Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P06_pT_F05
(932 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC57A7.04c |pabp||mRNA export shuttling protein |Schizosacchar... 39 0.001
SPBP8B7.15c |||ubiquitin-protein ligase E3 RBBP6 family |Schizos... 37 0.004
SPAC2F3.15 |lsk1||latrunculin sensitive kinase Lsk1 |Schizosacch... 33 0.058
SPBC17G9.05 |rct1|cyp6|RRM-containing cyclophilin regulating tra... 32 0.13
SPAC13D6.02c |byr3||zinc finger protein Byr3|Schizosaccharomyces... 31 0.18
SPAC343.07 |mug28||RNA-binding protein Mug28|Schizosaccharomyces... 31 0.18
SPAC13G7.13c |msa1|SPAC6C3.01c|RNA-binding protein Msa1|Schizosa... 31 0.23
SPBC8D2.01 |gsk31||serine/threonine protein kinase Gsk31|Schizos... 30 0.41
SPAC17A2.09c |csx1||RNA-binding protein Csx1|Schizosaccharomyces... 30 0.41
SPBC4F6.14 |||RNA-binding protein|Schizosaccharomyces pombe|chr ... 30 0.54
SPBC660.11 |tcg1|mug187|single-stranded telomeric binding protei... 29 1.2
SPAC22E12.02 |||RNA-binding protein|Schizosaccharomyces pombe|ch... 28 2.2
SPAC328.04 |||AAA family ATPase, unknown biological role|Schizos... 27 2.9
SPAC19A8.13 |usp101|snp1|U1 snRNP-associated protein Usp101 |Sch... 27 2.9
SPBP35G2.08c |air1||zinc knuckle TRAMP complex subunit Air1|Schi... 27 3.8
SPBP22H7.02c |||RNA-binding protein Mrd1 |Schizosaccharomyces po... 26 6.6
SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual 26 6.6
SPAC1002.13c |psu1||beta-glucosidase Psu1 |Schizosaccharomyces p... 26 6.6
SPBC18H10.03 |tif35||translation initiation factor eIF3g|Schizos... 26 8.7
>SPAC57A7.04c |pabp||mRNA export shuttling protein
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 653
Score = 38.7 bits (86), Expect = 0.001
Identities = 21/67 (31%), Positives = 35/67 (52%), Gaps = 7/67 (10%)
Frame = -3
Query: 900 VRELFQKFGTVXECDIV-------RXYGFVHLDATGDVNDAIKELNGMMVDGQPMKVQLS 742
+ + F FG + C + + YGFVH D+ N AI+ +NGM+++ + + V
Sbjct: 184 LHDTFSAFGKILSCKVAVDELGNAKGYGFVHFDSVESANAAIEHVNGMLLNDKKVYVGHH 243
Query: 741 TSRVRQR 721
SR R+R
Sbjct: 244 VSR-RER 249
Score = 31.9 bits (69), Expect = 0.13
Identities = 19/74 (25%), Positives = 35/74 (47%), Gaps = 7/74 (9%)
Frame = -3
Query: 921 DQTRAPEVRELFQKFGTVXECDIV-------RXYGFVHLDATGDVNDAIKELNGMMVDGQ 763
D+ ++ F FGT+ I+ + +GFV + N A+ E+N M+ G+
Sbjct: 373 DEVDDERLKAEFSAFGTITSAKIMTDEQGKSKGFGFVCYTTPEEANKAVTEMNQRMLAGK 432
Query: 762 PMKVQLSTSRVRQR 721
P+ V L+ + +R
Sbjct: 433 PLYVALAQRKEVRR 446
>SPBP8B7.15c |||ubiquitin-protein ligase E3 RBBP6 family
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 482
Score = 37.1 bits (82), Expect = 0.004
Identities = 12/24 (50%), Positives = 16/24 (66%)
Frame = -3
Query: 696 CYRCGRGGHWSKECPKALGPDRNG 625
CYRCG+ GHW + CP P+ +G
Sbjct: 185 CYRCGQKGHWIQACPTNADPNYDG 208
>SPAC2F3.15 |lsk1||latrunculin sensitive kinase Lsk1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 593
Score = 33.1 bits (72), Expect = 0.058
Identities = 17/57 (29%), Positives = 32/57 (56%)
Frame = +1
Query: 745 QLHLHGLSVDHHTVQLFDSVVHIARRVQMHEXVXTHDIALXDRPELLKQLADFGRAR 915
QLH ++ H + Q+F+++ ++ R +H + +I L + +L + ADFG AR
Sbjct: 368 QLHFTPGNIKHLSKQIFEALAYLHHRGVLHRDIKGSNILLNNNGDL--KFADFGLAR 422
>SPBC17G9.05 |rct1|cyp6|RRM-containing cyclophilin regulating
transcription Rct1|Schizosaccharomyces pombe|chr
2|||Manual
Length = 432
Score = 31.9 bits (69), Expect = 0.13
Identities = 17/73 (23%), Positives = 32/73 (43%), Gaps = 8/73 (10%)
Frame = -3
Query: 915 TRAPEVRELFQKFGTVXECDIVR--------XYGFVHLDATGDVNDAIKELNGMMVDGQP 760
T+ ++ +F +FG + C ++R Y F+ D V A ++ +++D
Sbjct: 255 TQDEDLELIFSRFGKIISCQVIRDKETGDSLQYAFIEFDNKESVEKAYFKMQNVLIDDSR 314
Query: 759 MKVQLSTSRVRQR 721
+ V S S R R
Sbjct: 315 IHVDFSQSVARYR 327
>SPAC13D6.02c |byr3||zinc finger protein Byr3|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 179
Score = 31.5 bits (68), Expect = 0.18
Identities = 13/29 (44%), Positives = 18/29 (62%), Gaps = 3/29 (10%)
Frame = -3
Query: 732 VRQRPGMGDPEQ---CYRCGRGGHWSKEC 655
VR P +P Q CY+CGR GH +++C
Sbjct: 70 VRDCPSSPNPRQGAECYKCGRVGHIARDC 98
Score = 30.7 bits (66), Expect = 0.31
Identities = 15/39 (38%), Positives = 20/39 (51%), Gaps = 3/39 (7%)
Frame = -3
Query: 708 DPEQ---CYRCGRGGHWSKECPKALGPDRNGFRDRAFGR 601
+P+Q CY CG GH ++CP + P R G GR
Sbjct: 53 EPQQEKTCYACGTAGHLVRDCPSSPNP-RQGAECYKCGR 90
Score = 30.3 bits (65), Expect = 0.41
Identities = 9/17 (52%), Positives = 12/17 (70%)
Frame = -3
Query: 699 QCYRCGRGGHWSKECPK 649
+CY CG GH ++EC K
Sbjct: 18 RCYNCGENGHQARECTK 34
Score = 27.9 bits (59), Expect = 2.2
Identities = 10/18 (55%), Positives = 13/18 (72%)
Frame = -3
Query: 699 QCYRCGRGGHWSKECPKA 646
+CY CG+ GH S EC +A
Sbjct: 136 KCYSCGKIGHRSFECQQA 153
>SPAC343.07 |mug28||RNA-binding protein Mug28|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 609
Score = 31.5 bits (68), Expect = 0.18
Identities = 19/65 (29%), Positives = 30/65 (46%), Gaps = 8/65 (12%)
Frame = -3
Query: 903 EVRELFQKFGTVXEC--------DIVRXYGFVHLDATGDVNDAIKELNGMMVDGQPMKVQ 748
++ ELF KFG + C +I + YGFV + AI LNG++ + + V
Sbjct: 436 QLEELFSKFGRIKSCTLASYPSTEISKGYGFVSFSHPFEAVQAINTLNGVLFGKKRLFVN 495
Query: 747 LSTSR 733
+ R
Sbjct: 496 YAEKR 500
>SPAC13G7.13c |msa1|SPAC6C3.01c|RNA-binding protein
Msa1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 533
Score = 31.1 bits (67), Expect = 0.23
Identities = 14/56 (25%), Positives = 30/56 (53%), Gaps = 5/56 (8%)
Frame = -3
Query: 900 VRELFQKFGTVXECDIV-----RXYGFVHLDATGDVNDAIKELNGMMVDGQPMKVQ 748
V++ FQ++G + ++ R Y FV T D + A+ E ++DG+ ++++
Sbjct: 99 VKDYFQQWGPLLHVKVLKDWLQRPYSFVQFQNTDDASKALSEAQNTILDGRHIRIE 154
>SPBC8D2.01 |gsk31||serine/threonine protein kinase
Gsk31|Schizosaccharomyces pombe|chr 2|||Manual
Length = 381
Score = 30.3 bits (65), Expect = 0.41
Identities = 16/62 (25%), Positives = 33/62 (53%)
Frame = +1
Query: 736 TRRQLHLHGLSVDHHTVQLFDSVVHIARRVQMHEXVXTHDIALXDRPELLKQLADFGRAR 915
TRR+ + LS+ + QLF ++ ++ H + ++ + + +LK L DFG A+
Sbjct: 116 TRRRKSIPNLSIKLYAFQLFRALAYLHSTGVCHRDIKPQNLLVDYKTGILK-LCDFGSAK 174
Query: 916 LV 921
++
Sbjct: 175 VL 176
>SPAC17A2.09c |csx1||RNA-binding protein Csx1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 632
Score = 30.3 bits (65), Expect = 0.41
Identities = 10/41 (24%), Positives = 23/41 (56%)
Frame = -3
Query: 849 RXYGFVHLDATGDVNDAIKELNGMMVDGQPMKVQLSTSRVR 727
R YGFV + + A+ + G + G+P+++ +++ + R
Sbjct: 224 RKYGFVRFSSEKEQQHALMHMQGYLCQGRPLRISVASPKSR 264
>SPBC4F6.14 |||RNA-binding protein|Schizosaccharomyces pombe|chr
2|||Manual
Length = 674
Score = 29.9 bits (64), Expect = 0.54
Identities = 19/72 (26%), Positives = 30/72 (41%), Gaps = 8/72 (11%)
Frame = -3
Query: 918 QTRAPEVRELFQKFGTVXECDIV--------RXYGFVHLDATGDVNDAIKELNGMMVDGQ 763
QT+ ++ F G + +V R YGFV D A KEL + G+
Sbjct: 15 QTKQDDLTNFFSDVGPIKHAVVVTNPETGENRGYGFVTFSMLEDAQRAAKELKNKKLHGR 74
Query: 762 PMKVQLSTSRVR 727
+++ +T R R
Sbjct: 75 ILRLDFATPRKR 86
Score = 29.5 bits (63), Expect = 0.71
Identities = 18/59 (30%), Positives = 28/59 (47%), Gaps = 7/59 (11%)
Frame = -3
Query: 888 FQKFGTVXECDI-------VRXYGFVHLDATGDVNDAIKELNGMMVDGQPMKVQLSTSR 733
F KFG V E I + + FV + +A+ LNG +DG+P+ V + S+
Sbjct: 128 FSKFGKVREIKIPTKGGGRMCGFAFVWMKDRKAAEEAMNSLNGTEIDGRPIAVDWAVSK 186
>SPBC660.11 |tcg1|mug187|single-stranded telomeric binding protein
Tgc1 |Schizosaccharomyces pombe|chr 2|||Manual
Length = 348
Score = 28.7 bits (61), Expect = 1.2
Identities = 25/78 (32%), Positives = 38/78 (48%), Gaps = 12/78 (15%)
Frame = -3
Query: 915 TRAPEVRELFQKFGTVXECDI----VR--------XYGFVHLDATGDVNDAIKELNGMMV 772
T+ E+R LF+ GTV + I VR FV + DV+ AI+ LNG +
Sbjct: 55 TKKSEIRSLFETVGTVRKVTIPFRRVRRGTRLVPSGIAFVTFNNQEDVDKAIETLNGKTL 114
Query: 771 DGQPMKVQLSTSRVRQRP 718
D + + VQ V+++P
Sbjct: 115 DDREIVVQ-KARPVQEQP 131
>SPAC22E12.02 |||RNA-binding protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 219
Score = 27.9 bits (59), Expect = 2.2
Identities = 13/41 (31%), Positives = 22/41 (53%)
Frame = -3
Query: 849 RXYGFVHLDATGDVNDAIKELNGMMVDGQPMKVQLSTSRVR 727
R +GFV + A +E NG + +P+K+ +TS V+
Sbjct: 70 RGFGFVSFKDSDQFLKAWREKNGKYIGSRPVKLSRATSDVK 110
>SPAC328.04 |||AAA family ATPase, unknown biological
role|Schizosaccharomyces pombe|chr 1|||Manual
Length = 741
Score = 27.5 bits (58), Expect = 2.9
Identities = 13/27 (48%), Positives = 17/27 (62%), Gaps = 1/27 (3%)
Frame = +1
Query: 721 PLPDTTRRQLHLHG-LSVDHHTVQLFD 798
PLPD T R+LHL+ L H++ L D
Sbjct: 633 PLPDETTRRLHLNNLLKYQKHSLSLED 659
>SPAC19A8.13 |usp101|snp1|U1 snRNP-associated protein Usp101
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 261
Score = 27.5 bits (58), Expect = 2.9
Identities = 25/98 (25%), Positives = 44/98 (44%), Gaps = 9/98 (9%)
Frame = -3
Query: 915 TRAPEVRELFQKFGTVXECDIVRX--------YGFVHLDATGDVNDAIKELNGMMVDGQP 760
T+ ++ F ++G + +VR Y FV + D+ A K G+M++G+
Sbjct: 111 TKESDIEREFTRYGPIERIRVVRNKVTGKSMGYAFVVFERERDLKVAYKASAGLMLNGRR 170
Query: 759 MKVQLSTSRVRQRPGMGDPEQCYRCGRGG-HWSKECPK 649
+ V + R R G + G GG H++KE P+
Sbjct: 171 IVVDVE----RGRTVKGWLPRKLGGGLGGRHYTKERPR 204
>SPBP35G2.08c |air1||zinc knuckle TRAMP complex subunit
Air1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 313
Score = 27.1 bits (57), Expect = 3.8
Identities = 9/18 (50%), Positives = 11/18 (61%)
Frame = -3
Query: 696 CYRCGRGGHWSKECPKAL 643
C+ C GH SK+CP L
Sbjct: 89 CHNCKGNGHISKDCPHVL 106
>SPBP22H7.02c |||RNA-binding protein Mrd1 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 833
Score = 26.2 bits (55), Expect = 6.6
Identities = 10/34 (29%), Positives = 19/34 (55%)
Frame = -3
Query: 843 YGFVHLDATGDVNDAIKELNGMMVDGQPMKVQLS 742
+GFV A+ +NG ++DG ++++LS
Sbjct: 667 FGFVEFKDKASAVAAMHAMNGFVLDGHKLEIKLS 700
>SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1611
Score = 26.2 bits (55), Expect = 6.6
Identities = 15/41 (36%), Positives = 20/41 (48%)
Frame = +3
Query: 642 PAPSGTPWTSGPRGHSGSTARGRPCPAAAGHDSSTTAPSWA 764
P P+ TP P+ SG+ + P PA + S APS A
Sbjct: 1044 PIPTSTPPV--PKSSSGAPSAPPPVPAPSSEIPSIPAPSGA 1082
>SPAC1002.13c |psu1||beta-glucosidase Psu1 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 417
Score = 26.2 bits (55), Expect = 6.6
Identities = 12/33 (36%), Positives = 20/33 (60%)
Frame = +2
Query: 737 LVDNCTFMGCPSTIIPFNSLIASFTSPVASKCT 835
+VD+ T S++IP +S + + +S VAS T
Sbjct: 113 VVDSATSAAASSSVIPTSSSVVASSSEVASSTT 145
>SPBC18H10.03 |tif35||translation initiation factor
eIF3g|Schizosaccharomyces pombe|chr 2|||Manual
Length = 282
Score = 25.8 bits (54), Expect = 8.7
Identities = 9/19 (47%), Positives = 15/19 (78%)
Frame = -3
Query: 924 TDQTRAPEVRELFQKFGTV 868
+D TR E+R+LF++FG +
Sbjct: 210 SDDTREEELRDLFRRFGGI 228
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,337,245
Number of Sequences: 5004
Number of extensions: 62836
Number of successful extensions: 219
Number of sequences better than 10.0: 19
Number of HSP's better than 10.0 without gapping: 192
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 218
length of database: 2,362,478
effective HSP length: 73
effective length of database: 1,997,186
effective search space used: 473333082
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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