Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P06_pT_F08
(826 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z74035-1|CAA98480.1| 204|Caenorhabditis elegans Hypothetical pr... 204 5e-53
AL117207-7|CAB60397.1| 211|Caenorhabditis elegans Hypothetical ... 97 1e-20
AF014940-5|AAB63937.1| 203|Caenorhabditis elegans Suppressor/en... 58 1e-08
AC199170-2|ABO33261.1| 167|Caenorhabditis elegans Hypothetical ... 43 2e-04
Z68116-10|CAI79231.1| 182|Caenorhabditis elegans Hypothetical p... 30 1.7
Z35639-3|CAA84695.2| 780|Caenorhabditis elegans Hypothetical pr... 29 3.1
U58083-1|AAC47120.1| 780|Caenorhabditis elegans CUL-1 protein. 29 3.1
Z73907-1|CAA98124.1| 4753|Caenorhabditis elegans Hypothetical pr... 28 7.1
Z46267-16|CAO78720.1| 576|Caenorhabditis elegans Hypothetical p... 28 7.1
Z46267-4|CAD45594.1| 517|Caenorhabditis elegans Hypothetical pr... 28 7.1
Z46267-3|CAA86421.3| 522|Caenorhabditis elegans Hypothetical pr... 28 7.1
M96150-1|AAA28105.1| 4753|Caenorhabditis elegans LDL receptor-re... 28 7.1
Z92822-8|CAL49447.1| 1383|Caenorhabditis elegans Hypothetical pr... 28 9.3
Z82094-4|CAL49445.1| 1383|Caenorhabditis elegans Hypothetical pr... 28 9.3
Z46935-1|CAA87049.2| 519|Caenorhabditis elegans Hypothetical pr... 28 9.3
DQ314286-1|ABC42046.1| 1383|Caenorhabditis elegans DYF-2 protein. 28 9.3
AL117206-9|CAL22706.1| 292|Caenorhabditis elegans Hypothetical ... 28 9.3
AF016415-9|AAW88416.1| 297|Caenorhabditis elegans Serpentine re... 28 9.3
AC006830-3|AAP13735.1| 348|Caenorhabditis elegans Serpentine re... 28 9.3
>Z74035-1|CAA98480.1| 204|Caenorhabditis elegans Hypothetical
protein F47G9.1 protein.
Length = 204
Score = 204 bits (499), Expect = 5e-53
Identities = 95/189 (50%), Positives = 136/189 (71%), Gaps = 2/189 (1%)
Frame = -3
Query: 812 AIMWSLAPNTHKCLKEELHANVLVAGEYDVTEIQGQRVDYIIKDSKGHILSQKDTVT--K 639
++ + + P KCLKEE+H NV+V GEY+ ++ + D++GH L +++ K
Sbjct: 16 SLRFYVPPKEKKCLKEEIHKNVVVTGEYEFSQGIQYTGSIHVTDTRGHTLYKRENFADLK 75
Query: 638 GKFSFVTENYDMFEVCFISKVPSERRGIPHQVSLDIKIGIEAKTYEGIGEAAKLKPMEVE 459
GKF+F + YD+FE+C + P+ G +VSL +K G+EAK Y+ I +A KLKP+EVE
Sbjct: 76 GKFAFTADEYDIFEICIENHPPAGHPGEKREVSLILKHGVEAKNYDDIAKAEKLKPLEVE 135
Query: 458 LKRLEDLSEAIVQDFTLMRKREEEMRDTXESTNNRVLFFSIFSMACLLGLATWQVLYLRR 279
L+RLED++++I +DF MR+REEEMR+T ESTN+RVL+ SIFSM CLLGLA WQVL+LR
Sbjct: 136 LRRLEDMADSITKDFAFMRQREEEMRNTNESTNSRVLYLSIFSMLCLLGLAIWQVLFLRN 195
Query: 278 FFKAKKLIE 252
+FK+KKLI+
Sbjct: 196 YFKSKKLID 204
>AL117207-7|CAB60397.1| 211|Caenorhabditis elegans Hypothetical
protein Y60A3A.9 protein.
Length = 211
Score = 97.5 bits (232), Expect = 1e-20
Identities = 58/197 (29%), Positives = 95/197 (48%), Gaps = 10/197 (5%)
Frame = -3
Query: 815 DAIMWSLAPNTHKCLKEELHANVLVAGEYDVTEIQGQRVDY----------IIKDSKGHI 666
D++ + +A KC EE+ +V G Y V Y +KD + +
Sbjct: 15 DSLYFHIAETEKKCFIEEIPDETMVTGNYKVQLYDPNTKGYGDYPNIGMHVEVKDPEDKV 74
Query: 665 LSQKDTVTKGKFSFVTENYDMFEVCFISKVPSERRGIPHQVSLDIKIGIEAKTYEGIGEA 486
+ K +G+F+F + +C S + G +V LDI+ G A+ Y I +
Sbjct: 75 ILSKLYTAEGRFTFTSNTPGEHVICIYSNSTAWFNGAQLRVHLDIQAGDHAQDYAQIAQK 134
Query: 485 AKLKPMEVELKRLEDLSEAIVQDFTLMRKREEEMRDTXESTNNRVLFFSIFSMACLLGLA 306
KL +++ +++L D + I ++ R REE R T ESTN+RV ++SI + L
Sbjct: 135 DKLNELQLRIRQLLDQVDQITKEQNYQRYREERFRQTSESTNSRVFYWSIAQVVVLAITG 194
Query: 305 TWQVLYLRRFFKAKKLI 255
WQ+ +LR FF+AKKL+
Sbjct: 195 AWQMRHLRGFFEAKKLV 211
>AF014940-5|AAB63937.1| 203|Caenorhabditis elegans
Suppressor/enhancer of lin-12 protein9 protein.
Length = 203
Score = 57.6 bits (133), Expect = 1e-08
Identities = 40/181 (22%), Positives = 81/181 (44%), Gaps = 3/181 (1%)
Frame = -3
Query: 788 NTHKCLKEELHANVLVAGEYDVTEIQGQRVDYIIKDSKGHILSQKDTVTKGKFSFVTENY 609
N +C + L + + ++V E +D I + + + + GKF+F
Sbjct: 26 NEEQCFFDRLTSGTKMGLMFEVAEGGFLDIDVKITGPDNKEIYKGERESSGKFTFAAHMD 85
Query: 608 DMFEVCFISKVPSERRGIPHQVSLDIKIGIEAKTYEGIG---EAAKLKPMEVELKRLEDL 438
++ CF +K+ + P V ++I + G +AA +E ++ L
Sbjct: 86 GVYTYCFGNKMSTMT---PKAVMFTVEITEPHQQAPGAAANQDAADNAKLEEMVRELSSA 142
Query: 437 SEAIVQDFTLMRKREEEMRDTXESTNNRVLFFSIFSMACLLGLATWQVLYLRRFFKAKKL 258
++ + M RE R+ E+TN+RV+ ++ F L+G+ Q+ YL+RFF+ + +
Sbjct: 143 LMSVKHEQEYMEVRERVHRNINENTNSRVVMWAAFEAFVLVGMTVGQIFYLKRFFEVRTM 202
Query: 257 I 255
+
Sbjct: 203 V 203
>AC199170-2|ABO33261.1| 167|Caenorhabditis elegans Hypothetical
protein T08D2.1 protein.
Length = 167
Score = 43.2 bits (97), Expect = 2e-04
Identities = 30/123 (24%), Positives = 51/123 (41%), Gaps = 10/123 (8%)
Frame = -3
Query: 815 DAIMWSLAPNTHKCLKEELHANVLVAGEYDVTEIQGQRVDY----------IIKDSKGHI 666
D++ + +A KC EE+ +V G Y V Y +KD + +
Sbjct: 15 DSLYFHIAETEKKCFIEEIPDETMVTGNYKVQLYDPNTKGYGDYPNIGMHVEVKDPEDKV 74
Query: 665 LSQKDTVTKGKFSFVTENYDMFEVCFISKVPSERRGIPHQVSLDIKIGIEAKTYEGIGEA 486
+ K ++G+F+F + +C S + G +V LDI+ G A+ Y + E
Sbjct: 75 ILSKLYTSEGRFTFTSNTPGEHVICIYSNTTAWFNGAQLRVHLDIQAGDHAQDYAQVEEE 134
Query: 485 AKL 477
KL
Sbjct: 135 RKL 137
>Z68116-10|CAI79231.1| 182|Caenorhabditis elegans Hypothetical
protein F42F12.11 protein.
Length = 182
Score = 30.3 bits (65), Expect = 1.7
Identities = 13/50 (26%), Positives = 32/50 (64%), Gaps = 1/50 (2%)
Frame = -3
Query: 767 EELHANV-LVAGEYDVTEIQGQRVDYIIKDSKGHILSQKDTVTKGKFSFV 621
E++ N+ L G Y+V++ G +VD ++ ++ +++S++ + +GK + V
Sbjct: 73 EDIQPNIRLYDGHYEVSDGYGNQVDLVLTVAQRNLISERCFLLQGKIAHV 122
>Z35639-3|CAA84695.2| 780|Caenorhabditis elegans Hypothetical
protein D2045.6 protein.
Length = 780
Score = 29.5 bits (63), Expect = 3.1
Identities = 12/48 (25%), Positives = 24/48 (50%)
Frame = -3
Query: 803 WSLAPNTHKCLKEELHANVLVAGEYDVTEIQGQRVDYIIKDSKGHILS 660
W P T L ++L + + G++ + G+R+ ++ S+G I S
Sbjct: 550 WPTFPTTPITLPQQLSKTIEIFGQFYNEKFNGRRLTWVYSQSRGEITS 597
>U58083-1|AAC47120.1| 780|Caenorhabditis elegans CUL-1 protein.
Length = 780
Score = 29.5 bits (63), Expect = 3.1
Identities = 12/48 (25%), Positives = 24/48 (50%)
Frame = -3
Query: 803 WSLAPNTHKCLKEELHANVLVAGEYDVTEIQGQRVDYIIKDSKGHILS 660
W P T L ++L + + G++ + G+R+ ++ S+G I S
Sbjct: 550 WPTFPTTPITLPQQLSKTIEIFGQFYNEKFNGRRLTWVYSQSRGEITS 597
>Z73907-1|CAA98124.1| 4753|Caenorhabditis elegans Hypothetical protein
F29D11.1 protein.
Length = 4753
Score = 28.3 bits (60), Expect = 7.1
Identities = 12/41 (29%), Positives = 21/41 (51%)
Frame = -3
Query: 620 TENYDMFEVCFISKVPSERRGIPHQVSLDIKIGIEAKTYEG 498
T+ D +CFI + + + Q +D+KIG + +EG
Sbjct: 3213 TDRSDESSLCFIDECSLAEKPLCEQKCMDMKIGYKCDCFEG 3253
>Z46267-16|CAO78720.1| 576|Caenorhabditis elegans Hypothetical
protein F49E2.2c protein.
Length = 576
Score = 28.3 bits (60), Expect = 7.1
Identities = 13/48 (27%), Positives = 24/48 (50%)
Frame = -3
Query: 791 PNTHKCLKEELHANVLVAGEYDVTEIQGQRVDYIIKDSKGHILSQKDT 648
P HK ++LH + V ++ E ++VD ++DS+ + S T
Sbjct: 269 PEDHKDWHQDLHEHAAVVAAEEIKENVEKKVDEAVQDSRSNSTSSVAT 316
>Z46267-4|CAD45594.1| 517|Caenorhabditis elegans Hypothetical
protein F49E2.2b protein.
Length = 517
Score = 28.3 bits (60), Expect = 7.1
Identities = 13/48 (27%), Positives = 24/48 (50%)
Frame = -3
Query: 791 PNTHKCLKEELHANVLVAGEYDVTEIQGQRVDYIIKDSKGHILSQKDT 648
P HK ++LH + V ++ E ++VD ++DS+ + S T
Sbjct: 215 PEDHKDWHQDLHEHAAVVAAEEIKENVEKKVDEAVQDSRSNSTSSVAT 262
>Z46267-3|CAA86421.3| 522|Caenorhabditis elegans Hypothetical
protein F49E2.2a protein.
Length = 522
Score = 28.3 bits (60), Expect = 7.1
Identities = 13/48 (27%), Positives = 24/48 (50%)
Frame = -3
Query: 791 PNTHKCLKEELHANVLVAGEYDVTEIQGQRVDYIIKDSKGHILSQKDT 648
P HK ++LH + V ++ E ++VD ++DS+ + S T
Sbjct: 215 PEDHKDWHQDLHEHAAVVAAEEIKENVEKKVDEAVQDSRSNSTSSVAT 262
>M96150-1|AAA28105.1| 4753|Caenorhabditis elegans LDL receptor-related
protein protein.
Length = 4753
Score = 28.3 bits (60), Expect = 7.1
Identities = 12/41 (29%), Positives = 21/41 (51%)
Frame = -3
Query: 620 TENYDMFEVCFISKVPSERRGIPHQVSLDIKIGIEAKTYEG 498
T+ D +CFI + + + Q +D+KIG + +EG
Sbjct: 3213 TDRSDESSLCFIDECSLAEKPLCEQKCMDMKIGYKCDCFEG 3253
>Z92822-8|CAL49447.1| 1383|Caenorhabditis elegans Hypothetical
protein ZK520.3a protein.
Length = 1383
Score = 27.9 bits (59), Expect = 9.3
Identities = 17/80 (21%), Positives = 40/80 (50%)
Frame = -3
Query: 602 FEVCFISKVPSERRGIPHQVSLDIKIGIEAKTYEGIGEAAKLKPMEVELKRLEDLSEAIV 423
+++C S S LD +G+ K + IG+AA + +E+ ++ +E+ +
Sbjct: 705 WKICIHSNDGSHWNQFAMAALLDSDVGMAIKIFREIGDAAMVTALEL-IETIEEKNLLHA 763
Query: 422 QDFTLMRKREEEMRDTXEST 363
Q +T++ + ++ + ES+
Sbjct: 764 QIYTILSRYDDAEQLYLESS 783
>Z82094-4|CAL49445.1| 1383|Caenorhabditis elegans Hypothetical
protein ZK520.3a protein.
Length = 1383
Score = 27.9 bits (59), Expect = 9.3
Identities = 17/80 (21%), Positives = 40/80 (50%)
Frame = -3
Query: 602 FEVCFISKVPSERRGIPHQVSLDIKIGIEAKTYEGIGEAAKLKPMEVELKRLEDLSEAIV 423
+++C S S LD +G+ K + IG+AA + +E+ ++ +E+ +
Sbjct: 705 WKICIHSNDGSHWNQFAMAALLDSDVGMAIKIFREIGDAAMVTALEL-IETIEEKNLLHA 763
Query: 422 QDFTLMRKREEEMRDTXEST 363
Q +T++ + ++ + ES+
Sbjct: 764 QIYTILSRYDDAEQLYLESS 783
>Z46935-1|CAA87049.2| 519|Caenorhabditis elegans Hypothetical
protein M106.2 protein.
Length = 519
Score = 27.9 bits (59), Expect = 9.3
Identities = 15/45 (33%), Positives = 26/45 (57%), Gaps = 3/45 (6%)
Frame = -3
Query: 509 TYEGIGEAAKLKPMEVELKRLEDLSEAI---VQDFTLMRKREEEM 384
T+E EA L+ MEVE++ E L+E + ++ + KR +E+
Sbjct: 241 TFEQKKEALLLRKMEVEIRHTELLNEKLELEIRSIEVQEKRNQEL 285
>DQ314286-1|ABC42046.1| 1383|Caenorhabditis elegans DYF-2 protein.
Length = 1383
Score = 27.9 bits (59), Expect = 9.3
Identities = 17/80 (21%), Positives = 40/80 (50%)
Frame = -3
Query: 602 FEVCFISKVPSERRGIPHQVSLDIKIGIEAKTYEGIGEAAKLKPMEVELKRLEDLSEAIV 423
+++C S S LD +G+ K + IG+AA + +E+ ++ +E+ +
Sbjct: 705 WKICIHSNDGSHWNQFAMAALLDSDVGMAIKIFREIGDAAMVTALEL-IETIEEKNLLHA 763
Query: 422 QDFTLMRKREEEMRDTXEST 363
Q +T++ + ++ + ES+
Sbjct: 764 QIYTILSRYDDAEQLYLESS 783
>AL117206-9|CAL22706.1| 292|Caenorhabditis elegans Hypothetical
protein Y67A10A.11 protein.
Length = 292
Score = 27.9 bits (59), Expect = 9.3
Identities = 11/19 (57%), Positives = 12/19 (63%)
Frame = +1
Query: 706 CPCISVTSYSPATNTLACN 762
CPCI VT+ NT ACN
Sbjct: 62 CPCIGVTTKLMICNTQACN 80
>AF016415-9|AAW88416.1| 297|Caenorhabditis elegans Serpentine
receptor, class bc (class b-like) protein 36 protein.
Length = 297
Score = 27.9 bits (59), Expect = 9.3
Identities = 19/61 (31%), Positives = 28/61 (45%)
Frame = -3
Query: 338 IFSMACLLGLATWQVLYLRRFFKAKKLIE*LSNNTRVTS**NCVDSILFFFFLLRFCYNL 159
IFS+ + + L++ K KK LS R+ C ++L F FL FC N+
Sbjct: 180 IFSLIVIFSIMLSIRLFIWNMVKNKKNKNNLSKANRLALLDMC--TVLLFDFLPSFCGNM 237
Query: 158 W 156
W
Sbjct: 238 W 238
>AC006830-3|AAP13735.1| 348|Caenorhabditis elegans Serpentine
receptor, class w protein3 protein.
Length = 348
Score = 27.9 bits (59), Expect = 9.3
Identities = 14/36 (38%), Positives = 24/36 (66%)
Frame = +1
Query: 169 QKRSKKKKNRIESTQFHQDVTRVLLLNYSISFFALK 276
+K +K++KNR +S +D T L++ +ISFF L+
Sbjct: 231 RKAAKRRKNRGKSACDKKDSTTKLVIFVTISFFFLE 266
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,666,484
Number of Sequences: 27780
Number of extensions: 320523
Number of successful extensions: 917
Number of sequences better than 10.0: 19
Number of HSP's better than 10.0 without gapping: 873
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 913
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 2040452812
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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