Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P06_pT_F08
(826 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC23H4.03c |erv25||COPII-coated vesicle component Erv25 |Schiz... 89 9e-19
SPCC24B10.17 |emp24||COPII-coated vesicle component Emp24 |Schiz... 64 2e-11
SPBC16E9.09c |||COPII vesicle coat component Erp5/Erp6|Schizosac... 56 5e-09
SPAC17A5.08 |||COPII-coated vesicle component Erp2/3/4 |Schizosa... 40 4e-04
SPCC11E10.08 |rik1||silencing protein Rik1|Schizosaccharomyces p... 31 0.15
SPAC186.05c |||human TMEM165 homolog|Schizosaccharomyces pombe|c... 27 3.2
SPCC1322.16 |phb2||prohibitin Phb2|Schizosaccharomyces pombe|chr... 27 4.3
SPBC2D10.14c |myo51||myosin type V|Schizosaccharomyces pombe|chr... 27 4.3
SPAC2F3.16 |||ubiquitin-protein ligase E3 |Schizosaccharomyces p... 26 7.5
SPBC23E6.04c |utp10||U3 snoRNP-associated protein Utp10 |Schizos... 25 9.9
>SPAC23H4.03c |erv25||COPII-coated vesicle component Erv25
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 216
Score = 88.6 bits (210), Expect = 9e-19
Identities = 57/180 (31%), Positives = 87/180 (48%), Gaps = 6/180 (3%)
Frame = -3
Query: 776 CLKEELHANVLVAGEYDVTEIQG--QRVDYIIKDSKGHILSQKDTVTKGK-FSFVTENYD 606
CL+E + LV T G Q + +I DS G+ S V K +F +
Sbjct: 36 CLREYVGEKNLVIVNLKTTGNMGDGQTLSMMITDSSGNTHSSIQNVLGEKSVAFDVDASA 95
Query: 605 MFEVCFISKVPSERRGIPHQ---VSLDIKIGIEAKTYEGIGEAAKLKPMEVELKRLEDLS 435
M ++CF++ + H+ V L+ +G +A Y + +A L+P+E +++R D
Sbjct: 96 MLDICFLNTLTPGAIESEHKKRSVKLEFTVGADADDYSSLQKANNLEPVEADIRRARDFI 155
Query: 434 EAIVQDFTLMRKREEEMRDTXESTNNRVLFFSIFSMACLLGLATWQVLYLRRFFKAKKLI 255
E I ++ RE R+T ESTN RV F+ + L L WQ+LYLR FF+ K LI
Sbjct: 156 EEIKGKIYYLQAREARFRNTNESTNERVKNFAYLTFISLFVLVIWQILYLRSFFQRKHLI 215
>SPCC24B10.17 |emp24||COPII-coated vesicle component Emp24
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 199
Score = 64.1 bits (149), Expect = 2e-11
Identities = 42/182 (23%), Positives = 80/182 (43%)
Frame = -3
Query: 800 SLAPNTHKCLKEELHANVLVAGEYDVTEIQGQRVDYIIKDSKGHILSQKDTVTKGKFSFV 621
+L P+ +C E L N ++ Y Q V I + G I+ Q+ + ++SF
Sbjct: 25 TLKPHQRECFYENLRNNDQMSVTYQTNVGGDQLVSMSIYNPAGQIMHQEVPNSMAQYSFT 84
Query: 620 TENYDMFEVCFISKVPSERRGIPHQVSLDIKIGIEAKTYEGIGEAAKLKPMEVELKRLED 441
+N + CF + S ++ + Y + P+ ++++L D
Sbjct: 85 VKNPGKYMYCFYNDALDGE-------SKEVLFNVHGVIYISDEDLDANNPLLGKVRQLHD 137
Query: 440 LSEAIVQDFTLMRKREEEMRDTXESTNNRVLFFSIFSMACLLGLATWQVLYLRRFFKAKK 261
+ + RE R+T ESTN+RV ++SI L+ + +Q+ YL+R F+ K+
Sbjct: 138 TISKVKHEQEYFVARERIHRNTAESTNDRVKWWSILQTVILVSVCVFQIFYLKRLFEVKR 197
Query: 260 LI 255
++
Sbjct: 198 VV 199
>SPBC16E9.09c |||COPII vesicle coat component
Erp5/Erp6|Schizosaccharomyces pombe|chr 2|||Manual
Length = 215
Score = 56.4 bits (130), Expect = 5e-09
Identities = 36/142 (25%), Positives = 64/142 (45%)
Frame = -3
Query: 680 SKGHILSQKDTVTKGKFSFVTENYDMFEVCFISKVPSERRGIPHQVSLDIKIGIEAKTYE 501
+ H++ + D + F T N +C++S + L + + + K
Sbjct: 75 ANNHLIYKNDLRSNEAVRFTTTNEGTHRICYLSTSDGAWFSST-KTRLHVDLASDDKYNL 133
Query: 500 GIGEAAKLKPMEVELKRLEDLSEAIVQDFTLMRKREEEMRDTXESTNNRVLFFSIFSMAC 321
+ K + + L E+I+ + L R RE RDT ES N+RV+ ++I +
Sbjct: 134 IASSEDEAKDLTDRVAALNTRLESILGEQMLQRSREMTFRDTSESANSRVVRWTIVQIVV 193
Query: 320 LLGLATWQVLYLRRFFKAKKLI 255
LL WQ+ +L+RFF +KL+
Sbjct: 194 LLVTCIWQLSHLQRFFVKEKLV 215
>SPAC17A5.08 |||COPII-coated vesicle component Erp2/3/4
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 210
Score = 39.9 bits (89), Expect = 4e-04
Identities = 33/146 (22%), Positives = 66/146 (45%), Gaps = 2/146 (1%)
Frame = -3
Query: 701 VDYIIKDSKGHILSQKDTVTKGKFSFVTENYDMFEVCFISKVPS-ERRGIPHQVSLDIKI 525
VDY+IK ++ + F E +E CF + + + + + +++++ ++
Sbjct: 60 VDYMIKAPSQKTVALGKKRRQADVFFTLEEKGEYEFCFDNHMSTFTDKIVTMEITMENEL 119
Query: 524 GIEAKTYEGIGEAAKLKPMEVELKRLEDLSEAI-VQDFTLMRKREEEMRDTXESTNNRVL 348
+ A T + + K L+ LSE VQ++ + RE T +ST R+
Sbjct: 120 SLPALTRDEAKDYKKDSMQSTVLEISTALSEIDRVQNY--FKTREHRNYSTVKSTQARIF 177
Query: 347 FFSIFSMACLLGLATWQVLYLRRFFK 270
+FS+ ++ L+ QV ++ FFK
Sbjct: 178 WFSLAESIMVVALSALQVFIVKTFFK 203
>SPCC11E10.08 |rik1||silencing protein Rik1|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 1040
Score = 31.5 bits (68), Expect = 0.15
Identities = 16/57 (28%), Positives = 31/57 (54%), Gaps = 1/57 (1%)
Frame = -3
Query: 722 TEIQGQRVDYIIKDSKGHILSQKDTVT-KGKFSFVTENYDMFEVCFISKVPSERRGI 555
T ++GQ++ YI+ D+ G++ ++ K K+S V E + FI+ + S G+
Sbjct: 259 TPLKGQKMHYIVCDTNGYLFGVYSSILGKNKWSLVMERLPIPPFDFITSLNSIHEGL 315
>SPAC186.05c |||human TMEM165 homolog|Schizosaccharomyces pombe|chr
1|||Manual
Length = 262
Score = 27.1 bits (57), Expect = 3.2
Identities = 23/81 (28%), Positives = 38/81 (46%), Gaps = 12/81 (14%)
Frame = -3
Query: 461 ELKRLEDLSEAIVQDFTLMRK---REEEMRDTXE---------STNNRVLFFSIFSMACL 318
E K + + +++ +F + K EE+M+ T E S+ + FF +FSM+C
Sbjct: 108 ESKEVRESQQSLENEFDKVEKIIVNEEDMKKTLELGLPASNRSSSTLKDKFFKVFSMSCF 167
Query: 317 LGLATWQVLYLRRFFKAKKLI 255
L + + R F KA LI
Sbjct: 168 KNL--FSKKFSRAFIKAFALI 186
>SPCC1322.16 |phb2||prohibitin Phb2|Schizosaccharomyces pombe|chr
3|||Manual
Length = 279
Score = 26.6 bits (56), Expect = 4.3
Identities = 13/29 (44%), Positives = 18/29 (62%)
Frame = -3
Query: 518 EAKTYEGIGEAAKLKPMEVELKRLEDLSE 432
E + + IGEA K KP +EL++LE E
Sbjct: 226 EGRAAQLIGEAIKNKPGFIELRKLETARE 254
>SPBC2D10.14c |myo51||myosin type V|Schizosaccharomyces pombe|chr
2|||Manual
Length = 1471
Score = 26.6 bits (56), Expect = 4.3
Identities = 18/73 (24%), Positives = 32/73 (43%), Gaps = 4/73 (5%)
Frame = +1
Query: 553 GIPLLSDGTLDIKQTSNIS*FSVTNENFPFVTVSFCDKMCPFESLII*STLCPCISVT-- 726
GI ++ L + Q+ + + N V +S C+ + PFE + + + PC
Sbjct: 1344 GISYVNSSLLPLMQSPLVFCLRKNDANDLDVILSVCNLLSPFEVVCLLNRYQPCAGENPL 1403
Query: 727 --SYSPATNTLAC 759
S+S A L+C
Sbjct: 1404 PKSFSKAVEALSC 1416
>SPAC2F3.16 |||ubiquitin-protein ligase E3 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 425
Score = 25.8 bits (54), Expect = 7.5
Identities = 8/20 (40%), Positives = 12/20 (60%)
Frame = -3
Query: 788 NTHKCLKEELHANVLVAGEY 729
NTH+C++ N + GEY
Sbjct: 258 NTHRCIERSTDCNCPICGEY 277
>SPBC23E6.04c |utp10||U3 snoRNP-associated protein Utp10
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1649
Score = 25.4 bits (53), Expect = 9.9
Identities = 13/28 (46%), Positives = 17/28 (60%)
Frame = -3
Query: 470 MEVELKRLEDLSEAIVQDFTLMRKREEE 387
M++ L RLE LSE + F + KRE E
Sbjct: 654 MQILLPRLEQLSEFNSEKFKTVSKREVE 681
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,022,821
Number of Sequences: 5004
Number of extensions: 57953
Number of successful extensions: 142
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 136
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 140
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 404442380
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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