Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P06_pT_F09
(442 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z73910-4|CAA98136.1| 662|Caenorhabditis elegans Hypothetical pr... 32 0.21
Z48367-5|CAE54886.1| 993|Caenorhabditis elegans Hypothetical pr... 30 0.65
Z48367-4|CAA88324.1| 1110|Caenorhabditis elegans Hypothetical pr... 30 0.65
U40802-3|AAM81105.1| 369|Caenorhabditis elegans Dense body prot... 30 0.65
U40802-2|AAM81104.1| 1010|Caenorhabditis elegans Dense body prot... 30 0.65
U40802-1|AAM81106.1| 999|Caenorhabditis elegans Dense body prot... 30 0.65
J04804-1|AAA28002.1| 1010|Caenorhabditis elegans protein ( C.ele... 30 0.65
AC006672-7|AAM98004.1| 668|Caenorhabditis elegans Hypothetical ... 29 1.1
Z83227-3|CAB05726.2| 241|Caenorhabditis elegans Hypothetical pr... 28 2.6
Z66565-6|CAA91483.1| 165|Caenorhabditis elegans Hypothetical pr... 28 2.6
AC024824-3|AAK85501.1| 543|Caenorhabditis elegans Hypothetical ... 28 2.6
U41538-2|AAG00010.1| 997|Caenorhabditis elegans Hypothetical pr... 28 3.5
Z68011-3|CAA92014.2| 821|Caenorhabditis elegans Hypothetical pr... 27 4.6
AF067616-11|AAC19194.2| 627|Caenorhabditis elegans Collagen pro... 27 4.6
Z78013-1|CAB01425.3| 1140|Caenorhabditis elegans Hypothetical pr... 27 6.0
Z70684-11|CAA94604.1| 1141|Caenorhabditis elegans Hypothetical p... 27 6.0
Z70682-10|CAA94588.1| 1141|Caenorhabditis elegans Hypothetical p... 27 6.0
Z68760-2|CAA92995.1| 597|Caenorhabditis elegans Hypothetical pr... 27 6.0
U97404-1|AAB93310.1| 408|Caenorhabditis elegans Innexin protein... 27 6.0
AL110490-7|CAD59175.1| 533|Caenorhabditis elegans Hypothetical ... 27 6.0
AL110490-6|CAB54442.2| 687|Caenorhabditis elegans Hypothetical ... 27 6.0
AC025723-10|AAK29940.1| 691|Caenorhabditis elegans Mammalian fe... 27 6.0
AB073210-1|BAB70473.1| 1141|Caenorhabditis elegans rac effector ... 27 6.0
Z81548-1|CAB04464.1| 1217|Caenorhabditis elegans Hypothetical pr... 27 8.0
Z46676-8|CAB60993.2| 388|Caenorhabditis elegans Hypothetical pr... 27 8.0
U97552-5|AAQ01520.1| 605|Caenorhabditis elegans Hypothetical pr... 27 8.0
U97552-4|AAX55684.1| 666|Caenorhabditis elegans Hypothetical pr... 27 8.0
U97552-3|AAQ01521.1| 663|Caenorhabditis elegans Hypothetical pr... 27 8.0
U58760-5|AAK31464.1| 1076|Caenorhabditis elegans Hypothetical pr... 27 8.0
U46673-6|AAC48149.2| 1382|Caenorhabditis elegans P-glycoprotein ... 27 8.0
U24189-3|AAC47514.1| 398|Caenorhabditis elegans RRM-type RNA bi... 27 8.0
U13644-9|AAB52680.3| 492|Caenorhabditis elegans Cell death abno... 27 8.0
AF061513-1|AAC24362.1| 492|Caenorhabditis elegans candidate ada... 27 8.0
AF047662-4|AAC04444.1| 145|Caenorhabditis elegans Hypothetical ... 27 8.0
>Z73910-4|CAA98136.1| 662|Caenorhabditis elegans Hypothetical
protein M117.4 protein.
Length = 662
Score = 31.9 bits (69), Expect = 0.21
Identities = 14/26 (53%), Positives = 16/26 (61%), Gaps = 1/26 (3%)
Frame = +2
Query: 296 APVPTRPRAVPLPSPGRPPD-VPPND 370
AP P P + P+PS G PP VPP D
Sbjct: 173 APPPVAPLSAPVPSTGAPPSAVPPAD 198
>Z48367-5|CAE54886.1| 993|Caenorhabditis elegans Hypothetical
protein C33B4.3b protein.
Length = 993
Score = 30.3 bits (65), Expect = 0.65
Identities = 14/41 (34%), Positives = 21/41 (51%)
Frame = +2
Query: 242 PHGCTKRFVNIKWSDKEDAPVPTRPRAVPLPSPGRPPDVPP 364
PH C V+++++ + VP P +P S G PP PP
Sbjct: 774 PH-CEPTMVHVEFTPPSTSSVPPPPPPLPPISSGAPPPPPP 813
>Z48367-4|CAA88324.1| 1110|Caenorhabditis elegans Hypothetical
protein C33B4.3a protein.
Length = 1110
Score = 30.3 bits (65), Expect = 0.65
Identities = 14/41 (34%), Positives = 21/41 (51%)
Frame = +2
Query: 242 PHGCTKRFVNIKWSDKEDAPVPTRPRAVPLPSPGRPPDVPP 364
PH C V+++++ + VP P +P S G PP PP
Sbjct: 774 PH-CEPTMVHVEFTPPSTSSVPPPPPPLPPISSGAPPPPPP 813
>U40802-3|AAM81105.1| 369|Caenorhabditis elegans Dense body protein
1, isoform b protein.
Length = 369
Score = 30.3 bits (65), Expect = 0.65
Identities = 18/52 (34%), Positives = 22/52 (42%), Gaps = 1/52 (1%)
Frame = +2
Query: 254 TKRFVNIKWSDKEDAPVPTR-PRAVPLPSPGRPPDVPPNDVHE*LNTYXNVY 406
T ++ K +ED P P R P V L P RPP P D E + Y
Sbjct: 130 TAPIIHNKMIIREDIPAPPRPPPPVELSPPPRPPPPPEYDEEEETRAFWERY 181
>U40802-2|AAM81104.1| 1010|Caenorhabditis elegans Dense body protein
1, isoform a protein.
Length = 1010
Score = 30.3 bits (65), Expect = 0.65
Identities = 18/52 (34%), Positives = 22/52 (42%), Gaps = 1/52 (1%)
Frame = +2
Query: 254 TKRFVNIKWSDKEDAPVPTR-PRAVPLPSPGRPPDVPPNDVHE*LNTYXNVY 406
T ++ K +ED P P R P V L P RPP P D E + Y
Sbjct: 771 TAPIIHNKMIIREDIPAPPRPPPPVELSPPPRPPPPPEYDEEEETRAFWERY 822
>U40802-1|AAM81106.1| 999|Caenorhabditis elegans Dense body protein
1, isoform c protein.
Length = 999
Score = 30.3 bits (65), Expect = 0.65
Identities = 18/52 (34%), Positives = 22/52 (42%), Gaps = 1/52 (1%)
Frame = +2
Query: 254 TKRFVNIKWSDKEDAPVPTR-PRAVPLPSPGRPPDVPPNDVHE*LNTYXNVY 406
T ++ K +ED P P R P V L P RPP P D E + Y
Sbjct: 771 TAPIIHNKMIIREDIPAPPRPPPPVELSPPPRPPPPPEYDEEEETRAFWERY 822
>J04804-1|AAA28002.1| 1010|Caenorhabditis elegans protein (
C.elegans vinculin (deb-1) gene, complete cds. ).
Length = 1010
Score = 30.3 bits (65), Expect = 0.65
Identities = 18/52 (34%), Positives = 22/52 (42%), Gaps = 1/52 (1%)
Frame = +2
Query: 254 TKRFVNIKWSDKEDAPVPTR-PRAVPLPSPGRPPDVPPNDVHE*LNTYXNVY 406
T ++ K +ED P P R P V L P RPP P D E + Y
Sbjct: 771 TAPIIHNKMIIREDIPAPPRPPPPVELSPPPRPPPPPEYDEEEETRAFWERY 822
>AC006672-7|AAM98004.1| 668|Caenorhabditis elegans Hypothetical
protein K08D12.6 protein.
Length = 668
Score = 29.5 bits (63), Expect = 1.1
Identities = 13/22 (59%), Positives = 14/22 (63%)
Frame = +2
Query: 293 DAPVPTRPRAVPLPSPGRPPDV 358
DAPV P AVP P+P PDV
Sbjct: 243 DAPVEQAPVAVPAPAPVAAPDV 264
Score = 26.6 bits (56), Expect = 8.0
Identities = 11/20 (55%), Positives = 12/20 (60%)
Frame = +2
Query: 293 DAPVPTRPRAVPLPSPGRPP 352
DAPV P AVP P+P P
Sbjct: 42 DAPVEQAPVAVPAPAPAAAP 61
Score = 26.6 bits (56), Expect = 8.0
Identities = 11/20 (55%), Positives = 12/20 (60%)
Frame = +2
Query: 293 DAPVPTRPRAVPLPSPGRPP 352
DAPV P AVP P+P P
Sbjct: 107 DAPVEQAPVAVPAPAPAAAP 126
Score = 26.6 bits (56), Expect = 8.0
Identities = 11/20 (55%), Positives = 12/20 (60%)
Frame = +2
Query: 293 DAPVPTRPRAVPLPSPGRPP 352
DAPV P AVP P+P P
Sbjct: 176 DAPVEQAPVAVPAPAPAAAP 195
Score = 26.6 bits (56), Expect = 8.0
Identities = 11/20 (55%), Positives = 12/20 (60%)
Frame = +2
Query: 293 DAPVPTRPRAVPLPSPGRPP 352
DAPV P AVP P+P P
Sbjct: 309 DAPVEQAPVAVPAPAPAAAP 328
Score = 26.6 bits (56), Expect = 8.0
Identities = 11/20 (55%), Positives = 12/20 (60%)
Frame = +2
Query: 293 DAPVPTRPRAVPLPSPGRPP 352
DAPV P AVP P+P P
Sbjct: 435 DAPVEQAPVAVPAPAPAAAP 454
Score = 26.6 bits (56), Expect = 8.0
Identities = 11/20 (55%), Positives = 12/20 (60%)
Frame = +2
Query: 293 DAPVPTRPRAVPLPSPGRPP 352
DAPV P AVP P+P P
Sbjct: 504 DAPVEQAPVAVPAPAPAAAP 523
Score = 26.6 bits (56), Expect = 8.0
Identities = 11/20 (55%), Positives = 12/20 (60%)
Frame = +2
Query: 293 DAPVPTRPRAVPLPSPGRPP 352
DAPV P AVP P+P P
Sbjct: 562 DAPVEQAPVAVPAPAPAAAP 581
Score = 26.6 bits (56), Expect = 8.0
Identities = 11/20 (55%), Positives = 12/20 (60%)
Frame = +2
Query: 293 DAPVPTRPRAVPLPSPGRPP 352
DAPV P AVP P+P P
Sbjct: 626 DAPVEQAPVAVPAPAPAAAP 645
>Z83227-3|CAB05726.2| 241|Caenorhabditis elegans Hypothetical
protein F45B8.3 protein.
Length = 241
Score = 28.3 bits (60), Expect = 2.6
Identities = 11/22 (50%), Positives = 11/22 (50%)
Frame = +3
Query: 300 PSPPVPGLSPCRPPAXPRMSPL 365
P PP P C PP P SPL
Sbjct: 111 PPPPAPAAPCCPPPPPPTPSPL 132
>Z66565-6|CAA91483.1| 165|Caenorhabditis elegans Hypothetical
protein T04F8.8 protein.
Length = 165
Score = 28.3 bits (60), Expect = 2.6
Identities = 16/47 (34%), Positives = 20/47 (42%)
Frame = +2
Query: 290 EDAPVPTRPRAVPLPSPGRPPDVPPNDVHE*LNTYXNVYSHIHNGYV 430
E P P +P P P P P+ P E + N Y+ HN YV
Sbjct: 115 EPQPEP-QPEPQPEPQPEPQPEPHPEPAPEPIVKPYNSYAQPHNSYV 160
>AC024824-3|AAK85501.1| 543|Caenorhabditis elegans Hypothetical
protein Y55B1BR.1 protein.
Length = 543
Score = 28.3 bits (60), Expect = 2.6
Identities = 16/46 (34%), Positives = 22/46 (47%), Gaps = 3/46 (6%)
Frame = +2
Query: 233 YLNPHGCTKRFVNIKWSDKEDA---PVPTRPRAVPLPSPGRPPDVP 361
+L P KRF +++ + P P RP VP SP PD+P
Sbjct: 100 FLKPWSPRKRFSSVETNPGTPRIYLPPPPRPPPVPPLSPPERPDIP 145
>U41538-2|AAG00010.1| 997|Caenorhabditis elegans Hypothetical
protein R04E5.8a protein.
Length = 997
Score = 27.9 bits (59), Expect = 3.5
Identities = 12/27 (44%), Positives = 14/27 (51%), Gaps = 2/27 (7%)
Frame = +2
Query: 299 PVPTR--PRAVPLPSPGRPPDVPPNDV 373
P P R PR P P P PP PP+ +
Sbjct: 165 PSPQRRPPRTPPSPEPRNPPRTPPSPI 191
>Z68011-3|CAA92014.2| 821|Caenorhabditis elegans Hypothetical
protein T21B6.3 protein.
Length = 821
Score = 27.5 bits (58), Expect = 4.6
Identities = 9/25 (36%), Positives = 12/25 (48%)
Frame = -1
Query: 85 PCVSWLSYCDGS*CHYRVAPTSRLR 11
PC W +C+ S C + P R R
Sbjct: 650 PCAEWTEWCEWSGCSSKCGPGQRTR 674
>AF067616-11|AAC19194.2| 627|Caenorhabditis elegans Collagen
protein 99 protein.
Length = 627
Score = 27.5 bits (58), Expect = 4.6
Identities = 14/29 (48%), Positives = 15/29 (51%)
Frame = +2
Query: 293 DAPVPTRPRAVPLPSPGRPPDVPPNDVHE 379
DAP PT P +PLP P NDV E
Sbjct: 575 DAPCPTGPDGLPLPYCSWKPMDGKNDVWE 603
>Z78013-1|CAB01425.3| 1140|Caenorhabditis elegans Hypothetical
protein F15B9.4 protein.
Length = 1140
Score = 27.1 bits (57), Expect = 6.0
Identities = 13/37 (35%), Positives = 19/37 (51%), Gaps = 5/37 (13%)
Frame = +3
Query: 273 LNGQTRKTRPSPPVPGLSPCR-----PPAXPRMSPLT 368
+NG P PP+ G++P PP P M+PL+
Sbjct: 496 INGHAPNPPPPPPLLGIAPMSTNAPPPPPMPGMAPLS 532
>Z70684-11|CAA94604.1| 1141|Caenorhabditis elegans Hypothetical
protein F28D1.10 protein.
Length = 1141
Score = 27.1 bits (57), Expect = 6.0
Identities = 12/39 (30%), Positives = 21/39 (53%)
Frame = -1
Query: 121 THTQACSTVSLEPCVSWLSYCDGS*CHYRVAPTSRLRNV 5
T T AC +SL+ W+ +C G+ CH + +R++
Sbjct: 243 TETIACEYLSLDVIDRWIVFC-GTVCHSTLLNDDNIRHM 280
>Z70682-10|CAA94588.1| 1141|Caenorhabditis elegans Hypothetical
protein F28D1.10 protein.
Length = 1141
Score = 27.1 bits (57), Expect = 6.0
Identities = 12/39 (30%), Positives = 21/39 (53%)
Frame = -1
Query: 121 THTQACSTVSLEPCVSWLSYCDGS*CHYRVAPTSRLRNV 5
T T AC +SL+ W+ +C G+ CH + +R++
Sbjct: 243 TETIACEYLSLDVIDRWIVFC-GTVCHSTLLNDDNIRHM 280
>Z68760-2|CAA92995.1| 597|Caenorhabditis elegans Hypothetical
protein F36H1.3 protein.
Length = 597
Score = 27.1 bits (57), Expect = 6.0
Identities = 11/23 (47%), Positives = 13/23 (56%)
Frame = +2
Query: 296 APVPTRPRAVPLPSPGRPPDVPP 364
APV T P +PSP + P PP
Sbjct: 497 APVHTPPAPPAIPSPAKLPTAPP 519
>U97404-1|AAB93310.1| 408|Caenorhabditis elegans Innexin protein 12
protein.
Length = 408
Score = 27.1 bits (57), Expect = 6.0
Identities = 18/54 (33%), Positives = 29/54 (53%), Gaps = 3/54 (5%)
Frame = +2
Query: 44 TLTPIA--IGEPRHARLQRYSAAGLRVRSSGSRTRQSYLYLYVQYEL-CSFEFV 196
T+T IA I + RH L +G + R++GS SYL++ + + F+FV
Sbjct: 164 TITTIAGYISQKRHRNLIVKQLSGFQNRANGSAVITSYLFMKALFLINVLFQFV 217
>AL110490-7|CAD59175.1| 533|Caenorhabditis elegans Hypothetical
protein Y48B6A.6b protein.
Length = 533
Score = 27.1 bits (57), Expect = 6.0
Identities = 11/22 (50%), Positives = 13/22 (59%)
Frame = +2
Query: 299 PVPTRPRAVPLPSPGRPPDVPP 364
P+PT P+ V P RP VPP
Sbjct: 271 PLPTIPQEVQSPPSPRPTSVPP 292
>AL110490-6|CAB54442.2| 687|Caenorhabditis elegans Hypothetical
protein Y48B6A.6a protein.
Length = 687
Score = 27.1 bits (57), Expect = 6.0
Identities = 11/22 (50%), Positives = 13/22 (59%)
Frame = +2
Query: 299 PVPTRPRAVPLPSPGRPPDVPP 364
P+PT P+ V P RP VPP
Sbjct: 271 PLPTIPQEVQSPPSPRPTSVPP 292
>AC025723-10|AAK29940.1| 691|Caenorhabditis elegans Mammalian fe65
homolog protein1, isoform a protein.
Length = 691
Score = 27.1 bits (57), Expect = 6.0
Identities = 10/26 (38%), Positives = 16/26 (61%)
Frame = +3
Query: 285 TRKTRPSPPVPGLSPCRPPAXPRMSP 362
T + +P PPV ++P R P+ P + P
Sbjct: 288 TIQRQPPPPVRDVTPARSPSPPPLPP 313
>AB073210-1|BAB70473.1| 1141|Caenorhabditis elegans rac effector
protein.
Length = 1141
Score = 27.1 bits (57), Expect = 6.0
Identities = 12/39 (30%), Positives = 21/39 (53%)
Frame = -1
Query: 121 THTQACSTVSLEPCVSWLSYCDGS*CHYRVAPTSRLRNV 5
T T AC +SL+ W+ +C G+ CH + +R++
Sbjct: 243 TETIACEYLSLDVIDRWIVFC-GTVCHSTLLNDDNIRHM 280
>Z81548-1|CAB04464.1| 1217|Caenorhabditis elegans Hypothetical
protein F54F12.1 protein.
Length = 1217
Score = 26.6 bits (56), Expect = 8.0
Identities = 11/26 (42%), Positives = 13/26 (50%)
Frame = +2
Query: 284 DKEDAPVPTRPRAVPLPSPGRPPDVP 361
D AP+P P VP P+P P P
Sbjct: 774 DDPPAPLPVLPPVVPAPAPVVPAPAP 799
>Z46676-8|CAB60993.2| 388|Caenorhabditis elegans Hypothetical
protein C08B11.5 protein.
Length = 388
Score = 26.6 bits (56), Expect = 8.0
Identities = 10/17 (58%), Positives = 12/17 (70%)
Frame = +3
Query: 300 PSPPVPGLSPCRPPAXP 350
P PP PG++P RPP P
Sbjct: 276 PMPPTPGMTP-RPPPPP 291
>U97552-5|AAQ01520.1| 605|Caenorhabditis elegans Hypothetical
protein W05H7.4a protein.
Length = 605
Score = 26.6 bits (56), Expect = 8.0
Identities = 13/28 (46%), Positives = 16/28 (57%), Gaps = 4/28 (14%)
Frame = +2
Query: 302 VPTRPRAVP----LPSPGRPPDVPPNDV 373
VP+ P + LP PGRPP V P D+
Sbjct: 201 VPSEPTTLATIRDLPLPGRPPRVRPQDL 228
>U97552-4|AAX55684.1| 666|Caenorhabditis elegans Hypothetical
protein W05H7.4e protein.
Length = 666
Score = 26.6 bits (56), Expect = 8.0
Identities = 13/28 (46%), Positives = 16/28 (57%), Gaps = 4/28 (14%)
Frame = +2
Query: 302 VPTRPRAVP----LPSPGRPPDVPPNDV 373
VP+ P + LP PGRPP V P D+
Sbjct: 262 VPSEPTTLATIRDLPLPGRPPRVRPQDL 289
>U97552-3|AAQ01521.1| 663|Caenorhabditis elegans Hypothetical
protein W05H7.4b protein.
Length = 663
Score = 26.6 bits (56), Expect = 8.0
Identities = 13/28 (46%), Positives = 16/28 (57%), Gaps = 4/28 (14%)
Frame = +2
Query: 302 VPTRPRAVP----LPSPGRPPDVPPNDV 373
VP+ P + LP PGRPP V P D+
Sbjct: 259 VPSEPTTLATIRDLPLPGRPPRVRPQDL 286
>U58760-5|AAK31464.1| 1076|Caenorhabditis elegans Hypothetical
protein C27A2.1 protein.
Length = 1076
Score = 26.6 bits (56), Expect = 8.0
Identities = 12/29 (41%), Positives = 17/29 (58%)
Frame = +2
Query: 227 VTYLNPHGCTKRFVNIKWSDKEDAPVPTR 313
V Y+ HGCT+ +V I +DK+ P R
Sbjct: 80 VEYIR-HGCTEGYVEIAIADKQKGPQVVR 107
>U46673-6|AAC48149.2| 1382|Caenorhabditis elegans P-glycoprotein
related protein 10 protein.
Length = 1382
Score = 26.6 bits (56), Expect = 8.0
Identities = 15/51 (29%), Positives = 26/51 (50%)
Frame = +3
Query: 66 ESHDTHGSNDTVLQACVCVQAVRVHGNLIFICMYNTSYVRLNSSITL*FSK 218
+SH + D + C+Q + L+F C Y+ +Y+ + +ITL F K
Sbjct: 1017 QSHFYNVFCDALKPVSQCMQKQSLISALVFACQYSFTYILI--AITLHFGK 1065
>U24189-3|AAC47514.1| 398|Caenorhabditis elegans RRM-type RNA
binding protein protein.
Length = 398
Score = 26.6 bits (56), Expect = 8.0
Identities = 10/17 (58%), Positives = 12/17 (70%)
Frame = +3
Query: 300 PSPPVPGLSPCRPPAXP 350
P PP PG++P RPP P
Sbjct: 286 PMPPTPGMTP-RPPPPP 301
>U13644-9|AAB52680.3| 492|Caenorhabditis elegans Cell death
abnormality protein 6 protein.
Length = 492
Score = 26.6 bits (56), Expect = 8.0
Identities = 11/24 (45%), Positives = 13/24 (54%)
Frame = +3
Query: 294 TRPSPPVPGLSPCRPPAXPRMSPL 365
T PS P P + P RPPA P+
Sbjct: 309 TSPSGPAPSIPPPRPPALAPPPPV 332
>AF061513-1|AAC24362.1| 492|Caenorhabditis elegans candidate
adaptor protein CED-6 protein.
Length = 492
Score = 26.6 bits (56), Expect = 8.0
Identities = 11/24 (45%), Positives = 13/24 (54%)
Frame = +3
Query: 294 TRPSPPVPGLSPCRPPAXPRMSPL 365
T PS P P + P RPPA P+
Sbjct: 309 TSPSGPAPSIPPPRPPALAPPPPV 332
>AF047662-4|AAC04444.1| 145|Caenorhabditis elegans Hypothetical
protein T22B2.6 protein.
Length = 145
Score = 26.6 bits (56), Expect = 8.0
Identities = 12/29 (41%), Positives = 14/29 (48%)
Frame = +2
Query: 287 KEDAPVPTRPRAVPLPSPGRPPDVPPNDV 373
++D P P P VP P P P P DV
Sbjct: 76 RDDLPTPP-PETVPTPVPEVPTTTTPTDV 103
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,449,879
Number of Sequences: 27780
Number of extensions: 206623
Number of successful extensions: 1210
Number of sequences better than 10.0: 34
Number of HSP's better than 10.0 without gapping: 962
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1183
length of database: 12,740,198
effective HSP length: 75
effective length of database: 10,656,698
effective search space used: 756625558
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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