Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P06_pT_F05
         (932 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ071552-1|AAY82248.1|  495|Apis mellifera anarchy 1 protein.          25   1.3  
AY569711-1|AAS86664.1|  401|Apis mellifera feminizer protein.          24   1.7  
AB161182-1|BAD08344.1| 1040|Apis mellifera metabotropic glutamat...    24   2.3  
EF625899-1|ABR45906.1| 1010|Apis mellifera high Glx storage prot...    22   6.9  
AY569713-1|AAS86666.1|  401|Apis mellifera feminizer protein.          22   6.9  

>DQ071552-1|AAY82248.1|  495|Apis mellifera anarchy 1 protein.
          Length = 495

 Score = 24.6 bits (51), Expect = 1.3
 Identities = 10/24 (41%), Positives = 13/24 (54%)
 Frame = +3

Query: 237 YLC*NLHTFLWTSGVLVGGFCGCT 308
           Y+C  LHT +W +G   G    CT
Sbjct: 83  YVCRVLHTTVWVAGAQRGNEQRCT 106


>AY569711-1|AAS86664.1|  401|Apis mellifera feminizer protein.
          Length = 401

 Score = 24.2 bits (50), Expect = 1.7
 Identities = 10/30 (33%), Positives = 14/30 (46%)
 Frame = -2

Query: 841 RXRAFGRDGRCERRYQRVERYDGRRTAHEG 752
           R R+F R   C  RY+     DG    ++G
Sbjct: 220 RSRSFQRTSSCHSRYEDSRHEDGNSYRNDG 249


>AB161182-1|BAD08344.1| 1040|Apis mellifera metabotropic glutamate
           receptor protein.
          Length = 1040

 Score = 23.8 bits (49), Expect = 2.3
 Identities = 11/33 (33%), Positives = 15/33 (45%)
 Frame = -1

Query: 509 HGSILHGTCSSDAIQLEEHHEGWNWADLEELAV 411
           H  I HG   S ++ L  H E  +W   +E  V
Sbjct: 81  HHPIRHGRRQSRSMDLNAHREQMSWPVKKEAVV 113


>EF625899-1|ABR45906.1| 1010|Apis mellifera high Glx storage protein
           protein.
          Length = 1010

 Score = 22.2 bits (45), Expect = 6.9
 Identities = 8/22 (36%), Positives = 14/22 (63%)
 Frame = -3

Query: 798 IKELNGMMVDGQPMKVQLSTSR 733
           ++ LNG+   G+P  +QL + R
Sbjct: 315 LRGLNGLEFAGRPQNLQLQSQR 336


>AY569713-1|AAS86666.1|  401|Apis mellifera feminizer protein.
          Length = 401

 Score = 22.2 bits (45), Expect = 6.9
 Identities = 9/30 (30%), Positives = 14/30 (46%)
 Frame = -2

Query: 841 RXRAFGRDGRCERRYQRVERYDGRRTAHEG 752
           R R+F R   C  RY+ +   D     ++G
Sbjct: 220 RSRSFQRTSSCHSRYEDLRHEDRNSYRNDG 249


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 235,759
Number of Sequences: 438
Number of extensions: 5002
Number of successful extensions: 18
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 18
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 18
length of database: 146,343
effective HSP length: 58
effective length of database: 120,939
effective search space used: 30476628
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)