct: 179 APVKSPPSAPSLPSAVPPMPPKVPP 203
>SPAPYUG7.03c |mid2||anillin homologue Mid2|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 704
Score = 25.8 bits (54), Expect = 3.0
Identities = 9/17 (52%), Positives = 12/17 (70%)
Frame = +2
Query: 290 EDAPVPTRPRAVPLPSP 340
E+AP+P P+ V LP P
Sbjct: 306 ENAPIPLLPKVVSLPDP 322
>SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1611
Score = 25.8 bits (54), Expect = 3.0
Identities = 11/23 (47%), Positives = 13/23 (56%)
Frame = +2
Query: 299 PVPTRPRAVPLPSPGRPPDVPPN 367
P P+ VP PS G PP PP+
Sbjct: 1192 PPPSEAPPVPKPSVGVPPVPPPS 1214
>SPAC16E8.01 |||cytoskeletal protein binding protein Sla1 family
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1420
Score = 25.4 bits (53), Expect = 3.9
Identities = 12/43 (27%), Positives = 19/43 (44%), Gaps = 1/43 (2%)
Frame = +2
Query: 236 LNPHGCTKRFVNIKWSDKEDAP-VPTRPRAVPLPSPGRPPDVP 361
+ P T+ + S++ P P+RPR P+P P P
Sbjct: 955 VEPARVTESMNKMNISEEAKKPEAPSRPRTAPIPEPEEQKKAP 997
>SPBC146.13c |myo1||myosin type I|Schizosaccharomyces pombe|chr
2|||Manual
Length = 1217
Score = 25.0 bits (52), Expect = 5.2
Identities = 13/33 (39%), Positives = 18/33 (54%), Gaps = 3/33 (9%)
Frame = +2
Query: 287 KEDAPVP---TRPRAVPLPSPGRPPDVPPNDVH 376
K APV ++P AVP P P P +V D++
Sbjct: 1079 KPSAPVANNVSKPSAVPPPPPPPPAEVEKKDLY 1111
>SPBC1683.09c |frp1||ferric-chelate reductase
Frp1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 564
Score = 25.0 bits (52), Expect = 5.2
Identities = 9/33 (27%), Positives = 17/33 (51%)
Frame = +2
Query: 140 RQSYLYLYVQYELCSFEFVYNFVVFKMTCVTYL 238
R+ Y + +V + +CS F+ + CV Y+
Sbjct: 215 RRFYEWFFVLHHMCSIGFLITIWLHHRRCVVYM 247
>SPAC1A6.07 |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 636
Score = 24.6 bits (51), Expect = 6.8
Identities = 12/25 (48%), Positives = 15/25 (60%), Gaps = 1/25 (4%)
Frame = +2
Query: 296 APVPTRPRA-VPLPSPGRPPDVPPN 367
AP R R+ V LP+P PP +P N
Sbjct: 75 APPSLRNRSSVYLPTPAGPPQIPVN 99
>SPBC2D10.10c |fib1|fib|fibrillarin|Schizosaccharomyces pombe|chr
2|||Manual
Length = 305
Score = 24.6 bits (51), Expect = 6.8
Identities = 11/20 (55%), Positives = 11/20 (55%)
Frame = -1
Query: 364 RGDIRGXAGGRQGDSPGTGG 305
RG RG GGR G G GG
Sbjct: 40 RGGARGGRGGRGGARGGRGG 59
>SPAC1F3.05 |||adaptin |Schizosaccharomyces pombe|chr 1|||Manual
Length = 510
Score = 24.6 bits (51), Expect = 6.8
Identities = 12/32 (37%), Positives = 16/32 (50%)
Frame = +2
Query: 329 LPSPGRPPDVPPNDVHE*LNTYXNVYSHIHNG 424
+PSP P +VP N L++ N S NG
Sbjct: 345 VPSPSLPTNVPANQSLSMLSSLSNSMSSTSNG 376
>SPBC409.14c |mrps17||mitochondrial ribosomal protein subunit
S17|Schizosaccharomyces pombe|chr 2|||Manual
Length = 90
Score = 24.6 bits (51), Expect = 6.8
Identities = 12/20 (60%), Positives = 12/20 (60%)
Frame = +1
Query: 94 IQCCRPACAFKRFAYTAILS 153
IQ CRP A KRF ILS
Sbjct: 57 IQPCRPRSATKRFEIIKILS 76
>SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr
3|||Manual
Length = 1461
Score = 24.2 bits (50), Expect = 9.0
Identities = 9/21 (42%), Positives = 11/21 (52%)
Frame = +3
Query: 300 PSPPVPGLSPCRPPAXPRMSP 362
P PP PG++ PP P P
Sbjct: 763 PPPPPPGVAGAGPPPPPPPPP 783
>SPBC21D10.12 |hob1||BAR adaptor protein Hob1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 466
Score = 24.2 bits (50), Expect = 9.0
Identities = 11/27 (40%), Positives = 12/27 (44%)
Frame = +2
Query: 296 APVPTRPRAVPLPSPGRPPDVPPNDVH 376
APV AVP+P P P P H
Sbjct: 385 APVAAAAAAVPVPPPAPAPAAAPAAEH 411
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,651,724
Number of Sequences: 5004
Number of extensions: 33533
Number of successful extensions: 112
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 94
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 112
length of database: 2,362,478
effective HSP length: 67
effective length of database: 2,027,210
effective search space used: 160149590
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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