Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P06_pT_F01
(886 letters)
Database: uniref50
1,657,284 sequences; 575,637,011 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
UniRef50_P40937 Cluster: Replication factor C subunit 5; n=51; E... 349 6e-95
UniRef50_P34429 Cluster: Putative replication factor C subunit 5... 261 1e-68
UniRef50_Q5K796 Cluster: DNA replication factor, putative; n=5; ... 251 2e-65
UniRef50_A4IBL6 Cluster: Replication factor C, subunit 3, putati... 241 1e-62
UniRef50_P38629 Cluster: Replication factor C subunit 3; n=15; D... 231 2e-59
UniRef50_A2DS36 Cluster: ATPase, AAA family protein; n=1; Tricho... 230 3e-59
UniRef50_Q2UJ68 Cluster: Replication factor C; n=15; Pezizomycot... 208 2e-52
UniRef50_A7ATE5 Cluster: Replication factor C3 protein, putative... 206 8e-52
UniRef50_Q01F45 Cluster: Rfc5 replication factor C subunit 5 (36... 203 5e-51
UniRef50_Q9GR09 Cluster: Replication factor C3; n=9; Aconoidasid... 202 9e-51
UniRef50_UPI000049A58F Cluster: activator 1 36 kda subunit; n=1;... 199 7e-50
UniRef50_A6R5J4 Cluster: Activator 1 subunit 3; n=1; Ajellomyces... 188 1e-46
UniRef50_O57852 Cluster: Replication factor C small subunit (RFC... 186 5e-46
UniRef50_Q5CUE4 Cluster: Replication factor RFC3 AAA+ ATpase; n=... 169 2e-45
UniRef50_Q5UZE5 Cluster: Replication factor C small subunit; n=5... 173 4e-42
UniRef50_Q977Z9 Cluster: Replication factor C small subunit; n=4... 172 9e-42
UniRef50_Q2NH89 Cluster: Replication factor C small subunit; n=2... 171 2e-41
UniRef50_A0CAF3 Cluster: Chromosome undetermined scaffold_161, w... 166 6e-40
UniRef50_Q9UXF5 Cluster: Replication factor C small subunit; n=1... 165 1e-39
UniRef50_Q8PVY4 Cluster: Replication factor C small subunit; n=1... 165 1e-39
UniRef50_Q8TZC4 Cluster: Replication factor C small subunit (RFC... 162 9e-39
UniRef50_A7DR59 Cluster: Replication factor C; n=1; Candidatus N... 155 1e-36
UniRef50_Q8SSI2 Cluster: DNA REPLICATION FACTOR C (ACTIVATOR 1) ... 155 2e-36
UniRef50_P35249 Cluster: Replication factor C subunit 4; n=34; E... 150 4e-35
UniRef50_Q8WSL8 Cluster: Replication factor C subunit 4; n=6; Pl... 150 5e-35
UniRef50_P35250 Cluster: Replication factor C subunit 2; n=103; ... 146 9e-34
UniRef50_A2E6V9 Cluster: ATPase, AAA family protein; n=2; Tricho... 145 1e-33
UniRef50_Q4Q732 Cluster: Replication factor C, subunit 2, putati... 140 4e-32
UniRef50_Q245Y3 Cluster: ATPase, AAA family protein; n=2; Oligoh... 140 6e-32
UniRef50_A0EG83 Cluster: Chromosome undetermined scaffold_95, wh... 139 1e-31
UniRef50_A0RYC0 Cluster: Replication factor C small subunit; n=1... 138 1e-31
UniRef50_A7SA25 Cluster: Predicted protein; n=2; Nematostella ve... 137 3e-31
UniRef50_Q5UP47 Cluster: Putative replication factor C small sub... 137 3e-31
UniRef50_UPI0000499C0F Cluster: Activator 1 40 kDa subunit; n=1;... 136 5e-31
UniRef50_Q8QKY2 Cluster: EsV-1-87; n=1; Ectocarpus siliculosus v... 136 7e-31
UniRef50_Q5CVS5 Cluster: Replication factor C like AAA ATpase; n... 136 7e-31
UniRef50_A4I6D8 Cluster: Replication factor C, subunit 4, putati... 135 2e-30
UniRef50_Q8QN66 Cluster: EsV-1-224; n=1; Ectocarpus siliculosus ... 132 1e-29
UniRef50_Q4WW89 Cluster: Replication factor C subunit; n=1; Aspe... 132 1e-29
UniRef50_UPI0000498FA9 Cluster: activator 1 subunit; n=1; Entamo... 130 3e-29
UniRef50_Q7R657 Cluster: GLP_574_161256_160291; n=1; Giardia lam... 130 6e-29
UniRef50_A3ABV4 Cluster: Putative uncharacterized protein; n=1; ... 129 1e-28
UniRef50_Q4UIH2 Cluster: Replication factor C subunit (RPC2 homo... 129 1e-28
UniRef50_Q9XI09 Cluster: F8K7.11 protein; n=11; Eukaryota|Rep: F... 128 1e-28
UniRef50_P40348 Cluster: Replication factor C subunit 2; n=7; Sa... 128 1e-28
UniRef50_Q8SQM0 Cluster: REPLICATION FACTOR C (ACTIVATOR 1) 37kD... 128 2e-28
UniRef50_P53016 Cluster: Replication factor C subunit 4; n=2; Ca... 128 2e-28
UniRef50_A5E7K0 Cluster: Activator 1 41 kDa subunit; n=1; Lodder... 126 1e-27
UniRef50_Q7QWA3 Cluster: GLP_177_25642_24674; n=1; Giardia lambl... 124 2e-27
UniRef50_Q8QNA5 Cluster: EsV-1-182; n=1; Ectocarpus siliculosus ... 124 3e-27
UniRef50_Q0UV64 Cluster: Putative uncharacterized protein; n=1; ... 120 4e-26
UniRef50_Q5D9J2 Cluster: SJCHGC06117 protein; n=1; Schistosoma j... 118 2e-25
UniRef50_UPI0000E4A8C8 Cluster: PREDICTED: similar to replicatio... 117 3e-25
UniRef50_Q9V2G4 Cluster: Replication factor C small subunit (RFC... 116 1e-24
UniRef50_UPI0000DB75B4 Cluster: PREDICTED: similar to CG8142-PA;... 115 2e-24
UniRef50_Q9GR07 Cluster: Replication factor C subunit 2; n=6; Pl... 113 4e-24
UniRef50_Q5UQ72 Cluster: Putative replication factor C small sub... 113 6e-24
UniRef50_Q9QXI2 Cluster: Replication factor C subunit 2; n=8; Eu... 111 2e-23
UniRef50_Q58817 Cluster: Replication factor C small subunit (RFC... 111 2e-23
UniRef50_Q7QUZ0 Cluster: GLP_61_35037_36092; n=1; Giardia lambli... 110 4e-23
UniRef50_Q5UQ47 Cluster: Putative replication factor C small sub... 110 4e-23
UniRef50_Q8TUC8 Cluster: Replication factor C subunit; n=4; Meth... 109 7e-23
UniRef50_Q86EA0 Cluster: Clone ZZD636 mRNA sequence; n=2; Bilate... 107 4e-22
UniRef50_Q6WI74 Cluster: Gp44; n=1; Vibrio phage KVP40|Rep: Gp44... 103 8e-21
UniRef50_Q64AI6 Cluster: Replication factor C subunit; n=1; uncu... 98 2e-19
UniRef50_A3CUW4 Cluster: Replication factor C; n=2; Methanomicro... 98 2e-19
UniRef50_Q8SSG6 Cluster: DNA REPLICATION FACTOR (ACTIVATOR 1) 36... 91 5e-17
UniRef50_Q5UZL1 Cluster: Replication factor C small subunit; n=2... 90 8e-17
UniRef50_Q2FUA8 Cluster: Replication factor C subunit; n=1; Meth... 90 8e-17
UniRef50_Q7T2C9 Cluster: Rfc4 protein; n=34; Fungi/Metazoa group... 85 3e-15
UniRef50_A2SRY4 Cluster: DNA polymerase III gamma/tau subunits-l... 82 2e-14
UniRef50_O67707 Cluster: DNA polymerase III gamma subunit; n=3; ... 81 4e-14
UniRef50_Q98RV1 Cluster: Replication factor C 37 KD subunit; n=1... 81 4e-14
UniRef50_Q7UQ66 Cluster: DNA polymerase III gamma and tau subuni... 78 3e-13
UniRef50_A2BZ44 Cluster: DNA polymerase, gamma and tau subunits;... 78 3e-13
UniRef50_Q8Q084 Cluster: Replication factor C large subunit; n=4... 78 3e-13
UniRef50_A3IWH2 Cluster: DNA polymerase III gamma and tau subuni... 77 5e-13
UniRef50_Q2FQR4 Cluster: Replication factor C large subunit; n=2... 76 1e-12
UniRef50_Q5GQL5 Cluster: Sliding clamp loader gp44; n=5; root|Re... 75 2e-12
UniRef50_A6R3U6 Cluster: Activator 1 37 kDa subunit; n=1; Ajello... 75 2e-12
UniRef50_A3ZPF5 Cluster: DNA polymerase III gamma and tau subuni... 75 3e-12
UniRef50_A5UMF4 Cluster: Replication factor C large subunit; n=2... 75 3e-12
UniRef50_A7HGU5 Cluster: DNA polymerase III, subunits gamma and ... 74 4e-12
UniRef50_Q9WZF2 Cluster: DNA polymerase III, gamma and tau subun... 74 6e-12
UniRef50_A0GXK7 Cluster: DNA polymerase III, subunits gamma and ... 74 6e-12
UniRef50_A0CIK7 Cluster: Chromosome undetermined scaffold_19, wh... 74 6e-12
UniRef50_Q7NAN5 Cluster: DnaX; n=1; Mycoplasma gallisepticum|Rep... 73 7e-12
UniRef50_Q2RMH2 Cluster: DNA polymerase III, subunits gamma and ... 73 7e-12
UniRef50_P38251 Cluster: Replication factor C subunit 5; n=12; S... 73 7e-12
UniRef50_Q9RRS5 Cluster: DNA polymerase III, tau/gamma subunit; ... 73 1e-11
UniRef50_A7HJR0 Cluster: DNA polymerase III, subunits gamma and ... 73 1e-11
UniRef50_A0LM15 Cluster: DNA polymerase III, subunits gamma and ... 73 1e-11
UniRef50_Q4Q084 Cluster: Replication factor C, subunit 5, putati... 73 1e-11
UniRef50_Q2JLX3 Cluster: DNA polymerase III, subunits gamma and ... 72 2e-11
UniRef50_Q4A6Z5 Cluster: DNA polymerase III gamma and tau subuni... 71 3e-11
UniRef50_Q8G6Y0 Cluster: DNA polymerase III subunit gamma/tau; n... 70 7e-11
UniRef50_Q7P6U1 Cluster: DNA polymerase III subunit gamma/tau; n... 70 7e-11
UniRef50_Q4HGU7 Cluster: DNA polymerase III gamma and tau subuni... 70 9e-11
UniRef50_A6LMU3 Cluster: DNA polymerase III, subunits gamma and ... 70 9e-11
UniRef50_A6CH16 Cluster: DNA polymerase III gamma and tau subuni... 69 2e-10
UniRef50_Q1Q394 Cluster: Similar to DNA polymerase III subunit g... 69 2e-10
UniRef50_Q03ZG9 Cluster: DNA polymerase III, gamma/tau subunit; ... 69 2e-10
UniRef50_A6EX05 Cluster: DNA polymerase III subunits gamma and t... 69 2e-10
UniRef50_A1W8D6 Cluster: DNA polymerase III, subunits gamma and ... 69 2e-10
UniRef50_A5FRM9 Cluster: DNA polymerase III, subunits gamma and ... 68 3e-10
UniRef50_Q2NH88 Cluster: Replication factor C large subunit; n=1... 68 3e-10
UniRef50_Q8YMK1 Cluster: DNA polymerase III gamma and tau subuni... 68 4e-10
UniRef50_A3DHB9 Cluster: DNA polymerase III, subunits gamma and ... 68 4e-10
UniRef50_A1AWB5 Cluster: DNA polymerase III, subunits gamma and ... 68 4e-10
UniRef50_O94697 Cluster: Replication factor C subunit 5; n=2; As... 67 5e-10
UniRef50_Q67TJ5 Cluster: DNA polymerase III gamma and tau subuni... 67 6e-10
UniRef50_Q1FKE1 Cluster: DNA polymerase III, subunits gamma and ... 67 6e-10
UniRef50_Q8DT16 Cluster: DNA polymerase III, gamma/tau subunit; ... 66 8e-10
UniRef50_Q82X62 Cluster: DnaX; DNA polymerase III (Subunits tau ... 66 8e-10
UniRef50_Q1GKB7 Cluster: DNA polymerase III subunits gamma and t... 66 8e-10
UniRef50_A6DLE8 Cluster: DNA polymerase III, gamma and tau subun... 66 8e-10
UniRef50_Q8SR43 Cluster: DNA REPLICATION FACTOR C 38kDa SUBUNIT;... 66 8e-10
UniRef50_A0B6D7 Cluster: Replication factor C large subunit; n=1... 66 8e-10
UniRef50_Q8RDI6 Cluster: DNA polymerase III, gamma/tau subunits;... 66 1e-09
UniRef50_A6NU34 Cluster: Putative uncharacterized protein; n=1; ... 66 1e-09
UniRef50_Q5QWS2 Cluster: DNA polymerase III, gamma/tau subunits;... 65 2e-09
UniRef50_Q2STA6 Cluster: DNA polymerase III gamma-tau subunits; ... 65 2e-09
UniRef50_Q1ATA7 Cluster: DNA polymerase III, subunits gamma and ... 65 2e-09
UniRef50_A1U128 Cluster: DNA polymerase III, subunits gamma and ... 65 2e-09
UniRef50_P40938 Cluster: Replication factor C subunit 3; n=64; E... 65 2e-09
UniRef50_Q6MH32 Cluster: DNA polymerase III gamma and tau subuni... 65 3e-09
UniRef50_Q5FTB4 Cluster: DNA polymerase III subunit gamma/tau; n... 65 3e-09
UniRef50_Q4UIQ4 Cluster: Replication factor C subunit, putative;... 65 3e-09
UniRef50_A2E870 Cluster: Putative uncharacterized protein; n=1; ... 65 3e-09
UniRef50_O25419 Cluster: DNA polymerase III gamma and tau subuni... 64 3e-09
UniRef50_A6W567 Cluster: DNA polymerase III, subunits gamma and ... 64 3e-09
UniRef50_A4SWQ4 Cluster: DNA polymerase III, subunits gamma and ... 64 3e-09
UniRef50_A1ISN1 Cluster: DNA polymerase III tau and gamma chains... 64 3e-09
UniRef50_Q1IQ74 Cluster: DNA polymerase III, subunits gamma and ... 64 5e-09
UniRef50_A4E9Y5 Cluster: Putative uncharacterized protein; n=1; ... 64 5e-09
UniRef50_A3WNZ0 Cluster: DNA polymerase III, gamma/tau subunits;... 64 5e-09
UniRef50_Q9PR58 Cluster: DNA polymerase III gamma-tau subunits; ... 64 6e-09
UniRef50_Q2GI84 Cluster: DNA polymerase III, subunits gamma and ... 64 6e-09
UniRef50_Q1K472 Cluster: DNA polymerase III, subunits gamma and ... 64 6e-09
UniRef50_Q1EZ15 Cluster: DNA polymerase III, subunits gamma and ... 64 6e-09
UniRef50_A6DD60 Cluster: DNA polymerase III subunits gamma and t... 63 8e-09
UniRef50_A3JQW8 Cluster: DNA polymerase III subunits gamma and t... 63 8e-09
UniRef50_A2RNZ7 Cluster: DNA polymerase III subunits gamma / tau... 63 8e-09
UniRef50_Q9SN33 Cluster: Putative uncharacterized protein F28A21... 63 8e-09
UniRef50_Q9FK71 Cluster: Similarity to DNA polymerase III; n=3; ... 63 8e-09
UniRef50_Q899U1 Cluster: DNA polymerase III subunits gamma and t... 63 1e-08
UniRef50_A7BAA1 Cluster: Putative uncharacterized protein; n=1; ... 63 1e-08
UniRef50_A1K419 Cluster: DNA polymerase III subunit Tau; n=2; Az... 63 1e-08
UniRef50_A3FQ95 Cluster: Replication factor C subunit 5, putativ... 63 1e-08
UniRef50_Q5L3X6 Cluster: DNA-directed DNA polymerase III gamma a... 62 1e-08
UniRef50_Q2RZH6 Cluster: DNA polymerase III, subunits gamma and ... 62 1e-08
UniRef50_Q74GZ9 Cluster: DNA polymerase III, gamma and tau subun... 62 2e-08
UniRef50_A5YSV5 Cluster: Replication factor C small subunit II; ... 62 2e-08
UniRef50_A1RWU6 Cluster: Replication factor C large subunit; n=1... 62 2e-08
UniRef50_Q8K983 Cluster: DNA polymerase III subunit gamma; n=4; ... 62 2e-08
UniRef50_Q7VRB7 Cluster: DNA polymerase III subunit gamma; n=2; ... 62 2e-08
UniRef50_Q74L01 Cluster: DNA polymerase III subunit gamma/tau; n... 62 2e-08
UniRef50_A7CST5 Cluster: DNA polymerase III, subunits gamma and ... 62 2e-08
UniRef50_Q7RNS4 Cluster: Drosophila melanogaster BcDNA.LD06837, ... 62 2e-08
UniRef50_A3CTR4 Cluster: Replication factor C large subunit; n=1... 62 2e-08
UniRef50_A2SQR6 Cluster: Replication factor C large subunit; n=1... 62 2e-08
UniRef50_A3ISF6 Cluster: DNA-directed DNA polymerase; n=3; Cyano... 61 3e-08
UniRef50_Q56C06 Cluster: Gp44 clamp-loader subunit; n=1; Enterob... 61 3e-08
UniRef50_Q7WMF3 Cluster: DNA polymerase III subunit Tau; n=4; Bo... 61 4e-08
UniRef50_A4M5U6 Cluster: DNA polymerase III, subunits gamma and ... 61 4e-08
UniRef50_A4RWV3 Cluster: Predicted protein; n=8; Viridiplantae|R... 61 4e-08
UniRef50_P09122 Cluster: DNA polymerase III subunit gamma/tau; n... 61 4e-08
UniRef50_A0NIM4 Cluster: DNA-dependent DNA polymerase III, gamma... 60 6e-08
UniRef50_Q6YPV8 Cluster: DNA polymerase III, gamma/tau subunit; ... 60 7e-08
UniRef50_Q6G4V0 Cluster: DNA polymerase III subunit tau; n=6; Rh... 60 7e-08
UniRef50_A6QBX8 Cluster: DNA polymerase III, gamma/tau subunits;... 60 7e-08
UniRef50_A0NSR3 Cluster: DNA polymerase III subunit delta'; n=1;... 60 7e-08
UniRef50_Q8DJU0 Cluster: DNA polymerase III gamma and tau subuni... 60 1e-07
UniRef50_Q3A8S0 Cluster: Putative DNA polymerase III, gamma/tau ... 60 1e-07
UniRef50_Q1N199 Cluster: DNA polymerase III subunits gamma and t... 60 1e-07
UniRef50_Q7NK69 Cluster: DNA polymerase III gamma and tau subuni... 59 1e-07
UniRef50_Q21L32 Cluster: DNA polymerase III, subunits gamma and ... 59 1e-07
UniRef50_Q0B0W5 Cluster: DNA-directed DNA polymerase; n=1; Syntr... 59 1e-07
UniRef50_Q9PQU7 Cluster: Conserved hypothetical ATP/GTP-binding ... 59 2e-07
UniRef50_Q73G99 Cluster: DNA polymerase III, gamma and tau subun... 59 2e-07
UniRef50_Q3IKN4 Cluster: Putative DnaX, DNA polymerase III, gamm... 59 2e-07
UniRef50_Q2GDS0 Cluster: Putative DNA polymerase III, gamma/tau ... 59 2e-07
UniRef50_Q7CZ44 Cluster: AGR_C_2759p; n=6; Rhizobiaceae|Rep: AGR... 59 2e-07
UniRef50_Q022F8 Cluster: DNA polymerase III, subunits gamma and ... 59 2e-07
UniRef50_A7GZC8 Cluster: Protein EbsC; n=13; Campylobacter|Rep: ... 58 2e-07
UniRef50_A3YHQ6 Cluster: DNA polymerase III subunits gamma and t... 58 2e-07
UniRef50_Q7QR65 Cluster: GLP_301_13398_14519; n=1; Giardia lambl... 58 2e-07
UniRef50_Q5CPV9 Cluster: DNA replication repC1, AAA+ ATpase with... 58 2e-07
UniRef50_Q6NC57 Cluster: Possible DNA polymerase III tau subunit... 58 3e-07
UniRef50_Q6MDZ7 Cluster: Probable DNA-directed DNA polymerase II... 58 3e-07
UniRef50_Q5P9F0 Cluster: DNA polymerase III gamma subunit; n=2; ... 58 3e-07
UniRef50_Q0ASK9 Cluster: DNA polymerase III, subunits gamma and ... 58 3e-07
UniRef50_Q89LM6 Cluster: Bll4517 protein; n=11; Bradyrhizobiacea... 58 4e-07
UniRef50_Q7NXL6 Cluster: DNA polymerase subunits gamma and tau; ... 58 4e-07
UniRef50_Q4FNB0 Cluster: DNA-directed DNA polymerase gamma/tau s... 58 4e-07
UniRef50_Q18U88 Cluster: DNA polymerase III, subunits gamma and ... 58 4e-07
UniRef50_Q117S8 Cluster: DNA polymerase III, subunits gamma and ... 58 4e-07
UniRef50_Q057E1 Cluster: DNA polymerase III, g and t subunits; n... 58 4e-07
UniRef50_A6VYC4 Cluster: DNA polymerase III, subunits gamma and ... 58 4e-07
UniRef50_A6GQQ4 Cluster: AAA ATPase, central region; n=1; Limnob... 58 4e-07
UniRef50_A5KSU9 Cluster: DNA polymerase III, subunits gamma and ... 58 4e-07
UniRef50_Q8G0U2 Cluster: DNA polymerase III, delta prime subunit... 57 5e-07
UniRef50_A7HD56 Cluster: DNA polymerase III, delta prime subunit... 57 5e-07
UniRef50_Q41AZ0 Cluster: DNA-directed DNA polymerase; n=1; Exigu... 57 7e-07
UniRef50_Q1Z5S3 Cluster: DNA polymerase III subunits gamma and t... 57 7e-07
UniRef50_A4BJR3 Cluster: DNA polymerase III subunits gamma and t... 57 7e-07
UniRef50_Q5UQE8 Cluster: Putative replication factor C small sub... 57 7e-07
UniRef50_Q83FL2 Cluster: DNA polymerase III gamma and tau subuni... 56 9e-07
UniRef50_Q6FZU9 Cluster: DNA polymerase III, delta prime subunit... 56 9e-07
UniRef50_Q6F0D9 Cluster: DNA polymerase III gamma and tau subuni... 56 9e-07
UniRef50_Q9GQW6 Cluster: Replication factor C subunit 1; n=6; Pl... 56 9e-07
UniRef50_Q2LYB8 Cluster: DNA polymerase III subunit gamma/tau; n... 56 1e-06
UniRef50_O31001 Cluster: DNA polymerase III holoenzyme tau subun... 56 1e-06
UniRef50_A6GJ36 Cluster: DNA polymerase III, gamma and tau subun... 56 1e-06
UniRef50_A3EPW1 Cluster: Putative DNA polymerase III, gamma/tau ... 56 1e-06
UniRef50_UPI0000DAE674 Cluster: hypothetical protein Rgryl_01000... 56 2e-06
UniRef50_UPI00006CAE51 Cluster: ATPase, AAA family protein; n=1;... 56 2e-06
UniRef50_UPI000049936A Cluster: Activator 1 140 kDa subunit; n=1... 56 2e-06
UniRef50_Q6KIL7 Cluster: DNA polymerase III subunit gamma and ta... 56 2e-06
UniRef50_Q1QAW7 Cluster: DNA polymerase III, subunits gamma and ... 56 2e-06
UniRef50_A5WFF8 Cluster: DNA polymerase III, subunits gamma and ... 56 2e-06
UniRef50_A3V6X7 Cluster: Putative uncharacterized protein; n=1; ... 56 2e-06
UniRef50_A6MVQ4 Cluster: DNA polymerase III; n=1; Rhodomonas sal... 56 2e-06
UniRef50_A2Y6S3 Cluster: Putative uncharacterized protein; n=6; ... 56 2e-06
UniRef50_Q4QEE0 Cluster: Putative uncharacterized protein; n=3; ... 56 2e-06
UniRef50_UPI000050FCE9 Cluster: COG2812: DNA polymerase III, gam... 55 2e-06
UniRef50_Q1GV06 Cluster: DNA polymerase III, subunits gamma and ... 55 2e-06
UniRef50_A5IZC8 Cluster: DNA polymerase III subunit gamma and TA... 55 2e-06
UniRef50_A5D6B1 Cluster: DNA polymerase III, gamma/tau subunits;... 55 2e-06
UniRef50_A0JSD4 Cluster: DNA polymerase III, subunits gamma and ... 55 2e-06
UniRef50_Q5V1F7 Cluster: Replication factor C large subunit; n=5... 55 2e-06
UniRef50_UPI0000E87FCE Cluster: DNA-directed DNA polymerase; n=1... 55 3e-06
UniRef50_UPI0000E0E6B7 Cluster: putative DnaX, DNA polymerase II... 55 3e-06
UniRef50_Q8EFG0 Cluster: DNA polymerase III, gamma and tau subun... 55 3e-06
UniRef50_Q6D7Z9 Cluster: DNA polymerase III subunit tau; n=1; Pe... 55 3e-06
UniRef50_A0L8F3 Cluster: DNA polymerase III, subunits gamma and ... 55 3e-06
UniRef50_Q63UU8 Cluster: DNA polymerase III subunit gamma; n=19;... 54 4e-06
UniRef50_Q39FP4 Cluster: DNA-directed DNA polymerase; n=13; Burk... 54 4e-06
UniRef50_A6LPM5 Cluster: DNA polymerase III delta' subunit; n=1;... 54 4e-06
UniRef50_A2A0B1 Cluster: DNA polymerase III subunit gamma/tau; n... 54 4e-06
UniRef50_A1SDH6 Cluster: DNA polymerase III, subunits gamma and ... 54 4e-06
UniRef50_A1S561 Cluster: DNA-directed DNA polymerase; n=1; Shewa... 54 4e-06
UniRef50_A3H683 Cluster: AAA ATPase, central region; n=1; Caldiv... 54 4e-06
UniRef50_Q9I3I1 Cluster: DNA polymerase subunits gamma and tau; ... 54 5e-06
UniRef50_Q7MUS1 Cluster: DNA polymerase III, gamma and tau subun... 54 5e-06
UniRef50_O84338 Cluster: DNA Pol III Gamma and Tau; n=8; Chlamyd... 54 5e-06
UniRef50_Q0C591 Cluster: DNA polymerase III, subunits gamma and ... 54 5e-06
UniRef50_A6FVT5 Cluster: Replication factor C small subunit; n=1... 54 5e-06
UniRef50_A6FTR6 Cluster: DNA-directed DNA polymerase gamma/tau s... 54 5e-06
UniRef50_A5Z8F9 Cluster: Putative uncharacterized protein; n=2; ... 54 5e-06
UniRef50_A1RIP8 Cluster: DNA polymerase III, subunits gamma and ... 54 5e-06
UniRef50_Q6AGY6 Cluster: DNA polymerase III, gamma and tau subun... 54 6e-06
UniRef50_Q1GTQ0 Cluster: DNA-directed DNA polymerase; n=1; Sphin... 54 6e-06
UniRef50_Q0HHZ2 Cluster: DNA polymerase III, subunits gamma and ... 54 6e-06
UniRef50_Q54MH9 Cluster: Replication factor C subunit; n=1; Dict... 54 6e-06
UniRef50_Q22W14 Cluster: Replication factor C subunit, putative;... 54 6e-06
UniRef50_A2G4Z2 Cluster: Differentiation specific element bindin... 54 6e-06
UniRef50_O29072 Cluster: Replication factor C large subunit; n=1... 54 6e-06
UniRef50_Q81W10 Cluster: DNA polymerase III, delta prime subunit... 53 8e-06
UniRef50_A5UTH5 Cluster: DNA polymerase III, subunits gamma and ... 53 8e-06
UniRef50_A3TI73 Cluster: DNA polymerase III subunits gamma and t... 53 8e-06
UniRef50_A3QF53 Cluster: DNA polymerase III, subunits gamma and ... 53 8e-06
UniRef50_A1V9U7 Cluster: DNA polymerase III, subunits gamma and ... 53 8e-06
UniRef50_Q57Y55 Cluster: Putative uncharacterized protein; n=1; ... 53 8e-06
UniRef50_Q4DDA7 Cluster: Putative uncharacterized protein; n=2; ... 53 8e-06
UniRef50_A3D5Q4 Cluster: DNA polymerase III, subunits gamma and ... 53 1e-05
UniRef50_Q9V2G3 Cluster: Replication factor C large subunit; n=4... 53 1e-05
UniRef50_Q83DN8 Cluster: DNA polymerase III, gamma and tau subun... 52 1e-05
UniRef50_Q15RT3 Cluster: DNA polymerase III, subunits gamma and ... 52 1e-05
UniRef50_A7HXT6 Cluster: ATPase involved in DNA replication; n=5... 52 1e-05
UniRef50_Q9PCH3 Cluster: DNA polymerase III subunit; n=12; Xanth... 52 2e-05
UniRef50_Q7M7T5 Cluster: DNA POLYMERASE III SUBUNITS GAMMA AND T... 52 2e-05
UniRef50_Q1MPV7 Cluster: DNA polymerase III, gamma/tau subunits;... 52 2e-05
UniRef50_A7JFN6 Cluster: DNA polymerase III; n=11; Francisella t... 52 2e-05
UniRef50_A4SMN2 Cluster: DNA polymerase III, subunits gamma and ... 52 2e-05
UniRef50_A0Z9H0 Cluster: DNA polymerase III subunits gamma and t... 52 2e-05
UniRef50_A0KY06 Cluster: DNA polymerase III, subunits gamma and ... 52 2e-05
UniRef50_Q9WYX8 Cluster: UPF0189 protein TM_0508; n=4; Thermotog... 52 2e-05
UniRef50_P43746 Cluster: DNA polymerase III subunit gamma/tau; n... 52 2e-05
UniRef50_Q9CNR3 Cluster: DnaX; n=2; Pasteurellaceae|Rep: DnaX - ... 52 3e-05
UniRef50_Q8DB24 Cluster: DNA polymerase III, gamma/tau subunits;... 52 3e-05
UniRef50_Q4L3D4 Cluster: DNA polymerase III gamma and tau subuni... 52 3e-05
UniRef50_Q1YTB0 Cluster: DNA polymerase III subunits gamma and t... 52 3e-05
UniRef50_A6QCT9 Cluster: ATPase, AAA family; n=22; Epsilonproteo... 52 3e-05
UniRef50_A5V2B2 Cluster: DNA polymerase III, subunits gamma and ... 52 3e-05
UniRef50_A4C5P9 Cluster: Putative DnaX, DNA polymerase III, gamm... 52 3e-05
UniRef50_A0YC05 Cluster: DNA polymerase III subunits gamma and t... 52 3e-05
UniRef50_Q9RKL5 Cluster: DNA polymerase III subunit gamma; n=2; ... 51 3e-05
UniRef50_Q98RG0 Cluster: DNA POLYMERASE III SUBUNIT GAMMA AND TA... 51 3e-05
UniRef50_A0UY99 Cluster: DNA polymerase III, subunits gamma and ... 51 3e-05
UniRef50_A2E9V5 Cluster: Differentiation specific element bindin... 51 3e-05
UniRef50_Q9RMF0 Cluster: DNA polymerase III subunits tau and gam... 51 5e-05
UniRef50_Q8D230 Cluster: DnaX protein; n=1; Wigglesworthia gloss... 51 5e-05
UniRef50_Q2SIX1 Cluster: DNA polymerase III, gamma/tau subunit; ... 51 5e-05
UniRef50_Q12LL5 Cluster: DNA polymerase III, subunits gamma and ... 51 5e-05
UniRef50_Q0LFS9 Cluster: DNA polymerase III, subunits gamma and ... 51 5e-05
UniRef50_A5EY35 Cluster: DNA polymerase III, subunits gamma and ... 51 5e-05
UniRef50_A1I9Q5 Cluster: DNA-directed DNA polymerase; n=1; Candi... 51 5e-05
UniRef50_Q9YBS5 Cluster: Replication factor C large subunit; n=1... 51 5e-05
UniRef50_Q927D7 Cluster: DnaX protein; n=17; Bacillales|Rep: Dna... 50 6e-05
UniRef50_Q7V9L4 Cluster: DNA polymerase III gamma/tau subunit; n... 50 6e-05
UniRef50_Q6NJY2 Cluster: DNA polymerase III subunit gamma/tau; n... 50 6e-05
UniRef50_Q6MP27 Cluster: DNA polymerase III delta' subunit; n=1;... 50 6e-05
UniRef50_Q6ABA1 Cluster: DNA polymerase III subunit gamma; n=2; ... 50 6e-05
UniRef50_Q609A7 Cluster: DNA polymerase III, gamma and tau subun... 50 6e-05
UniRef50_Q1YNM8 Cluster: DNA polymerase III, delta prime subunit... 50 6e-05
UniRef50_A6BZZ4 Cluster: DNA polymerase III, tau/gamma subunit; ... 50 6e-05
UniRef50_Q5KCB2 Cluster: Sister chromatid cohesion-related prote... 50 6e-05
UniRef50_Q899F8 Cluster: DNA polymerase III delta subunit; n=1; ... 50 8e-05
UniRef50_Q47XQ9 Cluster: DNA polymerase III, gamma/tau subunit; ... 50 8e-05
UniRef50_Q3SLE5 Cluster: DNA polymerase subunits gamma and tau; ... 50 8e-05
UniRef50_Q3J800 Cluster: DNA-directed DNA polymerase; n=1; Nitro... 50 8e-05
UniRef50_P73507 Cluster: DNA polymerase III subunit; n=1; Synech... 50 8e-05
UniRef50_Q1FL61 Cluster: DNA polymerase III, delta prime subunit... 50 8e-05
UniRef50_A4XJ39 Cluster: DNA polymerase III, subunits gamma and ... 50 8e-05
UniRef50_Q6ANB4 Cluster: Related to DNA polymerase III, subunit ... 50 1e-04
UniRef50_Q26BL4 Cluster: ATPase related to the helicase subunit ... 50 1e-04
UniRef50_A6EHG2 Cluster: DNA polymerase III, tau and gamma subun... 50 1e-04
UniRef50_A5NZD9 Cluster: DNA-directed DNA polymerase; n=2; Alpha... 50 1e-04
UniRef50_A1GG63 Cluster: DNA polymerase III, subunits gamma and ... 50 1e-04
UniRef50_Q8ZYK3 Cluster: Replication factor C large subunit; n=4... 50 1e-04
UniRef50_Q4FLY1 Cluster: Probable DNA polymerase III; n=2; Candi... 49 1e-04
UniRef50_A4CK17 Cluster: DNA polymerase III subunit gamma/tau; n... 49 1e-04
UniRef50_Q9KT51 Cluster: DNA polymerase III, subunits gamma and ... 49 2e-04
UniRef50_Q8KCT6 Cluster: DNA polymerase III, gamma and tau subun... 49 2e-04
UniRef50_Q87N27 Cluster: DNA polymerase III, delta prime subunit... 49 2e-04
UniRef50_A6FBQ8 Cluster: Hypothetical DNA polymerase III, subuni... 49 2e-04
UniRef50_Q17LI6 Cluster: Replication factor C large subunit, put... 49 2e-04
UniRef50_Q975D4 Cluster: Replication factor C large subunit; n=5... 49 2e-04
UniRef50_Q5GRZ7 Cluster: ATPase involved in DNA replication, Hol... 48 2e-04
UniRef50_Q2GE30 Cluster: Putative uncharacterized protein; n=1; ... 48 2e-04
UniRef50_O83970 Cluster: DNA polymerase III, subunits gamma and ... 48 2e-04
UniRef50_Q0IE22 Cluster: DNA polymerase III, subunits gamma and ... 48 2e-04
UniRef50_UPI0000499373 Cluster: activator 1 subunit; n=2; Entamo... 48 3e-04
UniRef50_O67486 Cluster: Putative uncharacterized protein; n=1; ... 48 3e-04
UniRef50_Q84FP3 Cluster: DNA polymerase III gamma and tau subuni... 48 3e-04
UniRef50_A4B798 Cluster: DNA polymerase III subunit delta; n=1; ... 48 3e-04
UniRef50_Q830L8 Cluster: DNA polymerase III, delta prime subunit... 48 4e-04
UniRef50_Q11HZ8 Cluster: DNA polymerase III, delta prime subunit... 48 4e-04
UniRef50_Q0BT78 Cluster: DNA polymerase III, delta' subunit; n=2... 48 4e-04
UniRef50_A7M2L2 Cluster: Putative uncharacterized protein; n=2; ... 48 4e-04
UniRef50_A0M2F5 Cluster: DNA polymerase III subunit gamma/tau; n... 48 4e-04
UniRef50_P63976 Cluster: DNA polymerase III subunit gamma/tau; n... 48 4e-04
UniRef50_UPI0000DB6BAC Cluster: PREDICTED: similar to cutlet CG3... 47 6e-04
UniRef50_Q9ABG0 Cluster: DNA polymerase III, gamma and tau subun... 47 6e-04
UniRef50_Q3SIN0 Cluster: DNA polymerase III delta prime subunit;... 47 6e-04
UniRef50_Q4AHZ6 Cluster: DNA-directed DNA polymerase; n=1; Chlor... 47 6e-04
UniRef50_Q3F084 Cluster: DNA polymerase III subunit gamma/tau; n... 47 6e-04
UniRef50_Q1ZGI5 Cluster: DNA polymerase III subunits gamma and t... 47 6e-04
UniRef50_Q18C99 Cluster: DNA polymerase III subunit gamma/tau; n... 47 6e-04
UniRef50_Q0GL66 Cluster: DNA polymerase III, subunits gamma and ... 47 6e-04
UniRef50_A4B0N9 Cluster: DNA polymerase III subunits gamma and t... 47 6e-04
UniRef50_Q96S08 Cluster: Protein CTF18 homolog; n=22; cellular o... 35 7e-04
UniRef50_Q8XHN4 Cluster: DNA polymerase III delta' subunit; n=3;... 47 7e-04
UniRef50_Q7NRQ8 Cluster: DNA-directed DNA polymerase III, delta ... 47 7e-04
UniRef50_Q74AW9 Cluster: DNA polymerase III, delta prime subunit... 47 7e-04
UniRef50_Q6FAW7 Cluster: DNA polymerase III, tau and gamma subun... 47 7e-04
UniRef50_Q661F8 Cluster: DNA polymerase III, subunits gamma and ... 47 7e-04
UniRef50_Q9AIX4 Cluster: DNA polymerase III-like protein; n=2; W... 47 7e-04
UniRef50_Q15U04 Cluster: DNA-directed DNA polymerase; n=1; Pseud... 47 7e-04
UniRef50_Q0EXX3 Cluster: DNA polymerase III subunits gamma and t... 47 7e-04
UniRef50_Q31I98 Cluster: DNA polymerase III subunit gamma and ta... 46 0.001
UniRef50_UPI00015BB275 Cluster: replication factor C large subun... 46 0.001
UniRef50_Q8EY86 Cluster: DNA polymerase III subunit gamma; n=4; ... 46 0.001
UniRef50_Q3AG11 Cluster: Putative DNA polymerase III, delta prim... 46 0.001
UniRef50_Q2JGD4 Cluster: DNA polymerase III, subunits gamma and ... 46 0.001
UniRef50_A5KMD2 Cluster: Putative uncharacterized protein; n=3; ... 46 0.001
UniRef50_A5CF91 Cluster: DNA polymerase III gamma and tau chains... 46 0.001
UniRef50_A3VTZ3 Cluster: DNA polymerase III, delta prime subunit... 46 0.001
UniRef50_A0L8T4 Cluster: DNA polymerase III, delta prime subunit... 46 0.001
UniRef50_Q58294 Cluster: Replication factor C large subunit; n=6... 46 0.001
UniRef50_Q8EU50 Cluster: DNA polymerase III delta subunit; n=1; ... 46 0.002
UniRef50_Q1UAA1 Cluster: DNA polymerase III delta prime subunit;... 46 0.002
UniRef50_Q1NDV9 Cluster: DNA polymerase III delta prime subunit;... 46 0.002
UniRef50_Q1D8K6 Cluster: DNA polymerase III, delta' subunit; n=2... 46 0.002
UniRef50_A5IBP2 Cluster: DNA polymerase III, delta prime subunit... 46 0.002
UniRef50_Q6YPF5 Cluster: Putative DNA polymerase III like protei... 46 0.002
UniRef50_Q6RHU1 Cluster: Gp44 clamp loader subunit; n=2; T4-like... 46 0.002
UniRef50_P37540 Cluster: DNA polymerase III subunit delta'; n=8;... 46 0.002
UniRef50_Q9ZCA1 Cluster: DNA POLYMERASE III SUBUNITS GAMMA AND T... 45 0.002
UniRef50_Q6KHC7 Cluster: ATPase; n=1; Mycoplasma mobile|Rep: ATP... 45 0.002
UniRef50_A3WC72 Cluster: DNA polymerase III delta prime subunit;... 45 0.002
UniRef50_A3VPV6 Cluster: DNA polymerase III subunits gamma and t... 45 0.002
UniRef50_A0UX52 Cluster: DNA-directed DNA polymerase; n=1; Clost... 45 0.002
UniRef50_P60373 Cluster: Replication factor C large subunit; n=1... 45 0.002
UniRef50_Q8A7B5 Cluster: DNA polymerase III subunit gamma/tau; n... 45 0.003
UniRef50_Q67JB2 Cluster: DNA polymerase III delta' subunit; n=1;... 45 0.003
UniRef50_Q5NNJ5 Cluster: DNA polymerase III delta prime subunit;... 45 0.003
UniRef50_Q5E417 Cluster: DNA polymerase III, delta' subunit; n=1... 45 0.003
UniRef50_Q0VNM5 Cluster: DNA polymerase III, gamma and tau subun... 45 0.003
UniRef50_Q043K3 Cluster: Helicase subunit of the Holliday juncti... 45 0.003
UniRef50_Q21350 Cluster: Putative uncharacterized protein; n=2; ... 45 0.003
UniRef50_A5K9Q8 Cluster: Replication factor c, putative; n=1; Pl... 45 0.003
UniRef50_P74876 Cluster: DNA polymerase III subunit tau (EC 2.7.... 45 0.003
UniRef50_Q97M98 Cluster: DNA-polymerase III, gamma subunit; n=1;... 44 0.004
UniRef50_Q3WEK6 Cluster: DNA-directed DNA polymerase; n=2; Frank... 44 0.004
UniRef50_Q1QXJ7 Cluster: DNA polymerase III, subunits gamma and ... 44 0.004
UniRef50_Q1JXH0 Cluster: DNA polymerase III, delta prime subunit... 44 0.004
UniRef50_Q0S8Z6 Cluster: DNA polymerase III subunit; n=12; Coryn... 44 0.004
UniRef50_Q0FAY2 Cluster: DNA polymerase III subunit delta; n=1; ... 44 0.004
UniRef50_A1HPS4 Cluster: DNA polymerase III, delta prime subunit... 44 0.004
UniRef50_Q9KQI3 Cluster: DNA polymerase III, delta prime subunit... 44 0.005
UniRef50_Q181E8 Cluster: Putative DNA polymerase III, delta' sub... 44 0.005
UniRef50_Q7R1M6 Cluster: GLP_28_54688_52016; n=1; Giardia lambli... 44 0.005
UniRef50_Q5SH70 Cluster: DNA polymerase III delta prime subunit;... 44 0.007
UniRef50_Q28SW9 Cluster: DNA-directed DNA polymerase; n=25; Rhod... 44 0.007
UniRef50_Q2LUA9 Cluster: DNA polymerase III, gamma subunit; n=1;... 43 0.009
UniRef50_Q1PVI5 Cluster: Similar to DNA polymerase III clamp loa... 43 0.009
UniRef50_A7INF3 Cluster: DNA-directed DNA polymerase; n=1; Xanth... 43 0.009
UniRef50_A0Q156 Cluster: ATPase, AAA family; n=1; Clostridium no... 43 0.009
UniRef50_A0M6J3 Cluster: DNA polymerase III subunit delta'; n=14... 43 0.009
UniRef50_Q9C587 Cluster: Replication factor C large subunit-like... 43 0.009
UniRef50_A7D2R8 Cluster: AAA ATPase, central domain protein; n=1... 43 0.009
UniRef50_UPI000058605A Cluster: PREDICTED: similar to replicatio... 43 0.012
UniRef50_Q8QNA1 Cluster: EsV-1-187; n=1; Ectocarpus siliculosus ... 43 0.012
UniRef50_Q1QX48 Cluster: DNA polymerase III, delta prime subunit... 43 0.012
UniRef50_Q0ZHG9 Cluster: DNA polymerase III subunits gamma and t... 43 0.012
UniRef50_Q8NTR0 Cluster: DNA polymerase III, gamma/tau subunits;... 42 0.016
UniRef50_A7HK43 Cluster: DNA polymerase III gamma/tau subunits-l... 42 0.016
UniRef50_A4BDY7 Cluster: DNA polymerase III subunit delta; n=1; ... 42 0.016
UniRef50_O60182 Cluster: Replication factor C subunit 1; n=1; Sc... 42 0.016
UniRef50_UPI0000D56D44 Cluster: PREDICTED: similar to CG33122-PA... 42 0.021
UniRef50_Q4TFR9 Cluster: Chromosome undetermined SCAF4252, whole... 42 0.021
UniRef50_Q2BG76 Cluster: DNA polymerase III subunit delta; n=1; ... 42 0.021
UniRef50_Q21K67 Cluster: DNA polymerase III, delta prime subunit... 42 0.021
UniRef50_Q1N4U3 Cluster: DNA polymerase III subunit delta; n=1; ... 42 0.021
UniRef50_A2DH92 Cluster: Transcription factor, putative; n=1; Tr... 42 0.021
UniRef50_Q9USQ1 Cluster: Chromosome transmission fidelity protei... 42 0.021
UniRef50_Q4SYS4 Cluster: Chromosome undetermined SCAF11966, whol... 42 0.028
UniRef50_A0LEK6 Cluster: DNA polymerase III, delta prime subunit... 42 0.028
UniRef50_Q1ZXM6 Cluster: AAA ATPase domain-containing protein; n... 42 0.028
UniRef50_P35251 Cluster: Replication factor C subunit 1; n=56; E... 42 0.028
UniRef50_Q8KC20 Cluster: DNA polymerase III, delta subunit, puta... 41 0.036
UniRef50_Q5P0G2 Cluster: DNA-directed DNA polymerase III, delta ... 41 0.036
UniRef50_Q1F0S1 Cluster: DNA polymerase III delta prime subunit;... 41 0.036
UniRef50_A5Z3R5 Cluster: Putative uncharacterized protein; n=2; ... 41 0.036
UniRef50_A5UZ90 Cluster: DNA polymerase III, delta prime subunit... 41 0.036
UniRef50_A4SXG7 Cluster: DNA-directed DNA polymerase; n=1; Polyn... 41 0.036
UniRef50_A3ZYH4 Cluster: DNA polymerase III, tau/gamma subunit; ... 41 0.036
UniRef50_Q18841 Cluster: Putative uncharacterized protein rfc-1;... 41 0.036
UniRef50_P43748 Cluster: DNA polymerase III subunit delta'; n=17... 41 0.036
UniRef50_Q89AG8 Cluster: DNA polymerase III subunit delta'; n=1;... 41 0.036
UniRef50_Q73K31 Cluster: DNA polymerase III, gamma and tau subun... 41 0.048
UniRef50_Q5F9P6 Cluster: Putative DNA polymerase III, delta' sub... 41 0.048
UniRef50_Q1H170 Cluster: DNA polymerase III, delta prime subunit... 41 0.048
UniRef50_Q0VQM5 Cluster: DNA polymerase III, delta prime subunit... 41 0.048
UniRef50_A4GJ98 Cluster: DNA polymerase III subunits gamma/tau; ... 41 0.048
UniRef50_A0YGP8 Cluster: DNA polymerase III subunit delta; n=1; ... 41 0.048
UniRef50_Q92FA1 Cluster: Lin0205 protein; n=13; Listeria|Rep: Li... 40 0.064
UniRef50_Q5FKX4 Cluster: Chromosomal segregation helicase; n=113... 40 0.064
UniRef50_Q2SIR6 Cluster: DNA polymerase III delta prime subunit;... 40 0.064
UniRef50_A4XHH7 Cluster: DNA-directed DNA polymerase; n=1; Caldi... 40 0.064
UniRef50_A3Y409 Cluster: DNA polymerase III subunit delta; n=3; ... 40 0.064
UniRef50_A3IDG6 Cluster: DNA polymerase III subunit delta'; n=1;... 40 0.064
UniRef50_A2FVE1 Cluster: ATPase, AAA family protein; n=2; Tricho... 40 0.064
UniRef50_UPI0001554DFB Cluster: PREDICTED: similar to olfactory ... 40 0.084
UniRef50_Q6NU40 Cluster: MGC81266 protein; n=3; Eumetazoa|Rep: M... 40 0.084
UniRef50_Q8RDE3 Cluster: ATPase involved in DNA replication; n=3... 40 0.084
UniRef50_Q482J4 Cluster: DNA polymerase III, delta prime subunit... 40 0.084
UniRef50_A6NQC8 Cluster: Putative uncharacterized protein; n=1; ... 40 0.084
UniRef50_A4CAL1 Cluster: Putative DNA polymerase III delta' subu... 40 0.084
UniRef50_Q7RGG9 Cluster: ATPase, AAA family, putative; n=5; Plas... 40 0.084
UniRef50_Q75DK2 Cluster: ABR019Cp; n=1; Eremothecium gossypii|Re... 40 0.084
UniRef50_UPI0000E0FA0C Cluster: DNA polymerase III subunit delta... 40 0.11
UniRef50_Q2RTP3 Cluster: DNA-directed DNA polymerase; n=1; Rhodo... 40 0.11
UniRef50_Q18U99 Cluster: ATPase involved in DNA replication-like... 40 0.11
UniRef50_A7D8N2 Cluster: DNA-directed DNA polymerase; n=2; Methy... 40 0.11
UniRef50_A4M640 Cluster: AAA ATPase, central domain protein; n=1... 40 0.11
UniRef50_Q2NU34 Cluster: DNA polymerase III delta prime subunit;... 39 0.15
UniRef50_A3UCJ6 Cluster: DNA polymerase III, delta prime subunit... 39 0.15
UniRef50_P38630 Cluster: Replication factor C subunit 1; n=11; S... 39 0.15
UniRef50_UPI00005EFA43 Cluster: COG0470: ATPase involved in DNA ... 39 0.19
UniRef50_A7CNF2 Cluster: ATPase involved in DNA replication-like... 39 0.19
UniRef50_A3S516 Cluster: DNA polymerase III subunit delta; n=1; ... 39 0.19
UniRef50_A1U0Y9 Cluster: DNA-directed DNA polymerase; n=3; Marin... 39 0.19
UniRef50_A0RRQ8 Cluster: ATPase, AAA family; n=3; Campylobacter|... 39 0.19
UniRef50_Q8I233 Cluster: Replication factor c protein, putative;... 39 0.19
UniRef50_A7ANZ3 Cluster: Putative uncharacterized protein; n=1; ... 39 0.19
UniRef50_O69170 Cluster: DNA polymerase III subunit delta'; n=40... 39 0.19
UniRef50_P52024 Cluster: DNA polymerase III subunit delta'; n=19... 39 0.19
UniRef50_UPI00015B50FB Cluster: PREDICTED: similar to conserved ... 38 0.26
UniRef50_Q3AX74 Cluster: ATPase; n=42; root|Rep: ATPase - Synech... 38 0.26
UniRef50_A0WD18 Cluster: DNA polymerase III, delta prime subunit... 38 0.26
UniRef50_Q0W3P4 Cluster: Replication factor C large subunit; n=1... 38 0.26
UniRef50_Q5ZHX0 Cluster: Putative uncharacterized protein; n=5; ... 38 0.34
UniRef50_Q62JP0 Cluster: DNA polymerase III, delta prime subunit... 38 0.34
UniRef50_A0Q3M3 Cluster: DNA polymerase III, delta subunit, puta... 38 0.34
UniRef50_A0KKI0 Cluster: DNA polymerase III, delta' subunit; n=2... 38 0.34
UniRef50_Q3LVV8 Cluster: DNA replication factor C; n=1; Bigelowi... 38 0.34
UniRef50_A3WQJ1 Cluster: DNA polymerase III, delta prime subunit... 38 0.45
UniRef50_Q2QTM2 Cluster: Expressed protein; n=5; Oryza sativa|Re... 38 0.45
UniRef50_Q10NN1 Cluster: ATPase, AAA family protein, expressed; ... 38 0.45
UniRef50_A7R600 Cluster: Chromosome undetermined scaffold_1105, ... 38 0.45
UniRef50_Q8X080 Cluster: Related to replication factor C protein... 38 0.45
UniRef50_Q4FS45 Cluster: Possible DNA polymerase III, delta' sub... 37 0.59
UniRef50_A6FHN9 Cluster: HolB; n=1; Moritella sp. PE36|Rep: HolB... 37 0.59
UniRef50_Q8K9J2 Cluster: DNA polymerase III subunit delta'; n=2;... 37 0.59
UniRef50_UPI0000DB70D6 Cluster: PREDICTED: similar to Activator ... 37 0.79
UniRef50_Q6F0E2 Cluster: DNA polymerase III delta' subunit; n=1;... 37 0.79
UniRef50_Q49UZ3 Cluster: DNA polymerase III delta' subunit;... 37 0.79
>UniRef50_P40937 Cluster: Replication factor C subunit 5; n=51;
Eukaryota|Rep: Replication factor C subunit 5 - Homo
sapiens (Human)
Length = 340
Score = 349 bits (858), Expect = 6e-95
Identities = 164/261 (62%), Positives = 208/261 (79%)
Frame = -2
Query: 885 MYTPQQFSSMVLELNAXDDRGIGIVRGQILSFASTRTIFKAGPKLIILDEADAMTNDAQN 706
+Y ++F SMVLELNA DDRGI I+RG ILSFASTRTIFK G KL+ILDEADAMT DAQN
Sbjct: 77 LYKDKEFGSMVLELNASDDRGIDIIRGPILSFASTRTIFKKGFKLVILDEADAMTQDAQN 136
Query: 705 ALRRIIEKYTENVRFCIICNYLGKIIPALQSRCTRFRFAPLKQDQIVPRLQEIVTTEGVK 526
ALRR+IEK+TEN RFC+ICNYL KIIPALQSRCTRFRF PL + +VPRL+ +V E V
Sbjct: 137 ALRRVIEKFTENTRFCLICNYLSKIIPALQSRCTRFRFGPLTPELMVPRLEHVVEEEKVD 196
Query: 525 MSEGGMKALLTLSGGDMRKVLNTLQSTWLAYRDVTEDNVYTCVGHPLRADIDSILNWLLN 346
+SE GMKAL+TLS GDMR+ LN LQST +A+ VTE+ VYTC GHPL++DI +IL+W+LN
Sbjct: 197 ISEDGMKALVTLSSGDMRRALNILQSTNMAFGKVTEETVYTCTGHPLKSDIANILDWMLN 256
Query: 345 ENDFSACFKSIQDLKIAKGLALSDILAEVHTIIQRVKLPPEVLVSLLIKMSDAEARLASG 166
+ DF+ +++I +LK KGLAL DIL E+H + RV P V + LL KM+D E RL+ G
Sbjct: 257 Q-DFTTAYRNITELKTLKGLALHDILTEIHLFVHRVDFPSSVRIHLLTKMADIEYRLSVG 315
Query: 165 SSERVELAALIASFQIARDQV 103
++E+++L++LIA+FQ+ RD +
Sbjct: 316 TNEKIQLSSLIAAFQVTRDLI 336
>UniRef50_P34429 Cluster: Putative replication factor C subunit 5;
n=2; Caenorhabditis|Rep: Putative replication factor C
subunit 5 - Caenorhabditis elegans
Length = 368
Score = 261 bits (640), Expect = 1e-68
Identities = 130/263 (49%), Positives = 178/263 (67%), Gaps = 9/263 (3%)
Frame = -2
Query: 885 MYTPQQFSSMVLELNAXDDRGIGIVRGQILSFASTR------TIFKAGP---KLIILDEA 733
MY+P + +SMVLELNA D+RGI +VR I++FA T+ T G KL+ILDEA
Sbjct: 86 MYSPTKMASMVLELNASDERGIDVVRNTIVNFAQTKGLQAFSTSSNTGTVPFKLVILDEA 145
Query: 732 DAMTNDAQNALRRIIEKYTENVRFCIICNYLGKIIPALQSRCTRFRFAPLKQDQIVPRLQ 553
DAMT DAQNALRR+IEKYT+NVRFCIICNYL I+PA+QSRCTRFRFAPL Q IVPRL+
Sbjct: 146 DAMTKDAQNALRRVIEKYTDNVRFCIICNYLASIVPAIQSRCTRFRFAPLDQKLIVPRLE 205
Query: 552 EIVTTEGVKMSEGGMKALLTLSGGDMRKVLNTLQSTWLAYRDVTEDNVYTCVGHPLRADI 373
IV TE +KM+ G ALL +S GDMR V+NTLQST +++ V+E+ VY C+G P ++
Sbjct: 206 YIVETEQLKMTPDGKDALLIVSKGDMRTVINTLQSTAMSFDTVSENTVYQCIGQPTPKEM 265
Query: 372 DSILNWLLNENDFSACFKSIQDLKIAKGLALSDILAEVHTIIQRVKLPPEVLVSLLIKMS 193
++ LLN+ C +IQ G AL D++ +H + + +P E + +++ +
Sbjct: 266 KEVVKTLLNDPS-KKCMNTIQTKLFENGYALQDVITHLHDFVFTLDIPDEAMSAIITGLG 324
Query: 192 DAEARLASGSSERVELAALIASF 124
+ E L++G S +LAA++A+F
Sbjct: 325 EVEENLSTGCSNETQLAAVVAAF 347
>UniRef50_Q5K796 Cluster: DNA replication factor, putative; n=5;
Fungi/Metazoa group|Rep: DNA replication factor,
putative - Cryptococcus neoformans (Filobasidiella
neoformans)
Length = 373
Score = 251 bits (614), Expect = 2e-65
Identities = 122/257 (47%), Positives = 175/257 (68%)
Frame = -2
Query: 885 MYTPQQFSSMVLELNAXDDRGIGIVRGQILSFASTRTIFKAGPKLIILDEADAMTNDAQN 706
+Y P + +LELNA DDRGI +VR QI +FA T+ +F G KL+ILDEAD MT AQ+
Sbjct: 111 LYGPA-YRKHILELNASDDRGIDVVREQIKNFAMTKVLFSKGFKLVILDEADMMTQAAQS 169
Query: 705 ALRRIIEKYTENVRFCIICNYLGKIIPALQSRCTRFRFAPLKQDQIVPRLQEIVTTEGVK 526
ALRR+IE++T+NVRFCI+CNY+ KI PA+QSRCTRFRF+PL + +I ++ E+V EGV
Sbjct: 170 ALRRVIEQHTKNVRFCILCNYVNKITPAIQSRCTRFRFSPLPEKEIQVKVDEVVQKEGVN 229
Query: 525 MSEGGMKALLTLSGGDMRKVLNTLQSTWLAYRDVTEDNVYTCVGHPLRADIDSILNWLLN 346
+++ G A+L LS GDMR+ LN LQ+ AY V E VY C G+P DI+ ++ ++
Sbjct: 230 LTDDGRDAILKLSRGDMRRALNVLQACHAAYDIVDETAVYNCTGNPHPRDIERVVQSMM- 288
Query: 345 ENDFSACFKSIQDLKIAKGLALSDILAEVHTIIQRVKLPPEVLVSLLIKMSDAEARLASG 166
++F + I LKI KGLAL D++A + + V+LP + + LL + E RL+ G
Sbjct: 289 ADEFGTAYSLITSLKIEKGLALQDLIAGAYEFLDTVELPKQSRIYLLDHLGSTEHRLSLG 348
Query: 165 SSERVELAALIASFQIA 115
SE+++L AL+ +F++A
Sbjct: 349 GSEKMQLTALLGAFKVA 365
>UniRef50_A4IBL6 Cluster: Replication factor C, subunit 3, putative;
n=6; Trypanosomatidae|Rep: Replication factor C, subunit
3, putative - Leishmania infantum
Length = 364
Score = 241 bits (591), Expect = 1e-62
Identities = 122/277 (44%), Positives = 184/277 (66%), Gaps = 16/277 (5%)
Frame = -2
Query: 885 MYTPQQFSSMVLELNAXDDRGIGIVRGQILSFASTRTIFK------------AGP----K 754
+Y + + VLE+NA DDRGI +VR Q FAST +IF GP K
Sbjct: 74 LYGKDRVRANVLEMNASDDRGIDVVRQQTREFASTSSIFSMMGSGSSTGGGSGGPAAKFK 133
Query: 753 LIILDEADAMTNDAQNALRRIIEKYTENVRFCIICNYLGKIIPALQSRCTRFRFAPLKQD 574
L+ILDEAD M++DAQ ALRR+IEKYT NVRFCI+CN++ KIIPALQSRCTRFRFAP+K+
Sbjct: 134 LVILDEADQMSHDAQAALRRVIEKYTRNVRFCILCNHINKIIPALQSRCTRFRFAPVKKS 193
Query: 573 QIVPRLQEIVTTEGVKMSEGGMKALLTLSGGDMRKVLNTLQSTWLAYRDVTEDNVYTCVG 394
++PRL+ + EGVK + G+ A LS GD+R+ LNT+Q++ L+ +VTE++VY G
Sbjct: 194 AMMPRLRFVAEQEGVKYTTDGLAAAFRLSHGDLRRCLNTMQASALSANEVTEESVYRVTG 253
Query: 393 HPLRADIDSILNWLLNENDFSACFKSIQDLKIAKGLALSDILAEVHTIIQRVKLPPEVLV 214
+P AD+ +I++ +L+ +DF+ + +++ + KG++++D+ E+H ++ + LP +
Sbjct: 254 NPTPADVTAIVSDMLS-SDFATSWIKVEESVVQKGISIADLTREIHPVMMAMDLPQDCKC 312
Query: 213 SLLIKMSDAEARLASGSSERVELAALIASFQIARDQV 103
LL+K+SD E A G+ E L L+ +FQ+ ++ V
Sbjct: 313 FLLMKLSDLEYYAAGGARESAGLGGLLGAFQLVKEAV 349
>UniRef50_P38629 Cluster: Replication factor C subunit 3; n=15;
Dikarya|Rep: Replication factor C subunit 3 -
Saccharomyces cerevisiae (Baker's yeast)
Length = 340
Score = 231 bits (564), Expect = 2e-59
Identities = 119/257 (46%), Positives = 172/257 (66%), Gaps = 6/257 (2%)
Frame = -2
Query: 873 QQFSSMVLELNAXDDRGIGIVRGQILSFASTRTIFKAGPKLIILDEADAMTNDAQNALRR 694
+ +S+MVLELNA DDRGI +VR QI FASTR IF G KLIILDEADAMTN AQNALRR
Sbjct: 73 KNYSNMVLELNASDDRGIDVVRNQIKDFASTRQIFSKGFKLIILDEADAMTNAAQNALRR 132
Query: 693 IIEKYTENVRFCIICNYLGKIIPALQSRCTRFRFAPLKQDQIVPRLQEIVTTEGVKMSEG 514
+IE+YT+N RFC++ NY K+ PAL SRCTRFRF PL Q+ I R+ ++ E +K+S
Sbjct: 133 VIERYTKNTRFCVLANYAHKLTPALLSRCTRFRFQPLPQEAIERRIANVLVHEKLKLSPN 192
Query: 513 GMKALLTLSGGDMRKVLNTLQSTWLAY-----RDVTEDNVYTCVGHPLRADIDSILNWLL 349
KAL+ LS GDMR+VLN LQS ++++D +Y C G P +D+ ++L +L
Sbjct: 193 AEKALIELSNGDMRRVLNVLQSCKATLDNPDEDEISDDVIYECCGAPRPSDLKAVLKSIL 252
Query: 348 NENDFSACFKSIQDLKIAKGLALSDILAEVHTIIQRVKLP-PEVLVSLLIKMSDAEARLA 172
E+D+ ++ ++ AKGLAL D++ + I++ +L E V LL K++D E ++
Sbjct: 253 -EDDWGTAHYTLNKVRSAKGLALIDLIEGIVKILEDYELQNEETRVHLLTKLADIEYSIS 311
Query: 171 SGSSERVELAALIASFQ 121
G +++++ +A+I + +
Sbjct: 312 KGGNDQIQGSAVIGAIK 328
>UniRef50_A2DS36 Cluster: ATPase, AAA family protein; n=1;
Trichomonas vaginalis G3|Rep: ATPase, AAA family protein
- Trichomonas vaginalis G3
Length = 325
Score = 230 bits (563), Expect = 3e-59
Identities = 119/256 (46%), Positives = 170/256 (66%), Gaps = 1/256 (0%)
Frame = -2
Query: 864 SSMVLELNAXDDRGIGIVRGQILSFASTRTIFKAGPKLIILDEADAMTNDAQNALRRIIE 685
S VLELNA D+RGI VR +I FAS+R++F KLIILDE+DAMT AQ ALRRI+E
Sbjct: 70 SMSVLELNASDERGIDTVRMRIKDFASSRSLFGPKIKLIILDESDAMTGAAQAALRRIME 129
Query: 684 KYTENVRFCIICNYLGKIIPALQSRCTRFRFAPLKQDQIVPRLQEIVTTEGVKMSEGGMK 505
++T NVRF +ICNY K+IPAL+SRCT FRF PL + L+ I E + M EGG+K
Sbjct: 130 QFTSNVRFILICNYPEKLIPALRSRCTEFRFQPLPDEDAAKFLRHIADAEKLNMDEGGLK 189
Query: 504 ALLTLSGGDMRKVLNTLQSTWLA-YRDVTEDNVYTCVGHPLRADIDSILNWLLNENDFSA 328
ALL L GD+R+ +N +Q+T ++ +D+TE NVY C G+PL D+ L L+N+
Sbjct: 190 ALLKLGIGDLRRSINLMQTTSMSNTKDITEANVYRCSGYPLPEDMARTLEQLINK-PLDE 248
Query: 327 CFKSIQDLKIAKGLALSDILAEVHTIIQRVKLPPEVLVSLLIKMSDAEARLASGSSERVE 148
++ D GL+L D++ E+H+ + ++ PP VL +L+ +++ E LA GS ERV+
Sbjct: 249 ALNTLNDQVFNNGLSLLDVIRELHSQVVLMEFPPLVLANLIERLAQIERCLAEGSPERVQ 308
Query: 147 LAALIASFQIARDQVK 100
AA+ A+FQ+ R +++
Sbjct: 309 SAAIAAAFQMLRMEIE 324
>UniRef50_Q2UJ68 Cluster: Replication factor C; n=15;
Pezizomycotina|Rep: Replication factor C - Aspergillus
oryzae
Length = 398
Score = 208 bits (507), Expect = 2e-52
Identities = 121/280 (43%), Positives = 165/280 (58%), Gaps = 29/280 (10%)
Frame = -2
Query: 885 MYTPQQFSSMVLELNAXDDRGIGIVRGQILSFASTRTIFKAGP------------KLIIL 742
+Y + MVLELNA DDRGI +VR QI +FAST+ IF P KLIIL
Sbjct: 100 IYGSKNMRQMVLELNASDDRGIDVVREQIKTFASTKQIFSMAPQPTSGGSSLASYKLIIL 159
Query: 741 DEADAMTNDAQNALRRIIEKYTENVRFCIICNYLGKIIPALQSRCTRFRFAPLKQDQIVP 562
DEADAMT AQ ALRRI+EKYT N RFCII NY K+ PAL SRCTRFRF+PLK+ I
Sbjct: 160 DEADAMTATAQMALRRIMEKYTANTRFCIIANYTHKLSPALLSRCTRFRFSPLKEQDIRS 219
Query: 561 RLQEIVTTEGVKMSEGGMKALLTLSGGDMRKVLNTLQSTWL---------AYRD------ 427
+ ++ E VK+ + +L+ LS GDMR+ LN LQ+ A +D
Sbjct: 220 LVDLVIEKEEVKIQPEAVDSLVKLSKGDMRRALNVLQACHASSIPLPVKNAPKDQPRPEP 279
Query: 426 --VTEDNVYTCVGHPLRADIDSILNWLLNENDFSACFKSIQDLKIAKGLALSDILAEVHT 253
+T +Y C+ P ADI I+ LL +D ++C ++ LK KGLAL+DILA +
Sbjct: 280 ELITNGTIYDCIAAPHPADIQEIMTTLLATSDVTSCLSTVNTLKSNKGLALADILAALGE 339
Query: 252 IIQRVKLPPEVLVSLLIKMSDAEARLASGSSERVELAALI 133
+Q++++P + ++ L +++ E RLA G SE ++ L+
Sbjct: 340 QLQQLEVPAQTRITWLEGLAEIEFRLAGGGSEAIQTGGLV 379
>UniRef50_A7ATE5 Cluster: Replication factor C3 protein, putative;
n=1; Babesia bovis|Rep: Replication factor C3 protein,
putative - Babesia bovis
Length = 348
Score = 206 bits (502), Expect = 8e-52
Identities = 116/270 (42%), Positives = 167/270 (61%), Gaps = 16/270 (5%)
Frame = -2
Query: 861 SMVLELNAXDDRGIGIVRGQILSFASTRTIFKAG-------P----KLIILDEADAMTND 715
S V+ELNA D+RGI VR QI +FA T F +G P KLIILDEAD MTN
Sbjct: 71 SYVMELNASDERGIETVREQIKTFAETSNTFSSGIVGSDSGPRTNLKLIILDEADQMTNA 130
Query: 714 AQNALRRIIEKYTENVRFCIICNYLGKIIPALQSRCTRFRFAPLKQDQIVPRLQEIVTTE 535
AQN+LRRI+E Y+ NVRFC+ICN++ +IIP +QSRCT FRF PLK D + R +I E
Sbjct: 131 AQNSLRRIMEIYSSNVRFCLICNFMNRIIPPIQSRCTGFRFPPLKNDVVKRRTADIAKAE 190
Query: 534 GVKMSEGGMKALLTLSGGDMRKVLNTLQSTWL---AYRD--VTEDNVYTCVGHPLRADID 370
G+ +SE + L + GDMR+VLN LQ T + A RD +T D V + G P +I
Sbjct: 191 GLTVSECALDTLAEIGQGDMRRVLNCLQVTAMSIGATRDKVITSDVVISTAGLPNPTEIS 250
Query: 369 SILNWLLNENDFSACFKSIQDLKIAKGLALSDILAEVHTIIQRVKLPPEVLVSLLIKMSD 190
+L L+ E+ F C + L +G ++ D++ ++ I R+ P V+V LLI++ D
Sbjct: 251 KLLQRLMQES-FKDCVDYVVTLNQVQGYSVEDLVTALYRSILRIDWPNVVIVQLLIRLGD 309
Query: 189 AEARLASGSSERVELAALIASFQIARDQVK 100
E RL++G+S +++A+L+++F R +++
Sbjct: 310 IEQRLSAGASPYIQIASLVSAFAEVRLEIE 339
>UniRef50_Q01F45 Cluster: Rfc5 replication factor C subunit 5
(36kDa), probable; n=2; Ostreococcus|Rep: Rfc5
replication factor C subunit 5 (36kDa), probable -
Ostreococcus tauri
Length = 341
Score = 203 bits (495), Expect = 5e-51
Identities = 108/260 (41%), Positives = 160/260 (61%), Gaps = 1/260 (0%)
Frame = -2
Query: 864 SSMVLELNAXDDRGIGIVRGQILSFASTRTIFKAGPKLIILDEADAMTNDAQNALRRIIE 685
S+MVLELNA D RGI IVR +I SFAST F + KL+I+DE D++T DAQ ALRRI+E
Sbjct: 78 SNMVLELNASDSRGINIVRDEIQSFASTARPFSSAFKLVIMDECDSLTKDAQFALRRIME 137
Query: 684 KYTENVRFCIICNYLGKIIPALQSRCTRFRFAPLKQDQIVPRLQEIVTTEGVKMSEGGMK 505
KY ++ RFC+ICNY KIIPA+QSRCT+FRFAP+ + ++ RL+ +V +E V++S ++
Sbjct: 138 KYAQHTRFCLICNYASKIIPAIQSRCTKFRFAPVPAEAMLQRLRHVVCSERVQISGASLQ 197
Query: 504 ALLTLSGGDMRKVLNTLQSTWLAYRDVTEDNVYTCVGHPLRADIDSILNWLLNENDFSAC 325
+ L GDMR+ LN LQS LA +T ++ G R ++ L +L E +
Sbjct: 198 TIQRLGEGDMRRSLNVLQSLHLASTKITSATIHATTGLLDRCEVLEFLQ-VLFEKPMKSI 256
Query: 324 FKSIQDLKIAKGLALSDILAEVHTIIQRVKLPPEVLVSLLIKMSDAEARLASGSSERVEL 145
+ LK+ K AL+D++ E+ + + + +V LL ++D E L+ SSE+++
Sbjct: 257 LNHLYRLKLEKSFALTDLIKEMSETLFSLHMSVQVRSQLLKGLADVEHALSFTSSEKIQT 316
Query: 144 AALIASF-QIARDQVKLDTE 88
+LI+ F + R D E
Sbjct: 317 LSLISIFLHVRRTLTTSDNE 336
>UniRef50_Q9GR09 Cluster: Replication factor C3; n=9;
Aconoidasida|Rep: Replication factor C3 - Plasmodium
falciparum
Length = 344
Score = 202 bits (493), Expect = 9e-51
Identities = 108/268 (40%), Positives = 169/268 (63%), Gaps = 7/268 (2%)
Frame = -2
Query: 864 SSMVLELNAXDDRGIGIVRGQILSFASTR----TIFKAGPKLIILDEADAMTNDAQNALR 697
SS VLELNA DDRGI ++R QI +FA ++ T K KLIILDEAD MT AQNA+R
Sbjct: 76 SSFVLELNASDDRGINVIRDQIKTFAESKNHYTTCEKTTLKLIILDEADHMTYPAQNAMR 135
Query: 696 RIIEKYTENVRFCIICNYLGKIIPALQSRCTRFRFAPLKQDQIVPRLQEIVTTEGVKMSE 517
RI+E Y +NVRFC++CNY+ KI PA+QSRCT FRFAPLK++ + + +I +E V ++E
Sbjct: 136 RIMENYAKNVRFCLLCNYVNKITPAIQSRCTAFRFAPLKKEYMKNKALDIAKSENVNLTE 195
Query: 516 GGMKALLTLSGGDMRKVLNTLQSTWLAYRD--VTEDNVYTCVGHPLRADIDSILNWLLNE 343
GG+ +L+ + GDMR++LN LQ L++++ + E+ + + + PL ++ IL + +
Sbjct: 196 GGIDSLIRVGHGDMRRILNCLQVVSLSHKNLVIDENVILSTLDIPLPSETKKILEY-FTK 254
Query: 342 NDFSACFKSIQDLKIAKGLALSDILAEVHTIIQRVKLPPEVLVSLLIKMSDAEARLASGS 163
++ + +L+ KG + DI+ ++ + P LL + E R +SG+
Sbjct: 255 GSIKESYEFVSNLQYDKGYSTKDIMMCLYESVLTYDFPDSAFCLLLKNFGEIEERCSSGA 314
Query: 162 SERVELAALIASFQIARDQV-KLDTEVS 82
SE++ L+ALI++F R ++ KL ++S
Sbjct: 315 SEQITLSALISAFVEFRTELFKLKYDMS 342
>UniRef50_UPI000049A58F Cluster: activator 1 36 kda subunit; n=1;
Entamoeba histolytica HM-1:IMSS|Rep: activator 1 36 kda
subunit - Entamoeba histolytica HM-1:IMSS
Length = 325
Score = 199 bits (486), Expect = 7e-50
Identities = 106/255 (41%), Positives = 159/255 (62%), Gaps = 4/255 (1%)
Frame = -2
Query: 870 QFSSMVLELNAXDDRGIGIVRGQILSFASTRTIFKAGPKLIILDEADAMTNDAQNALRRI 691
+FS++VLELNA D+RGI +VR QI SFASTRT++ K IILDE+D +T DAQNALRR
Sbjct: 64 KFSALVLELNASDERGIDVVRDQIKSFASTRTLYTNCTKFIILDESDKLTKDAQNALRRT 123
Query: 690 IEKYTENVRFCIICNYLGKIIPALQSRCTRFRFAPLKQDQIVPRLQEIVTTEGVKMSEGG 511
+E+++ N RF ICN + I PA+QSRC + RF PL D + ++ I EG+++ E
Sbjct: 124 LEQFSANCRFIFICNEVHLITPAIQSRCAKMRFGPLSPDALTKIVENITMKEGMEIDEDA 183
Query: 510 MKALLTLSGGDMRKVLNTLQSTWLAYRDVTEDNVYTCVGHPLRADIDSILNWLLNENDFS 331
K+++ +S GD R ++NTLQ+ + + +T +YT VG P A ID I++ LL+ + +
Sbjct: 184 KKSIIEISKGDARSIINTLQALSMTCKQITNSTLYTMVGLPTPAQIDDIISELLS-SPYL 242
Query: 330 ACFKSIQDLKIAKGLALSDILAEVHTIIQRVK----LPPEVLVSLLIKMSDAEARLASGS 163
F + +L I GL+L+DI+ V + K L + L ++S E L+ G
Sbjct: 243 ESFTVVDNL-IKAGLSLNDIIIRVVPKLIEGKLISVLDKTARIQCLYQLSLIEQALSIGG 301
Query: 162 SERVELAALIASFQI 118
+ER + AA +A+FQ+
Sbjct: 302 NERTQTAAFVAAFQL 316
>UniRef50_A6R5J4 Cluster: Activator 1 subunit 3; n=1; Ajellomyces
capsulatus NAm1|Rep: Activator 1 subunit 3 - Ajellomyces
capsulatus NAm1
Length = 366
Score = 188 bits (459), Expect = 1e-46
Identities = 107/247 (43%), Positives = 150/247 (60%), Gaps = 1/247 (0%)
Frame = -2
Query: 885 MYTPQQFSSMVLELNAXDDRGIGIVRGQILSFASTRTIFKAGP-KLIILDEADAMTNDAQ 709
+Y + MVLELNA DDRGI + ++ + + G KLIILDEADAMT AQ
Sbjct: 127 IYGVKNMRQMVLELNASDDRGIDVFVIHPFRYSLSNSESTLGAFKLIILDEADAMTATAQ 186
Query: 708 NALRRIIEKYTENVRFCIICNYLGKIIPALQSRCTRFRFAPLKQDQIVPRLQEIVTTEGV 529
ALRRI+EKYT N RFCII NY K+ PAL SRCTRFRF+PLK++ I + ++V E V
Sbjct: 187 MALRRIMEKYTANTRFCIIANYTHKLSPALLSRCTRFRFSPLKEEDIRVLVDQVVEKERV 246
Query: 528 KMSEGGMKALLTLSGGDMRKVLNTLQSTWLAYRDVTEDNVYTCVGHPLRADIDSILNWLL 349
++ + +L+ LS GDMR+ LN LQ+ + HP +DI +I+ LL
Sbjct: 247 RIQPEAIDSLVQLSKGDMRRALNVLQA------------CHASTPHP--SDIKTIITTLL 292
Query: 348 NENDFSACFKSIQDLKIAKGLALSDILAEVHTIIQRVKLPPEVLVSLLIKMSDAEARLAS 169
+D ++C +I+ LK KGLAL+DIL + T +QR+++P + + ++D E RLA+
Sbjct: 293 TTSDVTSCLNTIKTLKSTKGLALADILTSISTELQRIEVPAATRIVWMEGLADIEWRLAA 352
Query: 168 GSSERVE 148
G E V+
Sbjct: 353 GGGEMVQ 359
>UniRef50_O57852 Cluster: Replication factor C small subunit (RFC
small subunit) (Clamp loader small subunit) [Contains:
Pho RFC intein]; n=8; Euryarchaeota|Rep: Replication
factor C small subunit (RFC small subunit) (Clamp loader
small subunit) [Contains: Pho RFC intein] - Pyrococcus
horikoshii
Length = 855
Score = 186 bits (454), Expect = 5e-46
Identities = 93/245 (37%), Positives = 150/245 (61%)
Frame = -2
Query: 852 LELNAXDDRGIGIVRGQILSFASTRTIFKAGPKLIILDEADAMTNDAQNALRRIIEKYTE 673
LELNA D+RGI ++R ++ FA T+ I A K+I LDEADA+T DAQ ALRR +E ++
Sbjct: 607 LELNASDERGINVIREKVKEFARTKPIGGASFKIIFLDEADALTQDAQQALRRTMEMFSS 666
Query: 672 NVRFCIICNYLGKIIPALQSRCTRFRFAPLKQDQIVPRLQEIVTTEGVKMSEGGMKALLT 493
NVRF + CNY KII +QSRC FRF PL+ + I RL+ I EG++++E G++A+L
Sbjct: 667 NVRFILSCNYSSKIIEPIQSRCAIFRFRPLRDEDIAKRLRYIAENEGLELTEEGLQAILY 726
Query: 492 LSGGDMRKVLNTLQSTWLAYRDVTEDNVYTCVGHPLRADIDSILNWLLNENDFSACFKSI 313
++ GDMR+ +N LQ+ + +T++NV+ DI ++ L N F + +
Sbjct: 727 IAEGDMRRAINILQAAAALDKKITDENVFMVASRARPEDIREMMLLALKGN-FLKAREKL 785
Query: 312 QDLKIAKGLALSDILAEVHTIIQRVKLPPEVLVSLLIKMSDAEARLASGSSERVELAALI 133
+++ + +GL+ D+L ++H + + + V L K+ + RL G++E ++L AL+
Sbjct: 786 REILLKQGLSGEDVLIQMHKEVFNLPIDEPTKVYLADKIGEYNFRLVEGANEMIQLEALL 845
Query: 132 ASFQI 118
A F +
Sbjct: 846 AQFTL 850
>UniRef50_Q5CUE4 Cluster: Replication factor RFC3 AAA+ ATpase; n=2;
Cryptosporidium|Rep: Replication factor RFC3 AAA+ ATpase
- Cryptosporidium parvum Iowa II
Length = 383
Score = 169 bits (410), Expect(2) = 2e-45
Identities = 94/241 (39%), Positives = 150/241 (62%), Gaps = 22/241 (9%)
Frame = -2
Query: 756 KLIILDEADAMTNDAQNALRRIIEKYTENVRFCIICNYLGKIIPALQSRCTRFRFAPLKQ 577
KLIILDEAD MT+ AQ ALRRI+E+Y+E+VRFCIICNY+ KI PALQSRCTRFRF+PL
Sbjct: 141 KLIILDEADMMTSTAQMALRRIMERYSEHVRFCIICNYVNKITPALQSRCTRFRFSPLPI 200
Query: 576 DQIVPRLQEIVTTEGVKMSEGGMKALLTLSGGDMRKVLNTLQSTWLA-------YRD--- 427
+ I R+ EI +E + ++ G ++L+ S GDMRKVLN LQS ++ ++D
Sbjct: 201 EDIRNRISEIALSERIFITREGQESLIKSSRGDMRKVLNVLQSCSMSNYGNIEKHKDSGE 260
Query: 426 ------------VTEDNVYTCVGHPLRADIDSILNWLLNENDFSACFKSIQDLKIAKGLA 283
+ E+ ++ +G P ++++D I +L+ FS+ F ++Q+ + G +
Sbjct: 261 LNGASIEGLITYINEEMIHRILGIPTKSELDYIFG-ILSRESFSSGFSALQNSQNENGYS 319
Query: 282 LSDILAEVHTIIQRVKLPPEVLVSLLIKMSDAEARLASGSSERVELAALIASFQIARDQV 103
D + +++ P EV+ L+ +++D E RL+ G+SE ++LAA+++ F R ++
Sbjct: 320 TQDFVNGLYSKSMEANWPDEVVPLLMRRLADIEYRLSRGASESIQLAAIVSCFHEVRMEM 379
Query: 102 K 100
+
Sbjct: 380 E 380
Score = 37.5 bits (83), Expect(2) = 2e-45
Identities = 17/26 (65%), Positives = 20/26 (76%)
Frame = -2
Query: 858 MVLELNAXDDRGIGIVRGQILSFAST 781
MVLELNA DDRGI +VR I SF+ +
Sbjct: 77 MVLELNASDDRGINVVRDAIKSFSES 102
>UniRef50_Q5UZE5 Cluster: Replication factor C small subunit; n=5;
Halobacteriaceae|Rep: Replication factor C small subunit
- Haloarcula marismortui (Halobacterium marismortui)
Length = 325
Score = 173 bits (422), Expect = 4e-42
Identities = 91/242 (37%), Positives = 149/242 (61%)
Frame = -2
Query: 852 LELNAXDDRGIGIVRGQILSFASTRTIFKAGPKLIILDEADAMTNDAQNALRRIIEKYTE 673
LELNA D+RGI +VR +I +FA T + ++I LDEADA+T+DAQ+ALRR +E+++
Sbjct: 81 LELNASDERGIDVVRDRIKNFART-SFGGVEYRIIFLDEADALTSDAQSALRRTMEQFSN 139
Query: 672 NVRFCIICNYLGKIIPALQSRCTRFRFAPLKQDQIVPRLQEIVTTEGVKMSEGGMKALLT 493
NVRF + CNY +II +QSRC FRF+PL D + ++ I E ++++E G+ AL+
Sbjct: 140 NVRFILSCNYSSQIIDPIQSRCAVFRFSPLADDAVAEEIRTIAAEEDIELTEDGLDALVY 199
Query: 492 LSGGDMRKVLNTLQSTWLAYRDVTEDNVYTCVGHPLRADIDSILNWLLNENDFSACFKSI 313
+ GDMRK +N LQ+ ++ V E VY +I +++ L + DF+A ++
Sbjct: 200 AADGDMRKAINGLQAASVSGDTVDESAVYAITSTARPEEIRTMVQSAL-DGDFTASRATL 258
Query: 312 QDLKIAKGLALSDILAEVHTIIQRVKLPPEVLVSLLIKMSDAEARLASGSSERVELAALI 133
L +G+A DI+ ++H I + + V +L ++ + + R+ G++ERV+L A++
Sbjct: 259 DRLLTEEGIAGGDIIDQLHRSIWEFDIDDDAAVRVLERIGETDYRITRGANERVQLEAML 318
Query: 132 AS 127
AS
Sbjct: 319 AS 320
>UniRef50_Q977Z9 Cluster: Replication factor C small subunit; n=4;
Thermoplasmatales|Rep: Replication factor C small
subunit - Thermoplasma volcanium
Length = 318
Score = 172 bits (419), Expect = 9e-42
Identities = 85/241 (35%), Positives = 145/241 (60%)
Frame = -2
Query: 852 LELNAXDDRGIGIVRGQILSFASTRTIFKAGPKLIILDEADAMTNDAQNALRRIIEKYTE 673
+E+NA ++ GI ++R +I A R G K++ LDEAD +T +AQ ALRR +E Y+E
Sbjct: 70 IEMNASNENGIDVIRNKIKDIARIRPSNPLGFKILFLDEADQLTAEAQAALRRTMEMYSE 129
Query: 672 NVRFCIICNYLGKIIPALQSRCTRFRFAPLKQDQIVPRLQEIVTTEGVKMSEGGMKALLT 493
RF CNY KIIP +QSR RF P++ + I +L EI EG + + M+A++
Sbjct: 130 TTRFVFACNYSSKIIPPIQSRTVVMRFRPVQDEFIKKKLNEIAKNEGFTIDDESMEAMVE 189
Query: 492 LSGGDMRKVLNTLQSTWLAYRDVTEDNVYTCVGHPLRADIDSILNWLLNENDFSACFKSI 313
+SGGDMRK +N LQ+ + + +++ +Y +G+ ++ +++ +N F + +
Sbjct: 190 VSGGDMRKAINVLQAVYTS-GEISPKKIYEIIGYASPESVNKLISRAIN-GLFDEARQIV 247
Query: 312 QDLKIAKGLALSDILAEVHTIIQRVKLPPEVLVSLLIKMSDAEARLASGSSERVELAALI 133
+ I GL+ DI+ VH+I++ +PP+ + ++ ++DAE R+ GS++R++L ALI
Sbjct: 248 DKMMIEDGLSGIDIVKSVHSIVRASVVPPKQKIEIIKALADAEFRIVEGSNDRIQLDALI 307
Query: 132 A 130
A
Sbjct: 308 A 308
>UniRef50_Q2NH89 Cluster: Replication factor C small subunit; n=2;
Methanobacteriaceae|Rep: Replication factor C small
subunit - Methanosphaera stadtmanae (strain DSM 3091)
Length = 321
Score = 171 bits (416), Expect = 2e-41
Identities = 93/251 (37%), Positives = 149/251 (59%), Gaps = 4/251 (1%)
Frame = -2
Query: 852 LELNAXDDRGIGIVRGQILSFASTRTIFKAGPKLIILDEADAMTNDAQNALRRIIEKYTE 673
LELNA D RGI VR +I SF + + A ++I LDE D MT DAQ ALRR +E YT+
Sbjct: 70 LELNASDARGIDTVRNEIKSFCKLKAV-GAPFRIIFLDEVDNMTKDAQQALRREMEMYTK 128
Query: 672 NVRFCIICNYLGKIIPALQSRCTRFRFAPLKQDQIVPRLQEIVTTEGVKMSEGGMKALLT 493
F + CNY KII +QSRC FRF+P+K I+ RL+ I + EG++ + ++ ++
Sbjct: 129 TSSFILSCNYSSKIIDPIQSRCAIFRFSPIKAANIIKRLKYIASEEGIEAEQSALENIVY 188
Query: 492 LSGGDMRKVLNTLQSTWLAYRDVTEDNVYTCVGHPLRADIDSILNWLLNENDFSACFKSI 313
+ GDMRK +N LQ++ VTE+ VY + D+ I+N LN +DF +
Sbjct: 189 FTQGDMRKSINILQASTTTENTVTEEAVYDVISRAKPKDVRKIINKALN-HDFMEARDLL 247
Query: 312 QDLKIAKGLALSDILAEVHTIIQRV---KLPPEV-LVSLLIKMSDAEARLASGSSERVEL 145
+D+ I +G++ D++ + + + ++ +L PEV + L+ MS+ + R+ GS+ R++L
Sbjct: 248 RDIMIIEGVSGDDLITQFYQEVAQMTQEELIPEVEFIKLMEYMSECDYRIREGSNPRLQL 307
Query: 144 AALIASFQIAR 112
AL++ F + +
Sbjct: 308 EALLSKFLLVK 318
>UniRef50_A0CAF3 Cluster: Chromosome undetermined scaffold_161,
whole genome shotgun sequence; n=2;
Oligohymenophorea|Rep: Chromosome undetermined
scaffold_161, whole genome shotgun sequence - Paramecium
tetraurelia
Length = 340
Score = 166 bits (404), Expect = 6e-40
Identities = 96/260 (36%), Positives = 153/260 (58%), Gaps = 11/260 (4%)
Frame = -2
Query: 870 QFSSMVLELNAXDDRGIGIVRGQILSFASTRTIF-----KAGPKLIILDEADAMTNDAQN 706
+++ MVLELNA D+RGI VR I FA +++ KL+ILDEADAMT AQ
Sbjct: 76 KYNQMVLELNASDERGINTVRETIKGFAESQSFTFTKDKNTSIKLVILDEADAMTAAAQF 135
Query: 705 ALRRIIEKYTENVRFCIICNYLGKIIPALQSRCTRFRFAPLKQDQIVPRLQEIVTTEGVK 526
ALRRIIEKY + RFC ICN++ +IIPA+QSRCTRF+F + D R++ I E +
Sbjct: 136 ALRRIIEKYAKTTRFCFICNHISQIIPAIQSRCTRFKFKQISLDVASSRIKYICENESIP 195
Query: 525 MSEGGMKALLTLSGGDMRKVLNTLQSTWLAYRD-----VTEDNVYTCVGHPLRADIDSIL 361
++E +K++ L GDMR+V+N LQS L+ + + VY G I I+
Sbjct: 196 LNEQAIKSVFELCSGDMRRVVNMLQSLSLSTSNSNLEVINSQYVYQFTGMAHPDLIKQIM 255
Query: 360 NWLLNENDFSACFKSIQDLKIAKGLALSDILAEVHTIIQRVK-LPPEVLVSLLIKMSDAE 184
+L+N+++ + I+ + +G++L +L E+ T + + L + +++ +M++ E
Sbjct: 256 EYLMNQSEIQKTYLKIKTILNEQGISLQLLLTELSTQLLGLNVLNDKQKCNVIERMAELE 315
Query: 183 ARLASGSSERVELAALIASF 124
RL+ +++V+L +LI F
Sbjct: 316 YRLSICCNDQVQLLSLIGIF 335
>UniRef50_Q9UXF5 Cluster: Replication factor C small subunit; n=18;
Thermoprotei|Rep: Replication factor C small subunit -
Sulfolobus solfataricus
Length = 330
Score = 165 bits (401), Expect = 1e-39
Identities = 91/252 (36%), Positives = 146/252 (57%), Gaps = 2/252 (0%)
Frame = -2
Query: 867 FSSMVLELNAXDDRGIGIVRGQILSFASTRTIFKAGPKLIILDEADAMTNDAQNALRRII 688
++ LELNA D+RGI ++R ++ FA T K+++LDEAD MT DAQ ALRR +
Sbjct: 70 YTEYFLELNASDERGIDVIRNKVKEFARTVIPGDIPFKVVLLDEADNMTADAQQALRRTM 129
Query: 687 EKYTENVRFCIICNYLGKIIPALQSRCTRFRFAPLKQDQIVPRLQEIVTTEGVKMSEGGM 508
E YTEN RF + CNYL KII +QSR FRF PLK++ +V RL I E + + +
Sbjct: 130 ELYTENTRFILACNYLSKIIEPIQSRTALFRFYPLKKEDVVNRLIYIAKNEKAEYDQKAL 189
Query: 507 KALLTLSGGDMRKVLNTLQSTWLAYRDVTEDNVYTCVGHPLRADIDSILNWLLNENDFSA 328
+ + ++ GDMRK +N LQ+ AY ++ + V+ +G ++ ++N L + F+
Sbjct: 190 ETIYDITMGDMRKSINILQAA-SAYGKISVEAVFKVLGLAQPKEVREMINLAL-QGKFTQ 247
Query: 327 CFKSIQDLKIAKGLALSDILAEVHTII--QRVKLPPEVLVSLLIKMSDAEARLASGSSER 154
++ L I GL+ DI+ ++H I +++ E+ V LL + + E R+ G+ +
Sbjct: 248 ARDKLRTLLITYGLSGEDIVKQIHREITSSEIQISEELRVLLLDYIGETEFRIIEGADDE 307
Query: 153 VELAALIASFQI 118
++L+AL+A I
Sbjct: 308 IQLSALLAKMAI 319
>UniRef50_Q8PVY4 Cluster: Replication factor C small subunit; n=13;
cellular organisms|Rep: Replication factor C small
subunit - Methanosarcina mazei (Methanosarcina frisia)
Length = 338
Score = 165 bits (401), Expect = 1e-39
Identities = 91/258 (35%), Positives = 151/258 (58%), Gaps = 10/258 (3%)
Frame = -2
Query: 849 ELNAXDDRGIGIVRGQILSFASTRTIFKAGPKLIILDEADAMTNDAQNALRRIIEKYTEN 670
ELNA D+RGI IVR +I +FA T + A K+I LDEADA+T+DAQ+ALRR +EK++ N
Sbjct: 82 ELNASDERGIDIVRNKIKNFAKTAPMGGAPFKIIFLDEADALTSDAQSALRRTMEKFSSN 141
Query: 669 VRFCIICNYLGKIIPALQSRCTRFRFAPLKQDQIVPRLQEIVTTEGVKMSEGGMKALLTL 490
RF + CNY KII +QSRC +RF L I RL+ I + + +++GG +AL+ +
Sbjct: 142 CRFILSCNYSSKIIEPIQSRCAVYRFRRLSDKAIRERLEYIAKEQDLSITDGGYEALIYV 201
Query: 489 SGGDMRKVLNTLQSTWL--AYRDVTEDNVYTCVGHPLRADIDSILNWLLNENDFSACFKS 316
+ GDMRK +N+LQ+ + ++ + +Y +I +++ L N F K
Sbjct: 202 AQGDMRKAVNSLQAAAFIDVEKPISRETIYRTTATANPEEIKNLIETALRGN-FRVARKE 260
Query: 315 IQDLKIAKGLALSDILAEVHTIIQRVK--------LPPEVLVSLLIKMSDAEARLASGSS 160
+ L +GL+ DI+ +++ ++ + L +V L+ + + + RL G+S
Sbjct: 261 LNRLLYEEGLSGEDIVGQIYRVVSEMDNLMILDLGLSERDIVGLVDIIGETDFRLTEGAS 320
Query: 159 ERVELAALIASFQIARDQ 106
E+++L AL+A F ++R++
Sbjct: 321 EKIQLEALLAHFALSREE 338
>UniRef50_Q8TZC4 Cluster: Replication factor C small subunit (RFC
small subunit) (Clamp loader small subunit) [Contains:
Mkn RFC intein]; n=1; Methanopyrus kandleri|Rep:
Replication factor C small subunit (RFC small subunit)
(Clamp loader small subunit) [Contains: Mkn RFC intein] -
Methanopyrus kandleri
Length = 635
Score = 162 bits (394), Expect = 9e-39
Identities = 86/240 (35%), Positives = 141/240 (58%), Gaps = 1/240 (0%)
Frame = -2
Query: 846 LNAXDDRGIGIVRGQILSFASTRTIFKAGPKLIILDEADAMTNDAQNALRRIIEKYTENV 667
L+ D+RGI ++R ++ +FA TR + A K+I LDEAD +T D+Q ALRRI+E Y++
Sbjct: 385 LHNSDERGIDVIRTKVKNFARTRPMGGARFKIIFLDEADNLTRDSQQALRRIMEMYSDAC 444
Query: 666 RFCIICNYLGKIIPALQSRCTRFRFAPLKQDQIVPRLQEIVTTEGVKMSEGGMKALLTLS 487
RF + NY II +QSRC F+F L + I RL++I +EGV+++E + A++ +S
Sbjct: 445 RFILAANYSSAIIDPIQSRCVVFKFTKLPESAIKERLRKIAESEGVEITEDALDAIVYVS 504
Query: 486 GGDMRKVLNTLQSTWLAYRDVTEDNVYTCVGHPLRADIDSILNWLLNENDFSACFKSIQD 307
GDMR+ +N LQ+ R++ ED V+ ++ +++ N DF + + +
Sbjct: 505 EGDMRRAINVLQAAAALGREIDEDTVFQIAATARPEEVREMIHHAWN-GDFERARELLHE 563
Query: 306 LKIAKGLALSDILAEVH-TIIQRVKLPPEVLVSLLIKMSDAEARLASGSSERVELAALIA 130
L G++ D++ +VH I ++P E + L+ + D E RL GS ER++L AL+A
Sbjct: 564 LLTRYGMSGEDVVRQVHREIFDMDEIPEEAIPELVNAVGDFEYRLIRGSDERIQLEALLA 623
>UniRef50_A7DR59 Cluster: Replication factor C; n=1; Candidatus
Nitrosopumilus maritimus SCM1|Rep: Replication factor C
- Candidatus Nitrosopumilus maritimus SCM1
Length = 316
Score = 155 bits (377), Expect = 1e-36
Identities = 89/241 (36%), Positives = 143/241 (59%)
Frame = -2
Query: 852 LELNAXDDRGIGIVRGQILSFASTRTIFKAGPKLIILDEADAMTNDAQNALRRIIEKYTE 673
LELNA D+RGIG+VR ++ F+ + K+IILDEAD MT+DAQ ALRRIIE +
Sbjct: 73 LELNASDERGIGMVREKVKKFSRYAGMADVPFKIIILDEADEMTSDAQTALRRIIEDTAK 132
Query: 672 NVRFCIICNYLGKIIPALQSRCTRFRFAPLKQDQIVPRLQEIVTTEGVKMSEGGMKALLT 493
RF +I N + KII +QSRC F+F + ++ ++ RL+EI E VK + G+KA+
Sbjct: 133 ICRFILIANNISKIIDPIQSRCATFKFTAVPEEDVIKRLEEIAKKEKVKADKKGLKAIYD 192
Query: 492 LSGGDMRKVLNTLQSTWLAYRDVTEDNVYTCVGHPLRADIDSILNWLLNENDFSACFKSI 313
S GD+R +N +Q+T + ++EDNV G D+D +L L+ A K I
Sbjct: 193 YSEGDLRHAINLMQAT-ASLGSISEDNVKASAGLTKTTDVDEVLKIALSGKVPEAREKMI 251
Query: 312 QDLKIAKGLALSDILAEVHTIIQRVKLPPEVLVSLLIKMSDAEARLASGSSERVELAALI 133
+ +K+ G++ SD L +++ + + K + L +L ++ + R+ GS+ ++L+A++
Sbjct: 252 ELIKV-YGMSESDFLKYLNSAVFKSK--HDKLSDILEIIAKYDYRILVGSNSEIQLSAML 308
Query: 132 A 130
A
Sbjct: 309 A 309
>UniRef50_Q8SSI2 Cluster: DNA REPLICATION FACTOR C (ACTIVATOR 1)
SUBUNIT; n=1; Encephalitozoon cuniculi|Rep: DNA
REPLICATION FACTOR C (ACTIVATOR 1) SUBUNIT -
Encephalitozoon cuniculi
Length = 305
Score = 155 bits (375), Expect = 2e-36
Identities = 95/248 (38%), Positives = 140/248 (56%)
Frame = -2
Query: 855 VLELNAXDDRGIGIVRGQILSFASTRTIFKAGPKLIILDEADAMTNDAQNALRRIIEKYT 676
VLELNA D+RGI VR I FAST + KL+ILDEAD M+ DAQNALRRIIE ++
Sbjct: 65 VLELNASDERGIATVRETIKEFAST---YSKTMKLVILDEADMMSRDAQNALRRIIEDFS 121
Query: 675 ENVRFCIICNYLGKIIPALQSRCTRFRFAPLKQDQIVPRLQEIVTTEGVKMSEGGMKALL 496
N RFC+I N+L KII + SRCT+FRF P+ + R++EI E +K + G+KA+
Sbjct: 122 ANTRFCLIANHLRKIISPILSRCTKFRFGPIGDTE--NRIEEICKRESIKYTPEGIKAVS 179
Query: 495 TLSGGDMRKVLNTLQSTWLAYRDVTEDNVYTCVGHPLRADIDSILNWLLNENDFSACFKS 316
+S GDMRK +N +Q + V E NV G + + + L
Sbjct: 180 RISMGDMRKAVNDIQGISASLGQVDESNVRRFNGIAPSSVYEELFR-NLGSMGMPELRVE 238
Query: 315 IQDLKIAKGLALSDILAEVHTIIQRVKLPPEVLVSLLIKMSDAEARLASGSSERVELAAL 136
++ L+ + +L + +++ K+ + + +L +MSD E R + G SE+V+L A+
Sbjct: 239 LERLRYEYSMDCDALLGNLGELVRESKMRNK--MKILKEMSDIEYRKSIGCSEKVQLDAI 296
Query: 135 IASFQIAR 112
I+ F + R
Sbjct: 297 ISIFILNR 304
>UniRef50_P35249 Cluster: Replication factor C subunit 4; n=34;
Eukaryota|Rep: Replication factor C subunit 4 - Homo
sapiens (Human)
Length = 363
Score = 150 bits (364), Expect = 4e-35
Identities = 92/262 (35%), Positives = 148/262 (56%), Gaps = 9/262 (3%)
Frame = -2
Query: 885 MYTPQQFSSMVLELNAXDDRGIGIVRGQILSFAS-----TRTIFKAGP--KLIILDEADA 727
++ P+ F VLELNA D+RGI +VR ++ +FA +R+ K P K++ILDEAD+
Sbjct: 95 LFGPELFRLRVLELNASDERGIQVVREKVKNFAQLTVSGSRSDGKPCPPFKIVILDEADS 154
Query: 726 MTNDAQNALRRIIEKYTENVRFCIICNYLGKIIPALQSRCTRFRFAPLKQDQIVPRLQEI 547
MT+ AQ ALRR +EK ++ RFC+ICNY+ +II L SRC++FRF PL RL +I
Sbjct: 155 MTSAAQAALRRTMEKESKTTRFCLICNYVSRIIEPLTSRCSKFRFKPLSDKIQQQRLLDI 214
Query: 546 VTTEGVKMSEGGMKALLTLSGGDMRKVLNTLQST--WLAYRDVTEDNVYTCVGHPLRADI 373
E VK+S+ G+ L+ +S GD+RK + LQS +++TE + G I
Sbjct: 215 AKKENVKISDEGIAYLVKVSEGDLRKAITFLQSATRLTGGKEITEKVITDIAGVIPAEKI 274
Query: 372 DSILNWLLNENDFSACFKSIQDLKIAKGLALSDILAEVHTIIQRVKLPPEVLVSLLIKMS 193
D + F ++DL I +G A + ++ ++H ++ L + + K++
Sbjct: 275 DGVFA-ACQSGSFDKLEAVVKDL-IDEGHAATQLVNQLHDVVVENNLSDKQKSIITEKLA 332
Query: 192 DAEARLASGSSERVELAALIAS 127
+ + LA G+ E ++L +L A+
Sbjct: 333 EVDKCLADGADEHLQLISLCAT 354
>UniRef50_Q8WSL8 Cluster: Replication factor C subunit 4; n=6;
Plasmodium|Rep: Replication factor C subunit 4 -
Plasmodium falciparum
Length = 336
Score = 150 bits (363), Expect = 5e-35
Identities = 90/254 (35%), Positives = 137/254 (53%), Gaps = 2/254 (0%)
Frame = -2
Query: 870 QFSSMVLELNAXDDRGIGIVRGQILSFASTRTIFKAGP-KLIILDEADAMTNDAQNALRR 694
Q VLELNA DDRGI ++R +I SFA G K+IILDE D+MT AQ +LRR
Sbjct: 77 QAKKAVLELNASDDRGINVIRDRIKSFAKEIISLPPGKHKIIILDEVDSMTTAAQQSLRR 136
Query: 693 IIEKYTENVRFCIICNYLGKIIPALQSRCTRFRFAPLKQDQIVPRLQEIVTTEGVKMSEG 514
I+E Y++ RF + CN KII ALQSRC R+ L DQ++ R+ +I E +K ++
Sbjct: 137 IMELYSDTTRFALACNQSEKIIDALQSRCAIIRYFKLSDDQVLKRILKICDLENIKYTDD 196
Query: 513 GMKALLTLSGGDMRKVLNTLQSTWLAYRDVTEDNVYTCVGHPLRADIDSILNWLLNENDF 334
G+ AL ++ GD+RK +N LQST+ + ++NV P I+++L +N
Sbjct: 197 GLDALTFIADGDLRKAVNCLQSTYAGLEVINKENVLHICDIPSPERIENLLKHCVNSEWK 256
Query: 333 SACFKSIQDLKIAKGLALSDILAEVHTIIQRVKLPPEVLVSLLIKMSDAEAR-LASGSSE 157
A I I +G DI +++R + EV+ +K+ +A+G +
Sbjct: 257 KA--HDIAYSMIKEGHTPYDISLTSSNVLRRFNIGSEVIQIEFLKIGAMACNTMATGLTS 314
Query: 156 RVELAALIASFQIA 115
++L L+A + +A
Sbjct: 315 VIQLDKLLADWCMA 328
>UniRef50_P35250 Cluster: Replication factor C subunit 2; n=103;
Eukaryota|Rep: Replication factor C subunit 2 - Homo
sapiens (Human)
Length = 354
Score = 146 bits (353), Expect = 9e-34
Identities = 80/243 (32%), Positives = 136/243 (55%), Gaps = 1/243 (0%)
Frame = -2
Query: 855 VLELNAXDDRGIGIVRGQILSFASTR-TIFKAGPKLIILDEADAMTNDAQNALRRIIEKY 679
+LELNA +DRGI +VR +I FA + T+ K K+IILDEAD+MT+ AQ ALRR +E Y
Sbjct: 102 MLELNASNDRGIDVVRNKIKMFAQQKVTLPKGRHKIIILDEADSMTDGAQQALRRTMEIY 161
Query: 678 TENVRFCIICNYLGKIIPALQSRCTRFRFAPLKQDQIVPRLQEIVTTEGVKMSEGGMKAL 499
++ RF + CN KII +QSRC R+ L QI+ RL ++ E V ++ G++A+
Sbjct: 162 SKTTRFALACNASDKIIEPIQSRCAVLRYTKLTDAQILTRLMNVIEKERVPYTDDGLEAI 221
Query: 498 LTLSGGDMRKVLNTLQSTWLAYRDVTEDNVYTCVGHPLRADIDSILNWLLNENDFSACFK 319
+ + GDMR+ LN LQST+ + + +NV+ P + ++ +N N +K
Sbjct: 222 IFTAQGDMRQALNNLQSTFSGFGFINSENVFKVCDEPHPLLVKEMIQHCVNAN-IDEAYK 280
Query: 318 SIQDLKIAKGLALSDILAEVHTIIQRVKLPPEVLVSLLIKMSDAEARLASGSSERVELAA 139
+ L G + DI+ + + + ++ + + + ++ ++A G + +++A
Sbjct: 281 ILAHL-WHLGYSPEDIIGNIFRVCKTFQMAEYLKLEFIKEIGYTHMKIAEGVNSLLQMAG 339
Query: 138 LIA 130
L+A
Sbjct: 340 LLA 342
>UniRef50_A2E6V9 Cluster: ATPase, AAA family protein; n=2;
Trichomonas vaginalis G3|Rep: ATPase, AAA family protein
- Trichomonas vaginalis G3
Length = 325
Score = 145 bits (352), Expect = 1e-33
Identities = 91/258 (35%), Positives = 144/258 (55%), Gaps = 6/258 (2%)
Frame = -2
Query: 867 FSSMVLELNAXDDRGIGIVRGQILSFASTRTIFKAGP-KLIILDEADAMTNDAQNALRRI 691
F V ELNA D+RGI VR I FAS P K++ILDEAD+MT+ AQNALRRI
Sbjct: 70 FRLRVKELNASDERGIDAVRSSIKEFASLAVPNGKIPFKIVILDEADSMTSAAQNALRRI 129
Query: 690 IEKYTENVRFCIICNYLGKIIPALQSRCTRFRFAPLKQDQIVPRLQEIVTTEGVKM-SEG 514
IE Y+ RF IICNY+ KII + SRC +FRF PL + I+ RL +I + + + SE
Sbjct: 130 IETYSSVTRFIIICNYVSKIIDPILSRCAKFRFKPLDRPAIIERLHKIFEDQNLSVDSED 189
Query: 513 GMKALLTLSGGDMRKVLNTLQ---STWLAYRDVTEDNVYTCVGHPLRADIDSILNWLLNE 343
+ L+ +SGGD+RK + Q ST R +T + + + G P AD+++ L+
Sbjct: 190 TYETLVNISGGDLRKAITFAQSAASTCSLTRKITSEIITSISGAPNPADVENYFKTCLSA 249
Query: 342 NDFSACFKSIQDLKIAKGLALSDIL-AEVHTIIQRVKLPPEVLVSLLIKMSDAEARLASG 166
D+ + DL A G + I ++ I++ ++P L++K++ A+ + +
Sbjct: 250 -DWDTIENATIDLVYA-GYDIGQIFEILINLIVKTNEIPEAKKPELILKIAQADGAIINR 307
Query: 165 SSERVELAALIASFQIAR 112
+ + +L ++ +S + ++
Sbjct: 308 ADPQFQLISISSSIRASK 325
>UniRef50_Q4Q732 Cluster: Replication factor C, subunit 2, putative;
n=6; Trypanosomatidae|Rep: Replication factor C, subunit
2, putative - Leishmania major
Length = 354
Score = 140 bits (339), Expect = 4e-32
Identities = 87/263 (33%), Positives = 139/263 (52%), Gaps = 16/263 (6%)
Frame = -2
Query: 885 MYTPQQFSSMVLELNAXDDRGIGIVRGQILSFAS----------TRTIFKAGP----KLI 748
++ P S V ELNA DDRGI +VR ++ FA T++ K P KLI
Sbjct: 83 LFGPDYIRSRVRELNASDDRGISVVREKVKIFAQGAVSSSGSSVTQSDGKVYPVPPFKLI 142
Query: 747 ILDEADAMTNDAQNALRRIIEKYTENVRFCIICNYLGKIIPALQSRCTRFRFAPLKQDQI 568
ILDEADA+ DAQ ALRR++E +++ RFCI+CNY+ +II + SRC ++RF PL + +
Sbjct: 143 ILDEADALLPDAQAALRRMMEDFSDVTRFCILCNYVSRIIDPIASRCAKYRFKPLVKSAL 202
Query: 567 VPRLQEIVTTEGVKMSEGGMKALLTLSGGDMRKVLNTLQSTWLAYRDVTEDNVYTCVGHP 388
R++ + EG+ +S + AL T+SGGD+R + LQS A D + V
Sbjct: 203 YHRIEYVAQAEGITLSPASLHALDTVSGGDLRLAIMHLQSAQKAKGDDLSKEDFVSVSGS 262
Query: 387 LRADIDSILNWLLNENDFSACFKSIQDLKIAKGLALSDILAEVHTIIQRVKLPPEVLV-- 214
+ AD+ L + ++ + L +A+G A + +L ++ + + P
Sbjct: 263 VPADVMQQYLSALFSHRLEEVIQASRRL-VAEGFAAAQVLLQMQHYLVSAECPLNSAQRG 321
Query: 213 SLLIKMSDAEARLASGSSERVEL 145
+++K+ E RLA G + ++L
Sbjct: 322 KIMLKLCQTERRLADGGDDYLQL 344
>UniRef50_Q245Y3 Cluster: ATPase, AAA family protein; n=2;
Oligohymenophorea|Rep: ATPase, AAA family protein -
Tetrahymena thermophila SB210
Length = 373
Score = 140 bits (338), Expect = 6e-32
Identities = 91/262 (34%), Positives = 143/262 (54%), Gaps = 9/262 (3%)
Frame = -2
Query: 885 MYTPQQFSSMVLELNAXDDRGIGIVRGQILSFA------STRTIFKAGP-KLIILDEADA 727
+Y P + +LELNA DDRGI IVR +I FA + FK K+IILDEAD+
Sbjct: 99 LYGPTFYKERILELNASDDRGIQIVRDKIKKFAQQVVSKNPDKSFKCPNFKIIILDEADS 158
Query: 726 MTNDAQNALRRIIEKYTENVRFCIICNYLGKIIPALQSRCTRFRFAPLKQDQIVPRLQEI 547
MT +AQ+ALRRIIE + RFCIICNY+ KII L SRC +FRF P+ + + +L+EI
Sbjct: 159 MTTEAQSALRRIIEDTSSTTRFCIICNYITKIIEPLGSRCVKFRFKPIPLEAQITKLEEI 218
Query: 546 VTTEGVKMSEGGMKALLTLSGGDMRKVLNTLQSTWLAY-RDVTEDNVYTCVGHPLRADID 370
TE ++ + ++ L+ +S GD+RK +N LQS Y +D+ + + G I+
Sbjct: 219 CKTEDIEYEKEALEKLIKISNGDLRKSVNLLQSASTLYEKDIKVEVIEEISGVNYLLCIN 278
Query: 369 SILNWLLNENDFSACFKSIQDLKIAKGLALSDILAEVHTIIQRVKLPPEV-LVSLLIKMS 193
+ L+ + DF + ++ + +G + +L + I K EV +L K++
Sbjct: 279 KLYKLLIGK-DFDKLKEGVKQF-LYQGYSPDQLLYQFSEYIISSKDFNEVKKARILEKIA 336
Query: 192 DAEARLASGSSERVELAALIAS 127
A+ L + +++ + +S
Sbjct: 337 LADKGLNERADSELQILNMFSS 358
>UniRef50_A0EG83 Cluster: Chromosome undetermined scaffold_95, whole
genome shotgun sequence; n=2; Oligohymenophorea|Rep:
Chromosome undetermined scaffold_95, whole genome
shotgun sequence - Paramecium tetraurelia
Length = 384
Score = 139 bits (336), Expect = 1e-31
Identities = 85/234 (36%), Positives = 129/234 (55%), Gaps = 1/234 (0%)
Frame = -2
Query: 855 VLELNAXDDRGIGIVRGQILSFASTRTIFKAGP-KLIILDEADAMTNDAQNALRRIIEKY 679
VLELNA DDRGI VR QI FA + + G K++ILDEAD++T AQ ALR II Y
Sbjct: 71 VLELNASDDRGIETVREQIKGFAQKKVNLQEGQHKIVILDEADSLTEGAQQALRMIISDY 130
Query: 678 TENVRFCIICNYLGKIIPALQSRCTRFRFAPLKQDQIVPRLQEIVTTEGVKMSEGGMKAL 499
+ + RF + CN K+I A+QSRC RF L + +I RL EI++ E V ++ G+ AL
Sbjct: 131 STSTRFVLSCNDSTKLIDAIQSRCCILRFNRLGEKEIRDRLLEIISQESVTYTKDGLDAL 190
Query: 498 LTLSGGDMRKVLNTLQSTWLAYRDVTEDNVYTCVGHPLRADIDSILNWLLNENDFSACFK 319
+ GDMR+ +N LQ+T+ + V +NV+ P D+ IL+ +L + +F +
Sbjct: 191 TFTAEGDMRQAINNLQATFTGFGLVNRENVFKVCDVPNVDDLKKILDHML-KGEFQPA-Q 248
Query: 318 SIQDLKIAKGLALSDILAEVHTIIQRVKLPPEVLVSLLIKMSDAEARLASGSSE 157
S+ G DI + +IQ ++ L +++ +AR+ G ++
Sbjct: 249 SLMKSIFDNGYMAYDITNTFNKVIQNHNGDRDLQFEFLRQIAFLKARILEGIAD 302
>UniRef50_A0RYC0 Cluster: Replication factor C small subunit; n=1;
Cenarchaeum symbiosum|Rep: Replication factor C small
subunit - Cenarchaeum symbiosum
Length = 311
Score = 138 bits (335), Expect = 1e-31
Identities = 83/243 (34%), Positives = 138/243 (56%), Gaps = 1/243 (0%)
Frame = -2
Query: 855 VLELNAXDDRGIGIVRGQILSFASTRTIFKAGPKLIILDEADAMTNDAQNALRRIIEKYT 676
+LELNA D+RGIG+VR ++ F++ + K+IILDEAD MT DAQ ALRR IE +
Sbjct: 67 LLELNASDERGIGMVRDKVKRFSNFAAFEEIPFKIIILDEADEMTADAQTALRRTIEDAS 126
Query: 675 ENVRFCIICNYLGKIIPALQSRCTRFRFAPLKQDQIVPRLQEIVTTEGVKMSEGGMKALL 496
+ RF I+ N + KII +QSRC ++F + + + + +L++I E + E G+K +
Sbjct: 127 KICRFIIVANNISKIIDPIQSRCAVYKFTSIPEKEAMAQLKKIAKGEKASIDEEGLKEVY 186
Query: 495 TLSGGDMRKVLNTLQSTWLAYRDVTEDNVYTCVGHPLRADIDSILNWLLNENDFSACFKS 316
S GD+R +N LQ+ + VT ++V T G + D+D IL L D S +
Sbjct: 187 EQSEGDLRHAINILQAA-ASSGAVTAESVRTSAGQARKGDVDGILKRAL-AGDLSGARER 244
Query: 315 IQDLKIAKGLALSDILAEVHTIIQRVKL-PPEVLVSLLIKMSDAEARLASGSSERVELAA 139
+ +L G++ SD L V + R P ++ ++ ++ + R+ SG++ ++L+A
Sbjct: 245 MVELIKVYGMSESDFLKYVSAAVFRSGAGDPGAILRII---AEYDYRILSGANPEIQLSA 301
Query: 138 LIA 130
++A
Sbjct: 302 MLA 304
>UniRef50_A7SA25 Cluster: Predicted protein; n=2; Nematostella
vectensis|Rep: Predicted protein - Nematostella
vectensis
Length = 401
Score = 137 bits (332), Expect = 3e-31
Identities = 84/225 (37%), Positives = 123/225 (54%), Gaps = 1/225 (0%)
Frame = -2
Query: 855 VLELNAXDDRGIGIVRGQILSFASTR-TIFKAGPKLIILDEADAMTNDAQNALRRIIEKY 679
VLELNA +DRGI +VR +I FA + T+ K K+IILDEAD+MT+ AQ ALRR +E Y
Sbjct: 119 VLELNASNDRGIDVVRNKIKMFAQQKVTLPKGRHKIIILDEADSMTDGAQQALRRTMEIY 178
Query: 678 TENVRFCIICNYLGKIIPALQSRCTRFRFAPLKQDQIVPRLQEIVTTEGVKMSEGGMKAL 499
++ RF + CN KII A+QSRC R+ L Q++ RL EI E V + G++A+
Sbjct: 179 SKTTRFALACNTSDKIIEAIQSRCAILRYTRLTDAQVLTRLLEICDKEQVPKVDDGLEAI 238
Query: 498 LTLSGGDMRKVLNTLQSTWLAYRDVTEDNVYTCVGHPLRADIDSILNWLLNENDFSACFK 319
+ + GDMR+ +N LQST+ + V +NV+ P I +L + D +K
Sbjct: 239 IFTAEGDMRQAINNLQSTYYGFGMVNSENVFKVCDEPHPLLIKEMLK-SCSVGDIDEAYK 297
Query: 318 SIQDLKIAKGLALSDILAEVHTIIQRVKLPPEVLVSLLIKMSDAE 184
+ L G + DI+ + + + + E L IK+ E
Sbjct: 298 VLSHL-WNMGYSPEDIITNIFRVCKTAPI-AEFLKLEFIKVQKDE 340
>UniRef50_Q5UP47 Cluster: Putative replication factor C small
subunit L499; n=1; Acanthamoeba polyphaga mimivirus|Rep:
Putative replication factor C small subunit L499 -
Mimivirus
Length = 344
Score = 137 bits (332), Expect = 3e-31
Identities = 86/237 (36%), Positives = 132/237 (55%), Gaps = 12/237 (5%)
Frame = -2
Query: 858 MVLELNAXDDRGIGIVRGQILSFASTRT-IF-KAGP----KLIILDEADAMTNDAQNALR 697
M+LELNA ++RGI VR +I +F S+++ IF G KL+ILDE D+MT +AQ LR
Sbjct: 82 MILELNASNERGIETVRTKIKNFVSSKSSIFLPMGVRDIFKLVILDEIDSMTVEAQGMLR 141
Query: 696 RIIEKYTENVRFCIICNYLGKIIPALQSRCTRFRFAPLKQDQIVPRLQEIVTTEGVKMSE 517
+ IEK + RFC+ICN + KI ALQSRC FRF+PL + + RL +I EGVK +
Sbjct: 142 QTIEKNSGTTRFCLICNDIDKINIALQSRCASFRFSPLNELDMHGRLSDICRLEGVKYEK 201
Query: 516 GGMKALLTLSGGDMRKVLNTLQSTWLAY-RDVTEDNVYTCVGHPLRADIDSILNWL--LN 346
+ +++ +S GDMR +NTLQ L + ++VY GH + + + + L LN
Sbjct: 202 EAINSIIKISKGDMRSAINTLQHVNLVIGGSINTEDVYKISGHCMPEIVTDVFDILFSLN 261
Query: 345 ENDFSACFKSIQD---LKIAKGLALSDILAEVHTIIQRVKLPPEVLVSLLIKMSDAE 184
+N + KS+ D + + + ++L E+ I+ K + L+ + E
Sbjct: 262 KNKTKSLKKSVNDIITIVTENNITIFNLLEELKNIVMESKFTTSQKIFLIDNFAKTE 318
>UniRef50_UPI0000499C0F Cluster: Activator 1 40 kDa subunit; n=1;
Entamoeba histolytica HM-1:IMSS|Rep: Activator 1 40 kDa
subunit - Entamoeba histolytica HM-1:IMSS
Length = 315
Score = 136 bits (330), Expect = 5e-31
Identities = 78/222 (35%), Positives = 123/222 (55%), Gaps = 1/222 (0%)
Frame = -2
Query: 870 QFSSMVLELNAXDDRGIGIVRGQILSFASTRTIFKAG-PKLIILDEADAMTNDAQNALRR 694
++ VLELNA D+RGI +R I SF + + PK++ILDEAD+MT A ALRR
Sbjct: 68 RYKDAVLELNASDERGIETIRSTIKSFCEKKLVLPDNLPKIVILDEADSMTTAAFQALRR 127
Query: 693 IIEKYTENVRFCIICNYLGKIIPALQSRCTRFRFAPLKQDQIVPRLQEIVTTEGVKMSEG 514
+E +++ RF + CN KII +QSRC R F PL +++++ R++EI EGV + +
Sbjct: 128 TMEIHSKTTRFVLACNTPEKIIEPIQSRCARLTFRPLGEEELMNRIKEIAHCEGVDIEDD 187
Query: 513 GMKALLTLSGGDMRKVLNTLQSTWLAYRDVTEDNVYTCVGHPLRADIDSILNWLLNENDF 334
+KAL +S GDMRK +N LQ+ + +T++ VY P +I + L + DF
Sbjct: 188 AVKALEIVSEGDMRKAINALQTCAIIQGKITKEQVYQRNDLPSADNIIQAIQLCL-KKDF 246
Query: 333 SACFKSIQDLKIAKGLALSDILAEVHTIIQRVKLPPEVLVSL 208
I+ ++ G +DI+ + + ++ E+ V L
Sbjct: 247 DGALIEIKKVQ-QLGFDGNDIIDMIVRMFSKIDASEEIRVRL 287
>UniRef50_Q8QKY2 Cluster: EsV-1-87; n=1; Ectocarpus siliculosus
virus 1|Rep: EsV-1-87 - Ectocarpus siliculosus virus 1
Length = 324
Score = 136 bits (329), Expect = 7e-31
Identities = 80/255 (31%), Positives = 140/255 (54%), Gaps = 5/255 (1%)
Frame = -2
Query: 876 PQQFSSMVLELNAXDDRGIGIVRGQILSFASTRTIFKAGP---KLIILDEADAMTNDAQN 706
P+ + +L L++ D+RGI VR + +FA R + P K+++LDEAD+MT A
Sbjct: 64 PENRGARMLRLSSFDERGIDNVRTTVKNFARGRVGTEPTPTIAKIVVLDEADSMTPGAFQ 123
Query: 705 ALRRIIEKYTENVRFCIICNYLGKIIPALQSRCTRFRFAPLKQDQIVPRLQEIVTTEGVK 526
ALRRI++ Y+ RF I+CN KII +QSRC RF+ + Q+ R++++ GV+
Sbjct: 124 ALRRIMDVYSSTTRFIIVCNNSTKIIEPIQSRCAILRFSKVDDAQLRLRIRQVCDMAGVE 183
Query: 525 MSEGGMKALLTLSGGDMRKVLNTLQSTWLAYRDVTEDNVYTCVGHPLRADIDSILNWLLN 346
GG+ AL ++ GD+R +N+L S +R +T +NVY P A I I++ L N
Sbjct: 184 YDPGGIGALACVADGDVRSAINSLASIVSGFRRLTSENVYRTCRSPQPAKIVDIVDLLRN 243
Query: 345 ENDFSACFKSIQDL--KIAKGLALSDILAEVHTIIQRVKLPPEVLVSLLIKMSDAEARLA 172
+ + + ++ L + +G + +DIL+ + + + + + + + R+
Sbjct: 244 KGGYVEACRKLRGLCGEGGEGYSPTDILSSFFKALSVIDVRESQRIEIAKVIGLVQNRVL 303
Query: 171 SGSSERVELAALIAS 127
SG+S ++LAA++ S
Sbjct: 304 SGASSYLQLAAMLWS 318
>UniRef50_Q5CVS5 Cluster: Replication factor C like AAA ATpase; n=2;
Cryptosporidium|Rep: Replication factor C like AAA
ATpase - Cryptosporidium parvum Iowa II
Length = 335
Score = 136 bits (329), Expect = 7e-31
Identities = 90/271 (33%), Positives = 150/271 (55%), Gaps = 16/271 (5%)
Frame = -2
Query: 885 MYTPQQFSSMVLELNAXDDRGIGIVRGQILSFASTRTIFKAGP------------KLIIL 742
++ P ++ + +LELNA D+RGI +VR +I S+ TR + + K++IL
Sbjct: 64 LFGPNEYKNRILELNASDERGISVVRDKIKSW--TRQVVQCNKTHEITGNLLPSWKIVIL 121
Query: 741 DEADAMTNDAQNALRRIIEKYTENVRFCIICNYLGKIIPALQSRCTRFRFAPLKQDQIVP 562
DEA+ MT DAQ+ALRRIIE ++N RF IICNY+ KII L SRC +FRF P+ + +
Sbjct: 122 DEAEMMTADAQSALRRIIEVSSKNTRFVIICNYISKIIEPLASRCAKFRFQPISANSQIE 181
Query: 561 RLQEIVTTEGVKMSEGGMKALLTLSGGDMRKVLNTLQSTWLAY---RDVTEDNVYTCVGH 391
RL+ I + E V +G ++ ++ LS GD+R+ +N LQS + + ++ ++ G
Sbjct: 182 RLKYICSQEDVSYEDGVLETIVNLSQGDLRRGINILQSASELFGKDKRISMSSILDVSGV 241
Query: 390 PLRADIDSILNWLLNENDFSACFKSIQDLKIAKGLALSDILAEV-HTIIQRVKLPPEVLV 214
P I+ I+N S ++ + I +G ++ I + II K+
Sbjct: 242 PPIKIIERIINSCKILGVESILIETAK--LINEGWSVELIFKGLAEFIIMCDKIDDSKKA 299
Query: 213 SLLIKMSDAEARLASGSSERVELAALIASFQ 121
L++++S+A+A + GS+E + L + +S Q
Sbjct: 300 FLMLRISEADASVIDGSNEYLTLLNVCSSVQ 330
>UniRef50_A4I6D8 Cluster: Replication factor C, subunit 4, putative;
n=4; Trypanosomatidae|Rep: Replication factor C, subunit
4, putative - Leishmania infantum
Length = 360
Score = 135 bits (326), Expect = 2e-30
Identities = 88/262 (33%), Positives = 138/262 (52%), Gaps = 20/262 (7%)
Frame = -2
Query: 855 VLELNAXDDRGIGIVRGQILSFAST-----RTIFKAGP------------KLIILDEADA 727
VLELNA DDRG+ +VR +I FA T R F G K+++LDEAD+
Sbjct: 89 VLELNASDDRGLDVVREKIKLFAQTKKTLPRKFFSTGEGVAKDDHVVHLHKIVLLDEADS 148
Query: 726 MTNDAQNALRRIIEKYTENVRFCIICNYLGKIIPALQSRCTRFRFAPLKQDQIVPRLQEI 547
MT AQ ALRR +E ++ RF CN +II +QSRC RF L I+ RL +
Sbjct: 149 MTPAAQQALRRTMELHSSTTRFAFACNNSSRIIEPIQSRCAVVRFKKLSDADILKRLVYV 208
Query: 546 VTTEGVKMSEGGMKALLTLSGGDMRKVLNTLQSTWLAYRDVTEDNVYTCVGHPLRADIDS 367
+ E V ++ G++ALL L+ GD+R+ LN LQ+T Y V DNV+ P +++
Sbjct: 209 IQQENVSYTDDGLEALLYLAEGDLRQALNALQATHTGYGLVNADNVFKVCDQPHPLLVEN 268
Query: 366 ILNWLLNENDFSACFKSIQDLKIAKGLALSDILAEVHTIIQ-RVKLPPEVLVSL-LIK-M 196
++ + + + + + L + +G A D++A ++Q +L L L ++K +
Sbjct: 269 VITACVTKRNIEEAHREMNRL-LNRGYAPVDVIATFFKVVQTNARLFRSELQQLEVLKIV 327
Query: 195 SDAEARLASGSSERVELAALIA 130
+ R+A G ++LAA++A
Sbjct: 328 GETTMRIAEGVGTPLQLAAMLA 349
>UniRef50_Q8QN66 Cluster: EsV-1-224; n=1; Ectocarpus siliculosus
virus 1|Rep: EsV-1-224 - Ectocarpus siliculosus virus 1
Length = 324
Score = 132 bits (319), Expect = 1e-29
Identities = 87/259 (33%), Positives = 139/259 (53%), Gaps = 12/259 (4%)
Frame = -2
Query: 864 SSMVLELNAXDDRGIGIVRGQILSFASTRTIFKAGP---KLIILDEADAMTNDAQNALRR 694
S M LELNA D R IG +R QI F ++ KL+ILDEAD +T+ AQ ALR
Sbjct: 66 SIMTLELNAGDSRSIGTMRDQIHFFTRCSSVTDRSTNALKLVILDEADGLTSCAQRALRH 125
Query: 693 IIEKYTENVRFCIICNYLGKIIPALQSRCTRFRFAPLKQDQIVPRLQEIVTTEGVKMSEG 514
+IE + RFC+ CNY+ ++ L+SRCT F F+ + Q+ L+E+ E +++SE
Sbjct: 126 LIETTSGRARFCLCCNYISRLSSGLRSRCTSFSFSGIGNVQLAHTLREVARKEDLEISEE 185
Query: 513 GMKALLTLSGGDMRKVLNTLQS------TWLAYRDVTEDNVYTCVGHPLRADIDSILNWL 352
G+ A++ + GD R+ +N LQS T L RD + VY G P + I L
Sbjct: 186 GLNAVVKVCAGDARQGINLLQSLSLGDATTLVVRD--DQAVYATCGLPSPSQTSEIFEVL 243
Query: 351 LNENDFSACFKSIQD-LKIAKGLALSDILAEVHTII--QRVKLPPEVLVSLLIKMSDAEA 181
LN++ FS + ++ +++ + L I V +II + + + +L ++D E
Sbjct: 244 LNQS-FSVGYTTLTSFVELYQFSLLQMIPPLVESIISCSDKDIGVDTVGEVLSTLADVER 302
Query: 180 RLASGSSERVELAALIASF 124
L++G SE + + A++ +F
Sbjct: 303 CLSNGGSEGIAVGAMVGAF 321
>UniRef50_Q4WW89 Cluster: Replication factor C subunit; n=1;
Aspergillus fumigatus|Rep: Replication factor C subunit
- Aspergillus fumigatus (Sartorya fumigata)
Length = 389
Score = 132 bits (319), Expect = 1e-29
Identities = 78/171 (45%), Positives = 100/171 (58%), Gaps = 8/171 (4%)
Frame = -2
Query: 885 MYTPQQFSSMVLELNAXDDRGIGIVRGQILSFASTRTIFKA----GP----KLIILDEAD 730
+Y S MVLELNA DDR + V+ +I +FASTR IFK P KL+ILDEAD
Sbjct: 76 LYGDADMSQMVLELNASDDRSVHDVQIRIKAFASTRPIFKVPLRESPYNMFKLVILDEAD 135
Query: 729 AMTNDAQNALRRIIEKYTENVRFCIICNYLGKIIPALQSRCTRFRFAPLKQDQIVPRLQE 550
M + AQ ALRRIIE Y RFCII N + K++PAL SRC R RF PL+ I L +
Sbjct: 136 TMDHTAQMALRRIIEDYAAFTRFCIITNNIHKLLPALISRCARLRFPPLRPSAIRTLLLQ 195
Query: 549 IVTTEGVKMSEGGMKALLTLSGGDMRKVLNTLQSTWLAYRDVTEDNVYTCV 397
+ TTE +++ ++ L T S GDMR+ L LQ L ++D T +
Sbjct: 196 VATTENIQVRPEALEYLSTTSHGDMRQALAVLQECHLNSTFWSDDEPTTTI 246
>UniRef50_UPI0000498FA9 Cluster: activator 1 subunit; n=1; Entamoeba
histolytica HM-1:IMSS|Rep: activator 1 subunit -
Entamoeba histolytica HM-1:IMSS
Length = 329
Score = 130 bits (315), Expect = 3e-29
Identities = 82/253 (32%), Positives = 133/253 (52%), Gaps = 6/253 (2%)
Frame = -2
Query: 867 FSSMVLELNAXDDRGIGIVRGQILSFASTR-TIFKAGP--KLIILDEADAMTNDAQNALR 697
F VLELNA + RGI +VR + ++A T + P KLIILDE+DA+T DAQ ALR
Sbjct: 66 FKERVLELNASNQRGIEMVRTTLKNYAMQDVTHYDGTPDYKLIILDESDALTPDAQTALR 125
Query: 696 RIIEKYTENVRFCIICNYLGKIIPALQSRCTRFRFAPLKQDQIVPRLQEIVTTEGVKMSE 517
R++E +T+N RFC+ICNY+ +I+P + SRC +FRF+ L ++ + RLQ I EG ++
Sbjct: 126 RMMEDFTKNTRFCLICNYISRILPPISSRCIKFRFSALPKEIVSNRLQMICEKEGFSVTN 185
Query: 516 GGMKALLTLSGGDMRKVLNTLQSTWLAY-RDVTEDNVYTCVGHPLRADIDSILNWLLNEN 340
++A+ LS GD+R + LQ VT ++ G +I I++ L
Sbjct: 186 EAIQAVSILSEGDLRYGIGLLQKLSQGINHSVTPQDISNVAGVVPSKEITEIIH-LCQNG 244
Query: 339 DFSACFKSIQDLKIAKGLALSDILAEVHTII--QRVKLPPEVLVSLLIKMSDAEARLASG 166
+ + L + + + IL+++ + V L + L ++ ++A L
Sbjct: 245 SVNDLYLKAMSLVVEQNFSADSILSQLRDVYIEDCVNLTNQERCLFLQLIAQSDATLIDK 304
Query: 165 SSERVELAALIAS 127
+ + AL+ S
Sbjct: 305 TDPLFTICALLCS 317
>UniRef50_Q7R657 Cluster: GLP_574_161256_160291; n=1; Giardia
lamblia ATCC 50803|Rep: GLP_574_161256_160291 - Giardia
lamblia ATCC 50803
Length = 321
Score = 130 bits (313), Expect = 6e-29
Identities = 78/254 (30%), Positives = 137/254 (53%), Gaps = 8/254 (3%)
Frame = -2
Query: 864 SSMVLELNAXDDRGIGIVRGQILSFASTRTIFKAGP------KLIILDEADAMTNDAQNA 703
S+ VLELNA DD G+ ++R + F ++ ++ K++I+DE D M++ AQ +
Sbjct: 65 STHVLELNASDDSGVDVIRQTVKGFVTSGSVLSQQSSSATKFKIVIMDECDHMSSVAQAS 124
Query: 702 LRRIIEKYTENVRFCIICNYLGKIIPALQSRCTRFRFAPLKQDQIVPRLQEIVTTEGVKM 523
LRR++E ++ RFC++CNY K++PA+ SRC FRF P+ ++ + L++I EG++M
Sbjct: 125 LRRLMETSIKHARFCLLCNYPEKLLPAILSRCCAFRFLPVPRESCLLMLEKIADAEGMQM 184
Query: 522 SEGGMKALLTLSGGDMRKVLNTLQSTWLAYRD--VTEDNVYTCVGHPLRADIDSILNWLL 349
+ G + A+ ++ GD+R+ +N LQS L T D+VY V P A + LL
Sbjct: 185 APGALAAIHAVTDGDLRQAINVLQSLHLMTEKELATADDVYKLVAKPHPA----LGRELL 240
Query: 348 NENDFSACFKSIQDLKIAKGLALSDILAEVHTIIQRVKLPPEVLVSLLIKMSDAEARLAS 169
+ + IQ +A G + D++ V + ++ P + ++ E LA
Sbjct: 241 RPMPYVEKYGQIQGC-LAAGCSAEDVVQCVFRALMASEVEPRRKAEAVRALALVEEALAL 299
Query: 168 GSSERVELAALIAS 127
G++ ++A L A+
Sbjct: 300 GATLESQVAGLSAA 313
>UniRef50_A3ABV4 Cluster: Putative uncharacterized protein; n=1;
Oryza sativa (japonica cultivar-group)|Rep: Putative
uncharacterized protein - Oryza sativa subsp. japonica
(Rice)
Length = 389
Score = 129 bits (311), Expect = 1e-28
Identities = 65/117 (55%), Positives = 83/117 (70%), Gaps = 10/117 (8%)
Frame = -2
Query: 768 KAGPKLIILDEADAMTNDAQNALRR----------IIEKYTENVRFCIICNYLGKIIPAL 619
K K+++LDEADAMT DAQ ALRR +IEK+T + RF +ICN++ KIIPAL
Sbjct: 214 KQSVKMVLLDEADAMTKDAQFALRRATSSNLPHLTVIEKHTRSTRFALICNHVNKIIPAL 273
Query: 618 QSRCTRFRFAPLKQDQIVPRLQEIVTTEGVKMSEGGMKALLTLSGGDMRKVLNTLQS 448
QSRCTRFRFAPL + RL+ I+ +EG+ + +GG+ AL+ LS GDMRK LN LQS
Sbjct: 274 QSRCTRFRFAPLDGTHVRERLKHIIQSEGLDVDDGGLTALVRLSNGDMRKALNILQS 330
Score = 107 bits (258), Expect = 3e-22
Identities = 59/118 (50%), Positives = 77/118 (65%), Gaps = 13/118 (11%)
Frame = -2
Query: 834 DDRGIGIVRGQILSFASTRTIF---KAGPKLIILDEADAMTNDAQNALRR---------- 694
++RGI +VR QI FAS R++ K K+++LDEADAMT DAQ ALRR
Sbjct: 99 NERGIDVVRQQIQDFASARSLSFGAKQSVKMVLLDEADAMTKDAQFALRRATSSNLPHLT 158
Query: 693 IIEKYTENVRFCIICNYLGKIIPALQSRCTRFRFAPLKQDQIVPRLQEIVTTEGVKMS 520
+IEK+T + RF +ICN++ KIIPALQSRCTRFRFAPL + + + + EG K S
Sbjct: 159 VIEKHTRSTRFALICNHVNKIIPALQSRCTRFRFAPLDGNHVRETSKPLYHPEGAKQS 216
>UniRef50_Q4UIH2 Cluster: Replication factor C subunit (RPC2
homologue) , putative; n=3; Piroplasmida|Rep:
Replication factor C subunit (RPC2 homologue) , putative
- Theileria annulata
Length = 336
Score = 129 bits (311), Expect = 1e-28
Identities = 88/265 (33%), Positives = 139/265 (52%), Gaps = 16/265 (6%)
Frame = -2
Query: 885 MYTPQQFSSMVLELNAXDDRGIGIVRGQILSFASTR-TIFKAGP---------KLIILDE 736
+Y + VLELNA D+RGI +VR +I ++ + + P K+IILDE
Sbjct: 64 IYGLEGMRERVLELNASDERGIDVVRDRIKTYTRINISNNRVNPETNRVMPNYKMIILDE 123
Query: 735 ADAMTNDAQNALRRIIEKYTENVRFCIICNYLGKIIPALQSRCTRFRFAPLKQDQIVPRL 556
AD +T DAQ ALRR+IE Y+ RF +ICNYL KII + SRC+ F F P++ + + RL
Sbjct: 124 ADMITADAQAALRRVIENYSSISRFILICNYLHKIIGPIYSRCSVFHFKPIETNSQIDRL 183
Query: 555 QEIVTTEGVKMSEGGMKALLTLSGGDMRKVLNTLQ----STWLAYRDVTEDNVYTCVGHP 388
+ I EG+ K L T+S GDMRK + LQ ST Y ++TE+ +Y+ G P
Sbjct: 184 KYICNQEGITFDP---KFLTTISSGDMRKSITILQVILGSTACLYNEITENAIYSVSGKP 240
Query: 387 LRADIDSILNWLLN-ENDFSACFKSIQDLKIAKGLALSDILAEV-HTIIQRVKLPPEVLV 214
+ ++SI E D + K I + G +S I ++ +++ +
Sbjct: 241 PKRVVESIFEVCRRPEGDVESVCKQI----VHDGWDISSIFQQICEYVVESDSIGDIEKS 296
Query: 213 SLLIKMSDAEARLASGSSERVELAA 139
+ +++++ + L G S+ +LA+
Sbjct: 297 KISLELANRDFALLQGGSQYFQLAS 321
>UniRef50_Q9XI09 Cluster: F8K7.11 protein; n=11; Eukaryota|Rep:
F8K7.11 protein - Arabidopsis thaliana (Mouse-ear cress)
Length = 319
Score = 128 bits (310), Expect = 1e-28
Identities = 68/153 (44%), Positives = 95/153 (62%), Gaps = 8/153 (5%)
Frame = -2
Query: 885 MYTPQQFSSMVLELNAXDDRGIGIVRGQILSFAST------RTIFKAGP--KLIILDEAD 730
++ P+ + S VLELNA DDRGI +VR +I FA+ R P K+IILDEAD
Sbjct: 66 LFGPELYKSRVLELNASDDRGINVVRTKIKDFAAVAVGSNHRQSGYPCPSFKIIILDEAD 125
Query: 729 AMTNDAQNALRRIIEKYTENVRFCIICNYLGKIIPALQSRCTRFRFAPLKQDQIVPRLQE 550
+MT DAQNALRR +E Y++ RF ICNY+ +II L SRC +FRF PL ++ + R+
Sbjct: 126 SMTEDAQNALRRTMETYSKVTRFFFICNYISRIIEPLASRCAKFRFKPLSEEVMSNRILH 185
Query: 549 IVTTEGVKMSEGGMKALLTLSGGDMRKVLNTLQ 451
I EG+ + + L ++S GD+R+ + LQ
Sbjct: 186 ICNEEGLSLDGEALSTLSSISQGDLRRAITYLQ 218
>UniRef50_P40348 Cluster: Replication factor C subunit 2; n=7;
Saccharomycetales|Rep: Replication factor C subunit 2 -
Saccharomyces cerevisiae (Baker's yeast)
Length = 353
Score = 128 bits (310), Expect = 1e-28
Identities = 70/157 (44%), Positives = 97/157 (61%), Gaps = 11/157 (7%)
Frame = -2
Query: 885 MYTPQQFSSMVLELNAXDDRGIGIVRGQILSFASTRTIFKAGP-----------KLIILD 739
+Y P S +LELNA D+RGI IVR ++ +FA T+ K K+IILD
Sbjct: 82 LYGPDLMKSRILELNASDERGISIVREKVKNFARL-TVSKPSKHDLENYPCPPYKIIILD 140
Query: 738 EADAMTNDAQNALRRIIEKYTENVRFCIICNYLGKIIPALQSRCTRFRFAPLKQDQIVPR 559
EAD+MT DAQ+ALRR +E Y+ RFC+ICNY+ +II L SRC++FRF L + R
Sbjct: 141 EADSMTADAQSALRRTMETYSGVTRFCLICNYVTRIIDPLASRCSKFRFKALDASNAIDR 200
Query: 558 LQEIVTTEGVKMSEGGMKALLTLSGGDMRKVLNTLQS 448
L+ I E VK +G ++ +L +S GD+R+ + LQS
Sbjct: 201 LRFISEQENVKCDDGVLERILDISAGDLRRGITLLQS 237
>UniRef50_Q8SQM0 Cluster: REPLICATION FACTOR C (ACTIVATOR 1) 37kDa
SUBUNIT; n=2; Microsporidia|Rep: REPLICATION FACTOR C
(ACTIVATOR 1) 37kDa SUBUNIT - Encephalitozoon cuniculi
Length = 309
Score = 128 bits (308), Expect = 2e-28
Identities = 71/169 (42%), Positives = 102/169 (60%)
Frame = -2
Query: 855 VLELNAXDDRGIGIVRGQILSFASTRTIFKAGPKLIILDEADAMTNDAQNALRRIIEKYT 676
+LELNA D+RGI VR I SFA R + K+IILDEAD+MT AQ A+RR++E ++
Sbjct: 66 LLELNASDERGIDTVRTTIKSFAQRR-VKDCEFKIIILDEADSMTTTAQQAMRRVMEIHS 124
Query: 675 ENVRFCIICNYLGKIIPALQSRCTRFRFAPLKQDQIVPRLQEIVTTEGVKMSEGGMKALL 496
RF +ICN KI +QSRC RF ++Q I+ RL+EI EG++++ + ++
Sbjct: 125 SECRFILICNVFTKIFEPIQSRCAILRFDRIEQSVILKRLKEISEGEGIRITAEALDLVV 184
Query: 495 TLSGGDMRKVLNTLQSTWLAYRDVTEDNVYTCVGHPLRADIDSILNWLL 349
LS GDMR+ LN LQ+ + V +D + +G P I+ +L LL
Sbjct: 185 ELSDGDMRQSLNILQACINSPGTVDQDYIIKIIGLPSPKRIEKVLQRLL 233
>UniRef50_P53016 Cluster: Replication factor C subunit 4; n=2;
Caenorhabditis|Rep: Replication factor C subunit 4 -
Caenorhabditis elegans
Length = 334
Score = 128 bits (308), Expect = 2e-28
Identities = 73/176 (41%), Positives = 105/176 (59%), Gaps = 7/176 (3%)
Frame = -2
Query: 867 FSSMVLELNAXDDRGIGIVRGQILSFAST-------RTIFKAGPKLIILDEADAMTNDAQ 709
F VL+LNA D+RGI +VR +I SF+ + + K K+IILDE DAMT +AQ
Sbjct: 78 FHDRVLDLNASDERGIAVVRQKIQSFSKSSLGHSHREDVLKL--KIIILDEVDAMTREAQ 135
Query: 708 NALRRIIEKYTENVRFCIICNYLGKIIPALQSRCTRFRFAPLKQDQIVPRLQEIVTTEGV 529
A+RR+IE +++ RF +ICNY+ ++IP + SRC +FRF L + V RL+ I EG
Sbjct: 136 AAMRRVIEDFSKTTRFILICNYVSRLIPPVVSRCAKFRFKSLPAEIQVQRLRTICDAEGT 195
Query: 528 KMSEGGMKALLTLSGGDMRKVLNTLQSTWLAYRDVTEDNVYTCVGHPLRADIDSIL 361
MS+ +K ++ S GD+R+ + TLQS + +DN C LR DS+L
Sbjct: 196 PMSDDELKQVMEYSEGDLRRAVCTLQSLAPILKS-GDDNARNCY---LRGSSDSLL 247
>UniRef50_A5E7K0 Cluster: Activator 1 41 kDa subunit; n=1;
Lodderomyces elongisporus NRRL YB-4239|Rep: Activator 1
41 kDa subunit - Lodderomyces elongisporus (Yeast)
(Saccharomyces elongisporus)
Length = 402
Score = 126 bits (303), Expect = 1e-27
Identities = 72/161 (44%), Positives = 97/161 (60%), Gaps = 15/161 (9%)
Frame = -2
Query: 885 MYTPQQFSSMVLELNAXDDRGIGIVRGQILSFAS------TRTIFKAGP----KLIILDE 736
+Y P + S VLELNA D+RGI IVR +I +FA T + P K+IILDE
Sbjct: 92 LYGPNLYKSRVLELNASDERGISIVRQKIKNFAKLTVSNPTEDDLRNYPCPPYKIIILDE 151
Query: 735 ADAMTNDAQNALRRIIEKYTENVRFCIICNYLGKIIPALQSRCTRFRFAPLKQDQIVPRL 556
AD+MTNDAQ+ALRR +E Y RF ++CNY+ +II L SRC++FRF L + + RL
Sbjct: 152 ADSMTNDAQSALRRTMETYANITRFALVCNYITRIIDPLASRCSKFRFKLLNNENSLNRL 211
Query: 555 QEIVTTEGVKMSEGG-----MKALLTLSGGDMRKVLNTLQS 448
+ I E + + E G + +L +S GDMRK + LQS
Sbjct: 212 KYIAKEENLHLDEKGAPDEVLNEVLRISNGDMRKAITYLQS 252
>UniRef50_Q7QWA3 Cluster: GLP_177_25642_24674; n=1; Giardia lamblia
ATCC 50803|Rep: GLP_177_25642_24674 - Giardia lamblia
ATCC 50803
Length = 322
Score = 124 bits (300), Expect = 2e-27
Identities = 82/245 (33%), Positives = 126/245 (51%), Gaps = 4/245 (1%)
Frame = -2
Query: 852 LELNAXDDRGIGIVRGQILSFASTRTIFKAG-PKLIILDEADAMTNDAQNALRRIIEKYT 676
LELNA D+R + +R ++ +FA + AG KL+ LDE DAMT AQ LRRI++ T
Sbjct: 71 LELNASDERNVSDIRAKVKTFAQKQVTLPAGIQKLVFLDECDAMTEAAQQVLRRIMDDET 130
Query: 675 ENVRFCIICNYLGKIIPALQSRCTRFRFAPLKQDQIVPRLQEIVTTEGVKMSEGGMKALL 496
+ RFC+ CN + K+I +QSRC R P Q +++ LQEI EGVK +K L+
Sbjct: 131 GSTRFCLACNNISKVIEPVQSRCCVLRIMPATQAELIKYLQEICEKEGVKSDTEALKELI 190
Query: 495 TLSGGDMRKVLNTLQSTWLAYRDV-TEDNVYTCVGHPLRADIDSILNWLLNENDFSACFK 319
++SG D+R LN+LQ A V T V + ID ++ LL F +
Sbjct: 191 SISGNDVRSCLNSLQLVADANNKVITVAGVQKALSTIDVKVIDQVMK-LLTSGKFDDGWM 249
Query: 318 SIQDLKIAKGLALSDILAEV--HTIIQRVKLPPEVLVSLLIKMSDAEARLASGSSERVEL 145
I D ++ +G DI + + + ++ V S+L ++ A+ + S ++L
Sbjct: 250 LI-DNQLNEGYNYDDIYNAMFRYALNSETEINDVVRASMLRILASLHAKSKTTVSSPLQL 308
Query: 144 AALIA 130
L+A
Sbjct: 309 CRLLA 313
>UniRef50_Q8QNA5 Cluster: EsV-1-182; n=1; Ectocarpus siliculosus
virus 1|Rep: EsV-1-182 - Ectocarpus siliculosus virus 1
Length = 326
Score = 124 bits (299), Expect = 3e-27
Identities = 79/248 (31%), Positives = 134/248 (54%), Gaps = 11/248 (4%)
Frame = -2
Query: 855 VLELNAXDDRGIGIVRGQILSFASTR-TIFKAG--P-KLIILDEADAMTNDAQNALRRII 688
VLELNA D+RG+ +VR +I +F+ + F+ G P KL+ILDEAD MT DAQ+ALRR +
Sbjct: 69 VLELNASDERGLDVVRDKIKTFSKMSISSFQPGCPPFKLVILDEADTMTADAQSALRRTM 128
Query: 687 EKYTENVRFCIICNYLGKIIPALQSRCTRFRFAPLKQDQIVPRLQEIVTTEGV---KMSE 517
E ++ RFC++CNY+ KII L SRC +FRF+ L + RL I E + S
Sbjct: 129 ETHSVVTRFCLVCNYVSKIIAPLASRCAKFRFSTLAPKSMKGRLLHICERENIIFENCSR 188
Query: 516 GGMKALLTLSGGDMRKVLNTLQSTWLAYRDVTEDNVYTCVGHPLRADIDSILNWLLNEND 337
+ A++ S GDMR +N LQ+ R VT +++ G D + + + ++
Sbjct: 189 SVLDAIVKSSRGDMRSAVNLLQTVSQQPR-VTPESIVEIAGEVPERVFDMLWSAVTSQPR 247
Query: 336 FSACFKSIQDLK---IAKGLALSDILAEVH-TIIQRVKLPPEVLVSLLIKMSDAEARLAS 169
F+++ D + +G + +L+E+ ++ ++ ++ + + + + L
Sbjct: 248 QPGHFEAVTDAVSTFVGEGYPVGKVLSEIQGRVVHSGEIEDADKAAICLSLMETDRCLND 307
Query: 168 GSSERVEL 145
G+ E ++L
Sbjct: 308 GADEELQL 315
>UniRef50_Q0UV64 Cluster: Putative uncharacterized protein; n=1;
Phaeosphaeria nodorum|Rep: Putative uncharacterized
protein - Phaeosphaeria nodorum (Septoria nodorum)
Length = 411
Score = 120 bits (290), Expect = 4e-26
Identities = 71/172 (41%), Positives = 99/172 (57%), Gaps = 26/172 (15%)
Frame = -2
Query: 885 MYTPQQFSSMVLELNAXDDRGIGIVRGQI-------LSFASTRTI--------------- 772
+Y P+ S VLELNA D+RGI IVR ++ LS A T +
Sbjct: 90 LYGPELMKSRVLELNASDERGISIVRQKVKDFARQQLSVAPTYNVMTEDKDGGEAKMVRY 149
Query: 771 ---FKAGP-KLIILDEADAMTNDAQNALRRIIEKYTENVRFCIICNYLGKIIPALQSRCT 604
+ P K+I+LDEAD+MT DAQ+ALRR +E Y+ RFC++CNY+ +II L SRC+
Sbjct: 150 RDKYSCPPFKIIVLDEADSMTQDAQSALRRTMETYSRMTRFCLVCNYVTRIIDPLASRCS 209
Query: 603 RFRFAPLKQDQIVPRLQEIVTTEGVKMSEGGMKALLTLSGGDMRKVLNTLQS 448
+FRF L Q V R+ +I E VK+ G + L+ ++ GD+RK + LQS
Sbjct: 210 KFRFKSLDQGNAVRRVDDIAKLEDVKLDAGVSEELVRVADGDLRKAITFLQS 261
>UniRef50_Q5D9J2 Cluster: SJCHGC06117 protein; n=1; Schistosoma
japonicum|Rep: SJCHGC06117 protein - Schistosoma
japonicum (Blood fluke)
Length = 157
Score = 118 bits (284), Expect = 2e-25
Identities = 61/148 (41%), Positives = 95/148 (64%)
Frame = -2
Query: 528 KMSEGGMKALLTLSGGDMRKVLNTLQSTWLAYRDVTEDNVYTCVGHPLRADIDSILNWLL 349
+M + G+KA+ + GDMRK +N LQST ++ + V +VY CV +P +I S+L+ LL
Sbjct: 12 QMKDDGVKAIYQFASGDMRKSINLLQSTSMSSKTVDGPSVYACVAYPSPDEIRSLLDHLL 71
Query: 348 NENDFSACFKSIQDLKIAKGLALSDILAEVHTIIQRVKLPPEVLVSLLIKMSDAEARLAS 169
NE S + +I +K KG+AL DI+ E+H +I R+ LP + LLI +SD E R++
Sbjct: 72 NE-PISTAYHNIMAVKNLKGIALQDIITEIHPLIMRITLPDAIRCDLLIALSDIEHRMSQ 130
Query: 168 GSSERVELAALIASFQIARDQVKLDTEV 85
G+SER++L A I++F R +V L+ +V
Sbjct: 131 GASERLQLGAFISAF--TRAKVALEAKV 156
>UniRef50_UPI0000E4A8C8 Cluster: PREDICTED: similar to replication
factor C subunit RFC5; n=2; Strongylocentrotus
purpuratus|Rep: PREDICTED: similar to replication factor
C subunit RFC5 - Strongylocentrotus purpuratus
Length = 292
Score = 117 bits (282), Expect = 3e-25
Identities = 69/142 (48%), Positives = 92/142 (64%), Gaps = 13/142 (9%)
Frame = -2
Query: 531 VKMSEGGMKALLTLSGGDMRKVLNTLQSTWLAYRD---VTEDNVYTCVGHPLRADIDSIL 361
V M+E G KAL+TL+ GDMR+V+N LQ + D VTE+NVY C GHPLR DI++I+
Sbjct: 130 VDMTEDGKKALITLAKGDMRRVINILQVCCHSLPDSDQVTEENVYLCTGHPLRTDIENIV 189
Query: 360 NWLLNENDFSACFKSIQDLKIAKGLALSDILAEVHTIIQRVKL----------PPEVLVS 211
NW+LNE DF+A F I LK KGLAL DIL + ++ L P+V +
Sbjct: 190 NWMLNE-DFTAAFNHINQLKTLKGLALLDILEGLLYADFKMNLLSPSDKKLCRVPKVRIY 248
Query: 210 LLIKMSDAEARLASGSSERVEL 145
LL KMSD E RLA+G+SE++++
Sbjct: 249 LLDKMSDIEYRLAAGTSEKLQV 270
Score = 112 bits (270), Expect = 1e-23
Identities = 53/64 (82%), Positives = 60/64 (93%)
Frame = -2
Query: 885 MYTPQQFSSMVLELNAXDDRGIGIVRGQILSFASTRTIFKAGPKLIILDEADAMTNDAQN 706
+Y P++F+SMVLELNA DDRGIGIVRG IL+FASTRTIFK+G KL+ILDEADAMTNDAQN
Sbjct: 58 LYAPKEFNSMVLELNASDDRGIGIVRGSILNFASTRTIFKSGFKLVILDEADAMTNDAQN 117
Query: 705 ALRR 694
ALRR
Sbjct: 118 ALRR 121
>UniRef50_Q9V2G4 Cluster: Replication factor C small subunit (RFC
small subunit) (Clamp loader small subunit) (PabRFC small
subunit) [Contains: Pab RFC-1 intein; Pab RFC-2 intein];
n=2; Euryarchaeota|Rep: Replication factor C small
subunit (RFC small subunit) (Clamp loader small subunit)
(PabRFC small subunit) [Contains: Pab RFC-1 intein; Pab
RFC-2 intein] - Pyrococcus abyssi
Length = 1437
Score = 116 bits (278), Expect = 1e-24
Identities = 58/178 (32%), Positives = 102/178 (57%)
Frame = -2
Query: 651 CNYLGKIIPALQSRCTRFRFAPLKQDQIVPRLQEIVTTEGVKMSEGGMKALLTLSGGDMR 472
CNY KII +QSRC FRF PL + I RL+ I EG++++E G++A+L ++ GDMR
Sbjct: 1256 CNYSSKIIEPIQSRCAIFRFRPLNDEDIAKRLRYIAENEGLELTEEGLQAILYIAEGDMR 1315
Query: 471 KVLNTLQSTWLAYRDVTEDNVYTCVGHPLRADIDSILNWLLNENDFSACFKSIQDLKIAK 292
+ +N LQ+ R +T++NV+ DI ++ L N F + ++++ + +
Sbjct: 1316 RAINILQAAAALDRKITDENVFLVASRARPEDIREMMLLALKGN-FLKAREKLREILLKQ 1374
Query: 291 GLALSDILAEVHTIIQRVKLPPEVLVSLLIKMSDAEARLASGSSERVELAALIASFQI 118
GL+ D+L ++H + + + + V L K+ + RL G++E ++L AL+A F +
Sbjct: 1375 GLSGEDVLVQMHREVFNLPIDEPMKVYLADKIGEYNFRLVEGANEMIQLEALLAQFTL 1432
Score = 79.8 bits (188), Expect = 9e-14
Identities = 37/68 (54%), Positives = 49/68 (72%)
Frame = -2
Query: 852 LELNAXDDRGIGIVRGQILSFASTRTIFKAGPKLIILDEADAMTNDAQNALRRIIEKYTE 673
LELNA D+RGI ++R ++ FA T+ I A K+I LDEADA+T DAQ ALRR +E ++
Sbjct: 581 LELNASDERGINVIREKVKEFARTKPIGGASFKIIFLDEADALTQDAQQALRRTMEMFSS 640
Query: 672 NVRFCIIC 649
NVRF + C
Sbjct: 641 NVRFILSC 648
>UniRef50_UPI0000DB75B4 Cluster: PREDICTED: similar to CG8142-PA;
n=1; Apis mellifera|Rep: PREDICTED: similar to CG8142-PA
- Apis mellifera
Length = 310
Score = 115 bits (276), Expect = 2e-24
Identities = 61/122 (50%), Positives = 83/122 (68%), Gaps = 7/122 (5%)
Frame = -2
Query: 867 FSSMVLELNAXDDRGIGIVRGQILSFAST-----RTIFKAGP--KLIILDEADAMTNDAQ 709
+ VLELNA D+RGI +VR +I SFA R K+ P K+I+LDEAD+MT AQ
Sbjct: 94 YKERVLELNASDERGIQVVREKIKSFAQLTAGGMRDDGKSCPPFKIIVLDEADSMTGAAQ 153
Query: 708 NALRRIIEKYTENVRFCIICNYLGKIIPALQSRCTRFRFAPLKQDQIVPRLQEIVTTEGV 529
ALRR +EK + + RFC+ICNY+ +II L SRCT+FRF PL +++I+ RL+ I E +
Sbjct: 154 AALRRTMEKESHSTRFCLICNYVSRIIEPLTSRCTKFRFKPLGENKIIERLEYICKEEDL 213
Query: 528 KM 523
K+
Sbjct: 214 KI 215
>UniRef50_Q9GR07 Cluster: Replication factor C subunit 2; n=6;
Plasmodium|Rep: Replication factor C subunit 2 -
Plasmodium falciparum
Length = 330
Score = 113 bits (273), Expect = 4e-24
Identities = 75/265 (28%), Positives = 137/265 (51%), Gaps = 12/265 (4%)
Frame = -2
Query: 885 MYTPQQFSSMVLELNAXDDRGIGIVRGQILSF-----------ASTRTIFKAGPKLIILD 739
++ + S VLELNA DDRGI +VR +I ++ + T+ + + KL++LD
Sbjct: 61 LFGKENISERVLELNASDDRGINVVREKIKAYTRISISKNKIHSETKEVLPSW-KLVVLD 119
Query: 738 EADAMTNDAQNALRRIIEKYTENVRFCIICNYLGKIIPALQSRCTRFRFAPLKQDQIVPR 559
EAD MT DAQ+ALRRIIE Y+ RF +ICNY+ KI + SRC+ +RF + + +
Sbjct: 120 EADMMTEDAQSALRRIIEIYSNVTRFILICNYIHKISDPIFSRCSCYRFQSIPINIKKEK 179
Query: 558 LQEIVTTEGVKMSEGGMKALLTLSGGDMRKVLNTLQSTWLAYRDVTEDNVYTCVGHPLRA 379
L I E + + + ++ ++ + GD+R+ ++ LQ +T ++V G P
Sbjct: 180 LLYICQNENIDIVDDALEKIIETTEGDLRRAVSILQLCSCINTKITLNSVLDVSGLPSDN 239
Query: 378 DIDSILNWLLNENDFSACFKSIQDLKIAKGLALSDILAEVHT-IIQRVKLPPEVLVSLLI 202
+ I++ D K++QD+ I G ++ I + + + + +L+
Sbjct: 240 IVYKIID-ACKMKDLKLVEKTVQDI-IEDGFDVAYIFKSFNNYFVTNTEYEDSLKYQILL 297
Query: 201 KMSDAEARLASGSSERVELAALIAS 127
++ + RL G+++ ++L + +S
Sbjct: 298 ELFRHDYRLHCGATQYIQLLSFASS 322
>UniRef50_Q5UQ72 Cluster: Putative replication factor C small
subunit L510; n=1; Acanthamoeba polyphaga mimivirus|Rep:
Putative replication factor C small subunit L510 -
Mimivirus
Length = 363
Score = 113 bits (272), Expect = 6e-24
Identities = 62/155 (40%), Positives = 93/155 (60%), Gaps = 8/155 (5%)
Frame = -2
Query: 873 QQFSSMVLELNAXDDRGIGIVRGQILSFASTRTI---FKAGP-----KLIILDEADAMTN 718
+ F + V+E NA DDRGI VR +I + A + G K+IILDEAD+MT+
Sbjct: 67 EHFQNRVIEFNASDDRGINAVREKITNEAKKYVAEIKLEDGTIIPSYKIIILDEADSMTD 126
Query: 717 DAQNALRRIIEKYTENVRFCIICNYLGKIIPALQSRCTRFRFAPLKQDQIVPRLQEIVTT 538
+AQ+ALR IIE+Y+ RFC ICNY+ KI A++SRC+ F L + +V +L +I
Sbjct: 127 EAQDALRVIIEQYSTATRFCFICNYITKITDAIKSRCSSVYFKKLSDECMVEKLNDISLK 186
Query: 537 EGVKMSEGGMKALLTLSGGDMRKVLNTLQSTWLAY 433
E +++ + + ++ +S GDMRK + LQ+ Y
Sbjct: 187 ESMELPKNILHTIIDVSNGDMRKAIMLLQNFKYTY 221
>UniRef50_Q9QXI2 Cluster: Replication factor C subunit 2; n=8;
Eutheria|Rep: Replication factor C subunit 2 - Rattus
norvegicus (Rat)
Length = 216
Score = 111 bits (267), Expect = 2e-23
Identities = 59/206 (28%), Positives = 110/206 (53%)
Frame = -2
Query: 747 ILDEADAMTNDAQNALRRIIEKYTENVRFCIICNYLGKIIPALQSRCTRFRFAPLKQDQI 568
ILDEAD+MT+ AQ ALRR +E Y++ RF + CN KII +QSRC R+ L Q+
Sbjct: 1 ILDEADSMTDGAQQALRRTMEIYSKTTRFALACNASDKIIEPIQSRCGWLRYTKLTDAQV 60
Query: 567 VPRLQEIVTTEGVKMSEGGMKALLTLSGGDMRKVLNTLQSTWLAYRDVTEDNVYTCVGHP 388
+ RL ++ E V ++ G++A++ + GDMR+ LN LQST+ + + +NV+ P
Sbjct: 61 LSRLMNVIEKEKVPYTDDGLEAIIFTAQGDMRQALNNLQSTFSGFGYINSENVFKVCDEP 120
Query: 387 LRADIDSILNWLLNENDFSACFKSIQDLKIAKGLALSDILAEVHTIIQRVKLPPEVLVSL 208
+ ++ ++ N +K + L G + D++ + + + + + +
Sbjct: 121 HPLLVKEMIQHCVDAN-IDEAYKILAHL-WHLGYSPEDVIGNIFRVCKTFPMAEYLKLEF 178
Query: 207 LIKMSDAEARLASGSSERVELAALIA 130
+ ++ ++A G + +++A L+A
Sbjct: 179 IKEIGYTHMKVAEGVNSLLQMAGLLA 204
>UniRef50_Q58817 Cluster: Replication factor C small subunit (RFC
small subunit) (Clamp loader small subunit) [Contains:
Mja RFC-1 intein; Mja RFC-2 intein; Mja RFC- 3 intein];
n=1; Methanocaldococcus jannaschii|Rep: Replication
factor C small subunit (RFC small subunit) (Clamp loader
small subunit) [Contains: Mja RFC-1 intein; Mja RFC-2
intein; Mja RFC- 3 intein] - Methanococcus jannaschii
Length = 1847
Score = 111 bits (267), Expect = 2e-23
Identities = 60/178 (33%), Positives = 99/178 (55%)
Frame = -2
Query: 651 CNYLGKIIPALQSRCTRFRFAPLKQDQIVPRLQEIVTTEGVKMSEGGMKALLTLSGGDMR 472
CNY KIIP +QSRC FRF+PLK++ I +L+EI EG+ ++E G++A++ +S GDMR
Sbjct: 1668 CNYPSKIIPPIQSRCAVFRFSPLKKEDIAKKLKEIAEKEGLNLTESGLEAIIYVSEGDMR 1727
Query: 471 KVLNTLQSTWLAYRDVTEDNVYTCVGHPLRADIDSILNWLLNENDFSACFKSIQDLKIAK 292
K +N LQ T A DV +D + V R + + L + F + L +
Sbjct: 1728 KAINVLQ-TAAALSDVIDDEIVYKVSSRARPEEVKKMMELALDGKFMEARDLLYKLMVEW 1786
Query: 291 GLALSDILAEVHTIIQRVKLPPEVLVSLLIKMSDAEARLASGSSERVELAALIASFQI 118
G++ DIL ++ I + + V L + + + R+ G++ER++L+AL+A +
Sbjct: 1787 GMSGEDILNQMFREINSLDIDERKKVELADAIGETDFRIVEGANERIQLSALLAKMAL 1844
Score = 68.9 bits (161), Expect = 2e-10
Identities = 32/66 (48%), Positives = 46/66 (69%)
Frame = -2
Query: 846 LNAXDDRGIGIVRGQILSFASTRTIFKAGPKLIILDEADAMTNDAQNALRRIIEKYTENV 667
L+ D+RGI ++R ++ FA T+ I K+I LDE+DA+T DAQNALRR +EKY++
Sbjct: 1060 LHNSDERGIDVIRTKVKDFARTKPIGDVPFKIIFLDESDALTADAQNALRRTMEKYSDVC 1119
Query: 666 RFCIIC 649
RF + C
Sbjct: 1120 RFILSC 1125
>UniRef50_Q7QUZ0 Cluster: GLP_61_35037_36092; n=1; Giardia lamblia
ATCC 50803|Rep: GLP_61_35037_36092 - Giardia lamblia
ATCC 50803
Length = 351
Score = 110 bits (265), Expect = 4e-23
Identities = 72/168 (42%), Positives = 95/168 (56%), Gaps = 22/168 (13%)
Frame = -2
Query: 882 YTPQQFSSMVLELNAXDDRGIGIVRGQILSFASTRTIFKAGP------------KLIILD 739
+ P+ + + V E NA DRGI IVR +I S A RT+ P ++IILD
Sbjct: 61 FGPRFWRARVSEFNASTDRGIKIVRERIKSIA--RTVIAVAPDDVKAVYPCPDFQVIILD 118
Query: 738 EADAMTNDAQNALRRIIEKYTENVRFCIICNYLGKIIPALQSRCTRFRFAPLKQDQIVPR 559
EADA+T ++Q ALRRIIE ++E RFCIICNY +II + SRC RF F+ L + I+ R
Sbjct: 119 EADALTRESQAALRRIIEDFSETTRFCIICNYPSQIIAPIVSRCARFAFSSLPRPLIIDR 178
Query: 558 LQEIVTTE-------GVKMSEGGMKAL---LTLSGGDMRKVLNTLQST 445
L+ I E K+S +AL TLS GDMR + LQ+T
Sbjct: 179 LESICYAEMHQLRNANEKLSSSASEALGEVATLSQGDMRAAITLLQAT 226
>UniRef50_Q5UQ47 Cluster: Putative replication factor C small
subunit R395; n=1; Acanthamoeba polyphaga mimivirus|Rep:
Putative replication factor C small subunit R395 -
Mimivirus
Length = 319
Score = 110 bits (265), Expect = 4e-23
Identities = 73/259 (28%), Positives = 125/259 (48%), Gaps = 3/259 (1%)
Frame = -2
Query: 873 QQFSSMVLELNAXDDRGIGIVRGQILSFASTRTIFKAGP-KLIILDEADAMTNDAQNALR 697
+ S LE+NA +DRG+ + I F + +F A K+I+LDEAD MT+ Q +
Sbjct: 65 EDMSQGYLEINAAEDRGVRSISTIIPPFC--KKVFAANKSKIILLDEADIMTSKCQYDIN 122
Query: 696 RIIEKYTENVRFCIICNYLGKIIPALQSRCTRFRFAPLKQDQIVPRLQEIVTTEGVKMSE 517
+I+K+ +F CN KII +QS C RF L +QI L +I E + E
Sbjct: 123 NMIKKFGRKTKFIFTCNDSSKIIEDIQSICRILRFKKLTDEQINQYLSKICVNEKIPYDE 182
Query: 516 GGMKALLTLSGGDMRKVLNTLQSTWLAYRDVTEDNVYTCVGHPLRADIDSILNWLLNEND 337
G++ + +S GDMRK +N LQ T + +T++ V P DI I++ L N
Sbjct: 183 QGLRTICYISNGDMRKSINDLQKTAFTFEKITKNLVLKICKVPDPEDIRKIISLCLESNL 242
Query: 336 FSACFKSIQDLKIAKGLALSDILAEVHTIIQRVKLPPEVLVSLLIKMSDAEARLASGSSE 157
A I + I DI+ +++ + + + L++ +++ + ++ G
Sbjct: 243 EKA--DEIMNNIIKLDYCYFDIVTSFIYVLKVYDMSENLRLRLIMIVNETKINISKGLRS 300
Query: 156 RVELAALIASF--QIARDQ 106
+++L +I +I RD+
Sbjct: 301 KLQLTGMICRLIKEIQRDE 319
>UniRef50_Q8TUC8 Cluster: Replication factor C subunit; n=4;
Methanosarcinaceae|Rep: Replication factor C subunit -
Methanosarcina acetivorans
Length = 344
Score = 109 bits (263), Expect = 7e-23
Identities = 73/235 (31%), Positives = 126/235 (53%), Gaps = 2/235 (0%)
Frame = -2
Query: 822 IGIVRGQILSFASTRTIFKAGPKLIILDEADAMTNDAQNALRRIIEKYTENVRFCIICNY 643
I I + + +A +I A K+I +D A+++++DAQ+ALRRI+EKY+ RF +
Sbjct: 111 IDIFKEVVNEYAGMASI-DADYKIIYIDNAESLSSDAQHALRRIMEKYSSTCRFILSTTR 169
Query: 642 LGKIIPALQSRCTRFRFAPLKQDQIVPRLQEIVTTEGVKMSEGGMKALLTLSGGDMRKVL 463
K+I L+SR + FA + + L+ I E +K+S+G + A+L L+ G++ + +
Sbjct: 170 PSKLISPLRSRGLQVFFAYVPDSLLKTHLERIALAEKLKLSDGALDAVLYLAKGNVARAV 229
Query: 462 NTLQSTWLAYR--DVTEDNVYTCVGHPLRADIDSILNWLLNENDFSACFKSIQDLKIAKG 289
TLQ L ++TE+ VY ID +L L DF+ + I + I KG
Sbjct: 230 QTLQLAALRSEGAEITEEIVYEATMKGRDETIDELLEAAL-AGDFARGRQLIDGMIIEKG 288
Query: 288 LALSDILAEVHTIIQRVKLPPEVLVSLLIKMSDAEARLASGSSERVELAALIASF 124
L+ +DI + + + L++ +S+A+ARL +SER++L LI++F
Sbjct: 289 LSGTDIFEGLSEALIDSGETDADIARLIVSISEADARLTDATSERIQLEKLISTF 343
>UniRef50_Q86EA0 Cluster: Clone ZZD636 mRNA sequence; n=2;
Bilateria|Rep: Clone ZZD636 mRNA sequence - Schistosoma
japonicum (Blood fluke)
Length = 364
Score = 107 bits (257), Expect = 4e-22
Identities = 83/268 (30%), Positives = 131/268 (48%), Gaps = 24/268 (8%)
Frame = -2
Query: 867 FSSMVLELNAXDDRGIGIVRGQILSFA------STRTIFKAGP--------KLIILDEAD 730
+S VLELNA D+RGI ++R ++ +FA S +G KLIILDEAD
Sbjct: 87 YSERVLELNASDERGIVVIREKVKAFAHVAVSSSGSNTNSSGSSSTNIPPYKLIILDEAD 146
Query: 729 AMTNDAQNALRRIIEKYTENVRFCIICNYLGKIIPALQSRCTRFRFAPLKQDQIVPRLQE 550
+MT AQ ALRR +E RFC+ CNY+ +II + SRC +FRF PL + RL+
Sbjct: 147 SMTAPAQAALRRTMETEMRTTRFCLTCNYVTRIIEPITSRCAKFRFRPLDNEIARARLRY 206
Query: 549 IVTTEGVKMSEGGMKALLTLSGGDMRKVLNTLQSTWLAYRDVTEDNVYTC---------V 397
I E + +++ + LL+L GD+R+ + LQ V + N +
Sbjct: 207 IADAENLSVTDETLDHLLSLCRGDLRQGITMLQCVHQLIMSVDDSNSNSLSITSSELDEA 266
Query: 396 GHPLRADIDSILNWLLNENDFSACFKSIQDLKIAKGLALSDILAEVHT-IIQRVKLPPEV 220
+ D+ L +F I++L + +G + + ++H II L
Sbjct: 267 AAVVPTDVIKSLVKTSENGNFDDLQVIIKNL-LLEGYSAHQTIYQLHEYIINDETLSCIQ 325
Query: 219 LVSLLIKMSDAEARLASGSSERVELAAL 136
S+L ++ A++RL G+ E ++L A+
Sbjct: 326 KASILESLALADSRLIDGADEYLQLLAI 353
>UniRef50_Q6WI74 Cluster: Gp44; n=1; Vibrio phage KVP40|Rep: Gp44 -
Bacteriophage KVP40
Length = 318
Score = 103 bits (246), Expect = 8e-21
Identities = 58/143 (40%), Positives = 87/143 (60%), Gaps = 7/143 (4%)
Frame = -2
Query: 855 VLELNAXDDRGIGIVRGQILSFASTRTIFKAGPKLIILDEADAMTNDAQNALRRIIEKYT 676
VL +NA RGIG+V+ + +F ST + F PK +ILDEAD +T DAQ ALR +IE+Y+
Sbjct: 72 VLFVNASSSRGIGLVQNDLPAFCSTVS-FSGNPKAVILDEADNLTPDAQKALRGLIEQYS 130
Query: 675 ENVRFCIICNYLGKIIPALQSRCTRFRFAPLKQDQI------VPRLQEIVTTEGVKMSEG 514
+NVRF + CNY KI+ ++SR F F K++Q+ + R +I EGV ++
Sbjct: 131 KNVRFVLTCNYAQKILTPIRSRLQEFEFVYNKEEQLSCVKQMIVRSMQICKQEGVSVTNA 190
Query: 513 G-MKALLTLSGGDMRKVLNTLQS 448
+K L+ + D RK + +LQ+
Sbjct: 191 AVLKELVKRNYPDNRKTIVSLQN 213
>UniRef50_Q64AI6 Cluster: Replication factor C subunit; n=1;
uncultured archaeon GZfos31B6|Rep: Replication factor C
subunit - uncultured archaeon GZfos31B6
Length = 416
Score = 98.3 bits (234), Expect = 2e-19
Identities = 61/208 (29%), Positives = 108/208 (51%)
Frame = -2
Query: 756 KLIILDEADAMTNDAQNALRRIIEKYTENVRFCIICNYLGKIIPALQSRCTRFRFAPLKQ 577
++I +D A+A++ DAQ+ALRRI+EK++ RF + +L ++IPAL+SR F
Sbjct: 201 RMIFIDSAEALSMDAQHALRRIMEKHSRTCRFILSTTHLPRLIPALRSRGLNLFFDRASD 260
Query: 576 DQIVPRLQEIVTTEGVKMSEGGMKALLTLSGGDMRKVLNTLQSTWLAYRDVTEDNVYTCV 397
+ ++ I E +++ G++A++ + GD+ + LQ + R++T + VY
Sbjct: 261 ATVAAHIRCIAEAERAPITDDGVQAIVYEADGDLAFAIMVLQIASMKRREITANTVYEVD 320
Query: 396 GHPLRADIDSILNWLLNENDFSACFKSIQDLKIAKGLALSDILAEVHTIIQRVKLPPEVL 217
+ I +L+ L DF K I DL + + A DI + +I+ +
Sbjct: 321 LERIPEGILELLHASL-AGDFKTARKRIDDLLMEESGA--DITHRLRRVIENKSFDSALS 377
Query: 216 VSLLIKMSDAEARLASGSSERVELAALI 133
L I ++D + L SGS+ERV+L A +
Sbjct: 378 AELAILLADTDMNLISGSNERVQLEAWV 405
>UniRef50_A3CUW4 Cluster: Replication factor C; n=2;
Methanomicrobiales|Rep: Replication factor C -
Methanoculleus marisnigri (strain ATCC 35101 / DSM 1498
/ JR1)
Length = 336
Score = 98.3 bits (234), Expect = 2e-19
Identities = 65/241 (26%), Positives = 128/241 (53%)
Frame = -2
Query: 831 DRGIGIVRGQILSFASTRTIFKAGPKLIILDEADAMTNDAQNALRRIIEKYTENVRFCII 652
DR + + QI+ + ++ A KL++ ++A +T +AQ ALRR +E+Y+ RF +
Sbjct: 96 DRSLIVNFKQIVKWYASMRPLDADFKLMVFEDAHGLTFEAQQALRRTMERYSATCRFIFV 155
Query: 651 CNYLGKIIPALQSRCTRFRFAPLKQDQIVPRLQEIVTTEGVKMSEGGMKALLTLSGGDMR 472
IIPA+ SRC FAP++ ++ RL+EI+ EG + + ++ + GD+R
Sbjct: 156 TVRPSAIIPAIASRCLPLFFAPVESSLVLTRLEEILAAEGAAVPADDIDLIVYAAQGDLR 215
Query: 471 KVLNTLQSTWLAYRDVTEDNVYTCVGHPLRADIDSILNWLLNENDFSACFKSIQDLKIAK 292
+ + LQ +A R E ++ + ++ + L + +F A + + L I
Sbjct: 216 RAIMYLQ---IAARAEQEFDLAE-ISRSETTNVATSAFVALRDGNFDAARRIAESLMIEY 271
Query: 291 GLALSDILAEVHTIIQRVKLPPEVLVSLLIKMSDAEARLASGSSERVELAALIASFQIAR 112
GL+ +++ E+ + +R P +L + ++DA+ RL+ +++ V++ AL+A +IAR
Sbjct: 272 GLSAREVVGELRQVARREYNHP----ALAVALADADLRLSHNANDFVQINALLA--RIAR 325
Query: 111 D 109
+
Sbjct: 326 E 326
>UniRef50_Q8SSG6 Cluster: DNA REPLICATION FACTOR (ACTIVATOR 1) 36
kDa SUBUNIT; n=1; Encephalitozoon cuniculi|Rep: DNA
REPLICATION FACTOR (ACTIVATOR 1) 36 kDa SUBUNIT -
Encephalitozoon cuniculi
Length = 283
Score = 90.6 bits (215), Expect = 5e-17
Identities = 56/138 (40%), Positives = 81/138 (58%)
Frame = -2
Query: 864 SSMVLELNAXDDRGIGIVRGQILSFASTRTIFKAGPKLIILDEADAMTNDAQNALRRIIE 685
+S LELNA D+RGI ++R +I +AST K +ILDE + +T+DAQ+ LRR+IE
Sbjct: 54 ASQKLELNASDERGISVIREKIKVYASTL----GKDKTVILDECENLTSDAQHCLRRVIE 109
Query: 684 KYTENVRFCIICNYLGKIIPALQSRCTRFRFAPLKQDQIVPRLQEIVTTEGVKMSEGGMK 505
+ N RF I NY KII L+SR +F P + +I L+ I + EG+ +
Sbjct: 110 D-SVNTRFIFITNYPSKIIGPLRSRLVSVKFTP-TESKI---LENIGSKEGLGYDKELYH 164
Query: 504 ALLTLSGGDMRKVLNTLQ 451
+L L G D+R+ +N LQ
Sbjct: 165 RILKLCGNDLRRAINVLQ 182
>UniRef50_Q5UZL1 Cluster: Replication factor C small subunit; n=2;
Halobacteriaceae|Rep: Replication factor C small subunit
- Haloarcula marismortui (Halobacterium marismortui)
Length = 335
Score = 89.8 bits (213), Expect = 8e-17
Identities = 58/211 (27%), Positives = 107/211 (50%), Gaps = 2/211 (0%)
Frame = -2
Query: 756 KLIILDEADAMTNDAQNALRRIIEKYTENVRFCIICNYLGKIIPALQSRCTRFRFAPLKQ 577
K I+LD A+ M D Q ALRR++E+Y E +F I +IP ++SRC
Sbjct: 123 KTILLDNAEGMREDFQQALRRVMEQYYEATQFVIATRQPSAVIPPIRSRCFPVVMREPTH 182
Query: 576 DQIVPRLQEIVTTEGVKMSEGGMKALLTLSGGDMRKVLNTLQSTWLAYRDVTEDNVYTCV 397
++ L++IVT EGV + G++ + + GD+R + Q+T A +VT D + +
Sbjct: 183 EETASVLEDIVTAEGVDHDDDGIEYVAGYAEGDLRTAVLAAQTTAEAEGEVTMDAAFETL 242
Query: 396 GHPLRAD--IDSILNWLLNENDFSACFKSIQDLKIAKGLALSDILAEVHTIIQRVKLPPE 223
+ + AD ++ +++ + F+ ++ DL + +G SDIL +V + R + +
Sbjct: 243 -NAIEADDQVEQMVD-AAEDGRFTDARSTLDDLLVDEGYGASDILDDV-LEVARSRYSGD 299
Query: 222 VLVSLLIKMSDAEARLASGSSERVELAALIA 130
L + + + L ++ER+ L+ L+A
Sbjct: 300 RLAEIHTMAGETDMALVDAANERIHLSHLLA 330
>UniRef50_Q2FUA8 Cluster: Replication factor C subunit; n=1;
Methanospirillum hungatei JF-1|Rep: Replication factor C
subunit - Methanospirillum hungatei (strain JF-1 / DSM
864)
Length = 331
Score = 89.8 bits (213), Expect = 8e-17
Identities = 67/244 (27%), Positives = 122/244 (50%), Gaps = 2/244 (0%)
Frame = -2
Query: 852 LELNAXDDRGIGIVRGQILSFASTRTIFKAGPKLIILDEADAMTNDAQNALRRIIEKYTE 673
L L D+ + + I S+AS R I A K+++ ++A A+++D Q+ALRR +E+Y+
Sbjct: 90 LHLYRSDESFLSNFKHIISSYASIRPI-NAEFKVMLFEDAHALSHDIQHALRRTMERYSN 148
Query: 672 NVRFCIICNYLGKIIPALQSRCTRFRFAPLKQDQIVPRLQEIVT--TEGVKMSEGGMKAL 499
RF +IP ++SRC F PL +D I L I E ++S+ +
Sbjct: 149 TCRFIFCTTQASTLIPPIKSRCLPLFFTPLSRDIIRDCLNTIQNDIPEPDRVSDDETGLI 208
Query: 498 LTLSGGDMRKVLNTLQSTWLAYRDVTEDNVYTCVGHPLRADIDSILNWLLNENDFSACFK 319
+ +GGD+RK + LQ + N T + + L+ + D A K
Sbjct: 209 VAAAGGDLRKAIMYLQ---VRVETKIPFNPDTLSRTDTQEEACLALH-AMKAKDIVAAQK 264
Query: 318 SIQDLKIAKGLALSDILAEVHTIIQRVKLPPEVLVSLLIKMSDAEARLASGSSERVELAA 139
+QDL I +GL+ +I++ + + +R PE++ +++D +ARL +E +++ A
Sbjct: 265 RLQDLMITQGLSGREIISTLLQVTEREYNDPEIVT----RLADTDARLTHAGNEYLQVNA 320
Query: 138 LIAS 127
++A+
Sbjct: 321 MVAT 324
>UniRef50_Q7T2C9 Cluster: Rfc4 protein; n=34; Fungi/Metazoa
group|Rep: Rfc4 protein - Danio rerio (Zebrafish)
(Brachydanio rerio)
Length = 202
Score = 84.6 bits (200), Expect = 3e-15
Identities = 45/92 (48%), Positives = 61/92 (66%), Gaps = 7/92 (7%)
Frame = -2
Query: 885 MYTPQQFSSMVLELNAXDDRGIGIVRGQI-----LSFASTRTIFKAGP--KLIILDEADA 727
+Y P + VLELNA D+RGI +VR ++ L+ A TR K P K+IILDEAD+
Sbjct: 90 LYGPDLYRQRVLELNASDERGIQVVREKVKRFAQLTVAGTRPDGKTCPPFKIIILDEADS 149
Query: 726 MTNDAQNALRRIIEKYTENVRFCIICNYLGKI 631
MT+ AQ ALRR +EK + RFC+ICNY+ ++
Sbjct: 150 MTSAAQAALRRTMEKESRTTRFCLICNYVSRL 181
>UniRef50_A2SRY4 Cluster: DNA polymerase III gamma/tau subunits-like
protein; n=1; Methanocorpusculum labreanum Z|Rep: DNA
polymerase III gamma/tau subunits-like protein -
Methanocorpusculum labreanum (strain ATCC 43576 / DSM
4855 / Z)
Length = 332
Score = 81.8 bits (193), Expect = 2e-14
Identities = 64/212 (30%), Positives = 106/212 (50%), Gaps = 3/212 (1%)
Frame = -2
Query: 756 KLIILDEADAMTNDAQNALRRIIEKYTENVRFCIICNYLGKIIPALQSRCTRFRFAPLKQ 577
+LII D A +T DAQ ALRRI+E+Y++ RF + + L II ++SRC F P+ +
Sbjct: 121 RLIIFDGAGDLTKDAQAALRRIMEQYSQTCRFIFVTSSLASIIDPIRSRCVPLYFLPIDE 180
Query: 576 DQIVPRLQEIVTTEGV--KMSEGGMKALLTLSGGDMRKVLNTLQSTWLAYRDVTE-DNVY 406
+ L+ ++ EG +SE + L+ S GD+RK L L+ +A DV++ +
Sbjct: 181 ATMRDYLKHVLEQEGCVGSISEENLDMLILGSAGDLRKALVWLE--LMALHDVSDLSELM 238
Query: 405 TCVGHPLRADIDSILNWLLNENDFSACFKSIQDLKIAKGLALSDILAEVHTIIQRVKLPP 226
T L A ++L D +A + +++L+I G+ D+L + R L
Sbjct: 239 TTETGELSA--AAVL--AAGRGDSAAAQQIVENLQIEYGMNAGDVLRSL-----RRCLIG 289
Query: 225 EVLVSLLIKMSDAEARLASGSSERVELAALIA 130
+ L + S AE L G +E +++ A A
Sbjct: 290 NITPDLALLFSKAEITLVEGQNEYLQMNAFTA 321
>UniRef50_O67707 Cluster: DNA polymerase III gamma subunit; n=3;
Aquifex aeolicus|Rep: DNA polymerase III gamma subunit -
Aquifex aeolicus
Length = 473
Score = 81.0 bits (191), Expect = 4e-14
Identities = 57/194 (29%), Positives = 100/194 (51%), Gaps = 1/194 (0%)
Frame = -2
Query: 855 VLELNAXDDRGIGIVRGQILSFASTRTIFKAGPKLIILDEADAMTNDAQNALRRIIEKYT 676
++E++A +RGI VR L A K K+ I+DEA +T +A NAL + +E+
Sbjct: 90 LIEMDAASNRGIDDVRA--LKEAVNYKPIKGKYKVYIIDEAHMLTKEAFNALLKTLEEPP 147
Query: 675 ENVRFCIICNYLGKIIPALQSRCTRFRFAPLKQDQIVPRLQEIVTTEGVKMSEGGMKALL 496
F + KI+P + SRC R F+ +++++++ L++I EG++ EG ++ L
Sbjct: 148 PRTVFVLCTTEYDKILPTILSRCQRIIFSKVRKEKVIEYLKKICEKEGIECEEGALEVLA 207
Query: 495 TLSGGDMRKVLNTL-QSTWLAYRDVTEDNVYTCVGHPLRADIDSILNWLLNENDFSACFK 319
S G MR + L Q++ VT++ V +G + + S L LLN ++ K
Sbjct: 208 HASEGCMRDAASLLDQASVYGEGRVTKEVVENFLGILSQESVRSFLKLLLN-SEVDEAIK 266
Query: 318 SIQDLKIAKGLALS 277
+++L KG L+
Sbjct: 267 FLRELS-EKGYNLT 279
>UniRef50_Q98RV1 Cluster: Replication factor C 37 KD subunit; n=1;
Guillardia theta|Rep: Replication factor C 37 KD subunit
- Guillardia theta (Cryptomonas phi)
Length = 290
Score = 81.0 bits (191), Expect = 4e-14
Identities = 46/137 (33%), Positives = 79/137 (57%)
Frame = -2
Query: 861 SMVLELNAXDDRGIGIVRGQILSFASTRTIFKAGPKLIILDEADAMTNDAQNALRRIIEK 682
S +L+LNA + I I+R +I F + +I K++++DEAD ++ +Q ALRRIIEK
Sbjct: 53 SRILKLNASQNNSISIIRNKIKIFCRS-SIQSKKLKVVVIDEADLLSVISQEALRRIIEK 111
Query: 681 YTENVRFCIICNYLGKIIPALQSRCTRFRFAPLKQDQIVPRLQEIVTTEGVKMSEGGMKA 502
++ + RF +ICNY +II LQSR F+ L + I+ ++ + + + ++
Sbjct: 112 FSLSSRFILICNYPTRIIEPLQSRFILFKIENLNFENIIKLIKFYILKKNICYKLDFIEN 171
Query: 501 LLTLSGGDMRKVLNTLQ 451
+ + GD RK+ N L+
Sbjct: 172 DIHSTNGDKRKLKNCLK 188
>UniRef50_Q7UQ66 Cluster: DNA polymerase III gamma and tau subunits;
n=1; Pirellula sp.|Rep: DNA polymerase III gamma and tau
subunits - Rhodopirellula baltica
Length = 676
Score = 77.8 bits (183), Expect = 3e-13
Identities = 51/156 (32%), Positives = 86/156 (55%), Gaps = 2/156 (1%)
Frame = -2
Query: 855 VLELNAXDDRGIGIVRGQILSFASTRTIFKAGPKLIILDEADAMTNDAQNALRRIIEKYT 676
V+E++ +RGI +R + + R ++ K+ I+DE +T A NAL + +E+
Sbjct: 124 VIEIDGASNRGIDEIRS-LRANVGVRPS-RSRYKIYIIDEVHMLTGAAFNALLKTLEEPP 181
Query: 675 ENVRFCIICNYLGKIIPALQSRCTRFRFAPLKQDQIVPRLQEIVTTEGVKMSEGGMKALL 496
E+V+F KI + SRC RF FAP++ D+IV RL+EIV E + + ++ L
Sbjct: 182 EHVKFIFCTTDPEKIPITVLSRCQRFDFAPVESDKIVQRLREIVEAEDNTVEDEALELLA 241
Query: 495 TLSGGDMRKVLNTLQSTWLAYRD--VTEDNVYTCVG 394
+ G MR + L+ L++ D +T D+V+T +G
Sbjct: 242 RRAAGSMRDSQSLLEQV-LSFSDGHLTADHVHTMLG 276
>UniRef50_A2BZ44 Cluster: DNA polymerase, gamma and tau subunits;
n=5; Prochlorococcus marinus|Rep: DNA polymerase, gamma
and tau subunits - Prochlorococcus marinus (strain MIT
9515)
Length = 595
Score = 77.8 bits (183), Expect = 3e-13
Identities = 48/169 (28%), Positives = 81/169 (47%)
Frame = -2
Query: 855 VLELNAXDDRGIGIVRGQILSFASTRTIFKAGPKLIILDEADAMTNDAQNALRRIIEKYT 676
++E++A + G+ +R I T T +A K+ ++DE ++ A NAL + IE+
Sbjct: 94 IIEIDAASNTGVDNIREIIDGARFTPT--QARWKVYVIDECHMLSTAASNALLKTIEEPP 151
Query: 675 ENVRFCIICNYLGKIIPALQSRCTRFRFAPLKQDQIVPRLQEIVTTEGVKMSEGGMKALL 496
E V F + ++I +QSRC +F F + + I L EI E +K + +K +
Sbjct: 152 ERVVFILATTNPERVINTIQSRCQKFDFKRISSNTIFHNLSEIANKESIKFEDQALKLIA 211
Query: 495 TLSGGDMRKVLNTLQSTWLAYRDVTEDNVYTCVGHPLRADIDSILNWLL 349
S G MR + L L VT NV +G D+ +++N L+
Sbjct: 212 KRSNGGMRDAQSLLDQLSLLPNGVTTKNVQNLLGEVSENDLINLINALI 260
>UniRef50_Q8Q084 Cluster: Replication factor C large subunit; n=4;
Methanosarcinaceae|Rep: Replication factor C large
subunit - Methanosarcina mazei (Methanosarcina frisia)
Length = 610
Score = 77.8 bits (183), Expect = 3e-13
Identities = 50/186 (26%), Positives = 88/186 (47%), Gaps = 2/186 (1%)
Frame = -2
Query: 855 VLELNAXDDRGIGIVRGQILSFASTRTIFKAGPKLIILDEADAMTNDAQNALRRIIEKYT 676
V+ELNA D R G++ S AS T F G +LIILDEAD + A R I
Sbjct: 76 VIELNASDQRTAGVIEKIAGSAASMNTFF-GGKRLIILDEADNLHGTADRGGMRAISGII 134
Query: 675 ENVR--FCIICNYLGKIIPALQSRCTRFRFAPLKQDQIVPRLQEIVTTEGVKMSEGGMKA 502
++ +I N + + P +++ C +F ++ +VP L+++ +EGV S+ +
Sbjct: 135 KSTLQPIILIANDIYGLTPTVRNICLEIKFGSVQSRSMVPALKKVCESEGVSCSQEAVLQ 194
Query: 501 LLTLSGGDMRKVLNTLQSTWLAYRDVTEDNVYTCVGHPLRADIDSILNWLLNENDFSACF 322
+ +GGD R +N LQ+ + + +++ T G ++ +I + + D
Sbjct: 195 IAENAGGDFRSAINDLQAAANGKKALEAEDIST-AGRDVKENIFKAMQKIFKSTDCKRAL 253
Query: 321 KSIQDL 304
+S L
Sbjct: 254 ESAYGL 259
>UniRef50_A3IWH2 Cluster: DNA polymerase III gamma and tau subunits;
n=1; Cyanothece sp. CCY 0110|Rep: DNA polymerase III
gamma and tau subunits - Cyanothece sp. CCY 0110
Length = 373
Score = 77.4 bits (182), Expect = 5e-13
Identities = 41/134 (30%), Positives = 74/134 (55%)
Frame = -2
Query: 855 VLELNAXDDRGIGIVRGQILSFASTRTIFKAGPKLIILDEADAMTNDAQNALRRIIEKYT 676
V+EL+A G+ +R ++++ AS F A ++ I+DEA ++N AQNA + +E+
Sbjct: 97 VVELDAASHNGVDDIR-KLVADASYAP-FSARTRVFIIDEAHQLSNSAQNAFLKTLEEPN 154
Query: 675 ENVRFCIICNYLGKIIPALQSRCTRFRFAPLKQDQIVPRLQEIVTTEGVKMSEGGMKALL 496
+ +F + K++ ++SRC RF P+ Q ++ RL+EI EG + + ++A+
Sbjct: 155 NHTKFLLATTEPHKMLETVRSRCLPLRFRPISQSEVAKRLEEIAKNEGFSIDDSCLQAIA 214
Query: 495 TLSGGDMRKVLNTL 454
S G MR + L
Sbjct: 215 RSSKGGMRDSIQLL 228
>UniRef50_Q2FQR4 Cluster: Replication factor C large subunit; n=2;
Methanomicrobiales|Rep: Replication factor C large
subunit - Methanospirillum hungatei (strain JF-1 / DSM
864)
Length = 483
Score = 76.2 bits (179), Expect = 1e-12
Identities = 49/151 (32%), Positives = 76/151 (50%), Gaps = 2/151 (1%)
Frame = -2
Query: 855 VLELNAXDDRGIGIVRGQILSFASTRTIFKAGPKLIILDEADAMTNDAQNALRRIIEKYT 676
V+ELNA D R ++ AST ++ A KLIILDEAD + +A R I +
Sbjct: 64 VVELNASDQRTKAVIEKVAGGSASTGSLTGAARKLIILDEADNLQGNADRGGARAIAEVI 123
Query: 675 ENVR--FCIICNYLGKIIPALQSRCTRFRFAPLKQDQIVPRLQEIVTTEGVKMSEGGMKA 502
R +I N L + +++ CT+ +F L +VPRL+EI + E + S +
Sbjct: 124 RQARQPLILIANDLYGLDGTIRNLCTKVQFKALPAKSLVPRLREICSREQLTCSAQALTD 183
Query: 501 LLTLSGGDMRKVLNTLQSTWLAYRDVTEDNV 409
+ SGGD+R + L ++ + V ED+V
Sbjct: 184 IAEQSGGDIRSAVTMLYASAIGKDTVGEDDV 214
>UniRef50_Q5GQL5 Cluster: Sliding clamp loader gp44; n=5; root|Rep:
Sliding clamp loader gp44 - Cyanophage phage S-PM2
Length = 315
Score = 75.4 bits (177), Expect = 2e-12
Identities = 40/117 (34%), Positives = 66/117 (56%), Gaps = 2/117 (1%)
Frame = -2
Query: 873 QQFSSMVLELNAXDD-RGIGIVRGQILSFASTRTIFKAGP-KLIILDEADAMTNDAQNAL 700
+Q + + +N D+ R + VR ++ FA+T ++ P K++I+DEAD T+D Q +L
Sbjct: 61 EQIGASYIVINGSDEGRFLDTVRNRVRQFATTVSLTSGAPHKVVIIDEADNTTHDVQLSL 120
Query: 699 RRIIEKYTENVRFCIICNYLGKIIPALQSRCTRFRFAPLKQDQIVPRLQEIVTTEGV 529
R +E++ N RF CN+ KII L SRCT F K+ + + + Q V +G+
Sbjct: 121 RTAVEEFHGNCRFIFTCNFQNKIIEPLHSRCTVIDFRIKKEQEQILQGQFFVRLKGI 177
>UniRef50_A6R3U6 Cluster: Activator 1 37 kDa subunit; n=1;
Ajellomyces capsulatus NAm1|Rep: Activator 1 37 kDa
subunit - Ajellomyces capsulatus NAm1
Length = 231
Score = 75.4 bits (177), Expect = 2e-12
Identities = 43/90 (47%), Positives = 57/90 (63%), Gaps = 13/90 (14%)
Frame = -2
Query: 885 MYTPQQFSSMVLELNAXDDRGIGIVRGQILSFA------------STRTIFKAGP-KLII 745
+Y PQ + S +LELNA D+RGI IVR +I FA + R + P K+II
Sbjct: 28 LYGPQLYRSRILELNASDERGISIVREKIKDFARMQLSHPPLSDSAYREKYPCPPFKIII 87
Query: 744 LDEADAMTNDAQNALRRIIEKYTENVRFCI 655
LDEAD+MT DAQ+ALRR +E+Y+ RFC+
Sbjct: 88 LDEADSMTQDAQSALRRTMERYSRITRFCL 117
>UniRef50_A3ZPF5 Cluster: DNA polymerase III gamma and tau subunits;
n=1; Blastopirellula marina DSM 3645|Rep: DNA polymerase
III gamma and tau subunits - Blastopirellula marina DSM
3645
Length = 618
Score = 74.5 bits (175), Expect = 3e-12
Identities = 69/252 (27%), Positives = 119/252 (47%), Gaps = 3/252 (1%)
Frame = -2
Query: 855 VLELNAXDDRGIGIVRGQILSFASTRTIFKAGPKLIILDEADAMTNDAQNALRRIIEKYT 676
VLE++ +RGI +R Q+ S + R +A K+ I+DE T +A NAL + +E+
Sbjct: 105 VLEIDGASNRGIEEIR-QLRSNVNIRPS-RARFKIYIIDEVHMFTKEAFNALLKTLEEPP 162
Query: 675 ENVRFCIICNYLGKIIPALQSRCTRFRFAPLKQDQIVPRLQEIVTTEGVKMSEGGMKALL 496
E+V+F KI + SRC RF F ++ D+IV RL IV EGV ++ L
Sbjct: 163 EHVKFIFCTTDPEKIPITVLSRCQRFDFGGIRMDEIVTRLAYIVENEGVTAEPEALRLLA 222
Query: 495 TLSGGDMRKVLNTLQSTWLAY--RDVTEDNVYTCVGHPLRADIDSILNWLLNENDFSACF 322
+ G MR + L+ LA+ R++T +V +G I I+ L + +A
Sbjct: 223 RKANGSMRDSQSLLEQL-LAFGGREITVADVNQMLGAAGSEQIAVIMTALAARD--AAAV 279
Query: 321 KSIQDLKIAKGLALSDILAEVHTIIQ-RVKLPPEVLVSLLIKMSDAEARLASGSSERVEL 145
+ D + +G+ ++ ++ + + L +LL + +A ++ L
Sbjct: 280 LAYFDQALTRGIDPGQLIEQLLGFFRDMMTLAVGAGPTLLQTVLPTDAEKIEAVAKSYGL 339
Query: 144 AALIASFQIARD 109
A ++A+ QI D
Sbjct: 340 ANVMAAVQILDD 351
>UniRef50_A5UMF4 Cluster: Replication factor C large subunit; n=2;
Methanobacteriaceae|Rep: Replication factor C large
subunit - Methanobrevibacter smithii (strain PS / ATCC
35061 / DSM 861)
Length = 492
Score = 74.5 bits (175), Expect = 3e-12
Identities = 46/146 (31%), Positives = 80/146 (54%), Gaps = 4/146 (2%)
Frame = -2
Query: 873 QQFSSMVLELNAXDDRGIGIVRGQILSFASTRTIFKAGPKLIILDEADAM--TNDAQNAL 700
++FS + ELNA D R +++ I +S++++F KL+ILDE D + TND + +
Sbjct: 60 REFSEYI-ELNASDKRSQDVIKSTIGESSSSKSLFGDDYKLLILDEVDGIHGTND-RGGV 117
Query: 699 RRI--IEKYTENVRFCIICNYLGKIIPALQSRCTRFRFAPLKQDQIVPRLQEIVTTEGVK 526
R I I K ++ I ++ K I +L+++C + + ++ I L++I EG+K
Sbjct: 118 RAIGDIIKKAKHPMILIANDFYSKRIASLKTKCDVLKMSKVRSPSINKLLKQIAINEGIK 177
Query: 525 MSEGGMKALLTLSGGDMRKVLNTLQS 448
+ +K L S GDMR +NT Q+
Sbjct: 178 ANPAALKELAKKSNGDMRSAINTFQA 203
>UniRef50_A7HGU5 Cluster: DNA polymerase III, subunits gamma and
tau; n=3; Cystobacterineae|Rep: DNA polymerase III,
subunits gamma and tau - Anaeromyxobacter sp. Fw109-5
Length = 606
Score = 74.1 bits (174), Expect = 4e-12
Identities = 65/260 (25%), Positives = 123/260 (47%), Gaps = 4/260 (1%)
Frame = -2
Query: 855 VLELNAXDDRGIGIVRGQILSFASTRTIFKAGPKLIILDEADAMTNDAQNALRRIIEKYT 676
V+E++A + G+ VR I+ R + K+ ++DE ++ A NAL + +E+
Sbjct: 90 VVEIDAASNNGVDNVR-DIVEAVKYRPA-RDRYKVFVVDEVHMLSTGAFNALLKTLEEPP 147
Query: 675 ENVRFCIICNYLGKIIPALQSRCTRFRFAPLKQDQIVPRLQEIVTTEGVKMSEGGMKALL 496
E+V+F + + K+ + SRC RF F L QI +L ++ EG++++ G + +
Sbjct: 148 EHVKFVLATTDVHKVPETILSRCQRFDFRRLTLQQIADQLAKVAEAEGMRLAPGALALVA 207
Query: 495 TLSGGDMRKVLNTLQSTWLAYRDVTED-NVYTCVGHPLRADIDSILNWLLNENDFSACFK 319
+ G MR L+ L A D ++ V +G A I I L++ + A
Sbjct: 208 RQAEGGMRDALSLLDQVRAAAGDAPDEAAVAEALGAVDAAAISRICGALVH-REGGALLA 266
Query: 318 SIQDLKIAKGLALSDILAEVHTIIQRVKLPPEVLVSLLIKMSD---AEARLASGSSERVE 148
++ L A+GL + + E+ ++ V + ++ + + + D AE R + +++ +
Sbjct: 267 ELEALH-ARGLEMKRVAEEIVRHLRNV-VVARLVPATPLDLPDGELAEVRAQAAAADPAQ 324
Query: 147 LAALIASFQIARDQVKLDTE 88
L L Q A QVKL +
Sbjct: 325 LTRLFDLAQRAVVQVKLSEQ 344
>UniRef50_Q9WZF2 Cluster: DNA polymerase III, gamma and tau subunit;
n=2; Thermotoga|Rep: DNA polymerase III, gamma and tau
subunit - Thermotoga maritima
Length = 478
Score = 73.7 bits (173), Expect = 6e-12
Identities = 42/138 (30%), Positives = 71/138 (51%)
Frame = -2
Query: 855 VLELNAXDDRGIGIVRGQILSFASTRTIFKAGPKLIILDEADAMTNDAQNALRRIIEKYT 676
V+EL+A +RGI +R +I R + + K+ I+DE +T +A NAL + +E+
Sbjct: 88 VIELDAASNRGIDEIR-RIRDAVGYRPM-EGKYKVYIIDEVHMLTKEAFNALLKTLEEPP 145
Query: 675 ENVRFCIICNYLGKIIPALQSRCTRFRFAPLKQDQIVPRLQEIVTTEGVKMSEGGMKALL 496
+V F + L K+ P + SRC F F + + I RLQE+ EG+++ + +
Sbjct: 146 SHVVFVLATTNLEKVPPTIISRCQVFEFRNIPDELIEKRLQEVAEAEGIEIDREALSFIA 205
Query: 495 TLSGGDMRKVLNTLQSTW 442
+ G +R L L+ W
Sbjct: 206 KRASGGLRDALTMLEQVW 223
>UniRef50_A0GXK7 Cluster: DNA polymerase III, subunits gamma and
tau; n=2; Chloroflexus|Rep: DNA polymerase III, subunits
gamma and tau - Chloroflexus aggregans DSM 9485
Length = 613
Score = 73.7 bits (173), Expect = 6e-12
Identities = 59/242 (24%), Positives = 111/242 (45%), Gaps = 1/242 (0%)
Frame = -2
Query: 855 VLELNAXDDRGIGIVRGQILSFASTRTIFKAGPKLIILDEADAMTNDAQNALRRIIEKYT 676
V+E++A + R +I+ R A K+ I+DEA ++ A NAL + +E+
Sbjct: 91 VIEMDAASHTSVEDAR-EIIERVQFRPSV-ARMKVYIIDEAHMLSTAAFNALLKTLEEPP 148
Query: 675 ENVRFCIICNYLGKIIPALQSRCTRFRFAPLKQDQIVPRLQEIVTTEGVKMSEGGMKALL 496
++ F + + K+ + SRC RF F + ++ I EG+ + EG +A+
Sbjct: 149 DHALFILATTEVHKVPATILSRCQRFTFVRHSVTSMAAHVRRIAAAEGIVLVEGAPEAIA 208
Query: 495 TLSGGDMRKVLNTL-QSTWLAYRDVTEDNVYTCVGHPLRADIDSILNWLLNENDFSACFK 319
+ G MR L L Q +T +V + +G A++D+++ LL+ D +A +
Sbjct: 209 RAATGSMRDALGILEQLASFVEGPITLQHVQSLLGMTAAAEVDALIEALLSA-DLTAALR 267
Query: 318 SIQDLKIAKGLALSDILAEVHTIIQRVKLPPEVLVSLLIKMSDAEARLASGSSERVELAA 139
++ + +G L +V ++ V L L+ + D E ++R E+AA
Sbjct: 268 AVNAV-ANQGADLRQFARDVVERLRAVMLLNATGDRTLLDLGDDEVAQLMQWAQRAEMAA 326
Query: 138 LI 133
L+
Sbjct: 327 LV 328
>UniRef50_A0CIK7 Cluster: Chromosome undetermined scaffold_19, whole
genome shotgun sequence; n=1; Paramecium
tetraurelia|Rep: Chromosome undetermined scaffold_19,
whole genome shotgun sequence - Paramecium tetraurelia
Length = 356
Score = 73.7 bits (173), Expect = 6e-12
Identities = 38/104 (36%), Positives = 59/104 (56%)
Frame = -2
Query: 756 KLIILDEADAMTNDAQNALRRIIEKYTENVRFCIICNYLGKIIPALQSRCTRFRFAPLKQ 577
K++I++E D +T +AQ +LRR +EKY E R +IC L KII ++SRC R Q
Sbjct: 134 KVVIINEVDNLTKEAQASLRRTMEKYIERCRIILICESLAKIINPIRSRCLLIRVPAPDQ 193
Query: 576 DQIVPRLQEIVTTEGVKMSEGGMKALLTLSGGDMRKVLNTLQST 445
Q+ L +I K+S+ + + S G++R+ + LQST
Sbjct: 194 TQVAQILDKISAQYNCKISQQLINKIAIASNGNLREAILYLQST 237
>UniRef50_Q7NAN5 Cluster: DnaX; n=1; Mycoplasma gallisepticum|Rep:
DnaX - Mycoplasma gallisepticum
Length = 624
Score = 73.3 bits (172), Expect = 7e-12
Identities = 61/230 (26%), Positives = 110/230 (47%), Gaps = 3/230 (1%)
Frame = -2
Query: 864 SSMVLELNAXDDRGIGIVRGQILSFASTRTIFKAGPKLIILDEADAMTNDAQNALRRIIE 685
S + EL+A + G+ +R +I+ A K+ ILDEA ++N A NAL + +E
Sbjct: 108 SQDIYELDAATNNGVDEIR-KIID-AINYAPMNLSKKVYILDEAHMLSNGAWNALLKTLE 165
Query: 684 KYTENVRFCIICNYLGKIIPALQSRCTRFRFAPLKQDQIVPRLQEIVTTEGVKMSEGGMK 505
+ ++V F KI + SRC F F L +D +V L+ +V E +K+ + +
Sbjct: 166 EPPKHVVFIFATTEFHKIPLTVVSRCQSFNFKKLDKDDLVDVLKNVVKQEKIKIEDSAID 225
Query: 504 ALLTLSGGDMRKVLNTLQSTWLAY---RDVTEDNVYTCVGHPLRADIDSILNWLLNENDF 334
+ + G R L+ LQ LAY + +T + + G + +I L+N++D
Sbjct: 226 KIADFASGSARDGLSILQQ--LAYDKNKKITVEKINETFG-LINLEIKLEFLELINQHDL 282
Query: 333 SACFKSIQDLKIAKGLALSDILAEVHTIIQRVKLPPEVLVSLLIKMSDAE 184
K + +++ AKG + ++ I+ + + +V S L+K+ D E
Sbjct: 283 EKFVKLLNEIE-AKGTNFVLFIQDLLAILIDLLVYQKVKSSSLLKVLDEE 331
>UniRef50_Q2RMH2 Cluster: DNA polymerase III, subunits gamma and
tau; n=2; Clostridia|Rep: DNA polymerase III, subunits
gamma and tau - Moorella thermoacetica (strain ATCC
39073)
Length = 589
Score = 73.3 bits (172), Expect = 7e-12
Identities = 43/134 (32%), Positives = 67/134 (50%)
Frame = -2
Query: 855 VLELNAXDDRGIGIVRGQILSFASTRTIFKAGPKLIILDEADAMTNDAQNALRRIIEKYT 676
VLE++A +RGI +R I + K+ I+DE +T +A NAL + +E+
Sbjct: 91 VLEMDAASNRGIDEIRNLIEKIPLGPV--EGRYKVYIIDEVHMLTQEAFNALLKTLEEPP 148
Query: 675 ENVRFCIICNYLGKIIPALQSRCTRFRFAPLKQDQIVPRLQEIVTTEGVKMSEGGMKALL 496
+ F + K++P + SRC RF F PL I RLQE+ GV++ G + L
Sbjct: 149 AHAVFILATTEPRKVLPTILSRCQRFDFHPLTVQAIAGRLQEVAAANGVEIEPGALSLLS 208
Query: 495 TLSGGDMRKVLNTL 454
+ G +R L+ L
Sbjct: 209 RKAAGGLRDALSLL 222
>UniRef50_P38251 Cluster: Replication factor C subunit 5; n=12;
Saccharomycetales|Rep: Replication factor C subunit 5 -
Saccharomyces cerevisiae (Baker's yeast)
Length = 354
Score = 73.3 bits (172), Expect = 7e-12
Identities = 36/104 (34%), Positives = 65/104 (62%), Gaps = 1/104 (0%)
Frame = -2
Query: 756 KLIILDEADAMTNDAQNALRRIIEKYTENVRFCIICNYLGKIIPALQSRCTRFRFAPLKQ 577
K +I++EA+++T DAQ ALRR +EKY++N+R ++C+ + II ++SRC R
Sbjct: 136 KCVIINEANSLTKDAQAALRRTMEKYSKNIRLIMVCDSMSPIIAPIKSRCLLIRCPAPSD 195
Query: 576 DQIVPRLQEIVTTEGVKM-SEGGMKALLTLSGGDMRKVLNTLQS 448
+I L ++VT E +++ ++ +K + S G++R L L+S
Sbjct: 196 SEISTILSDVVTNERIQLETKDILKRIAQASNGNLRVSLLMLES 239
>UniRef50_Q9RRS5 Cluster: DNA polymerase III, tau/gamma subunit;
n=3; Deinococcus|Rep: DNA polymerase III, tau/gamma
subunit - Deinococcus radiodurans
Length = 615
Score = 72.9 bits (171), Expect = 1e-11
Identities = 51/169 (30%), Positives = 79/169 (46%)
Frame = -2
Query: 855 VLELNAXDDRGIGIVRGQILSFASTRTIFKAGPKLIILDEADAMTNDAQNALRRIIEKYT 676
V+E++A + + VR L + G K+ ILDEA M+ A NAL + +E+
Sbjct: 87 VMEIDAASNNSVDDVRD--LREKVGLAAMRGGKKIYILDEAHMMSRAAFNALLKTLEEPP 144
Query: 675 ENVRFCIICNYLGKIIPALQSRCTRFRFAPLKQDQIVPRLQEIVTTEGVKMSEGGMKALL 496
E+V F + KIIP + SRC +RF L ++I +L +VT EG + +
Sbjct: 145 EHVIFILATTEPEKIIPTILSRCQHYRFRRLTSEEIAGKLAGLVTLEGASADPDALNLIG 204
Query: 495 TLSGGDMRKVLNTLQSTWLAYRDVTEDNVYTCVGHPLRADIDSILNWLL 349
L+ G MR + L+ A VT V +G P + + + LL
Sbjct: 205 RLADGAMRDGESLLERMLAAGTAVTRPAVEEALGLPPGERVRGVASALL 253
>UniRef50_A7HJR0 Cluster: DNA polymerase III, subunits gamma and
tau; n=1; Fervidobacterium nodosum Rt17-B1|Rep: DNA
polymerase III, subunits gamma and tau -
Fervidobacterium nodosum Rt17-B1
Length = 517
Score = 72.9 bits (171), Expect = 1e-11
Identities = 53/191 (27%), Positives = 93/191 (48%), Gaps = 2/191 (1%)
Frame = -2
Query: 855 VLELNAXDDRGIGIVRGQILSFASTRTIFKAGPKLIILDEADAMTNDAQNALRRIIEKYT 676
V+EL+A +RGI +R T + K K+ I+DE +T +A NAL + +E+
Sbjct: 88 VIELDAASNRGIDEIRKIKEGVNFTPVMGKY--KVYIIDEVHMLTREAFNALLKTLEEPP 145
Query: 675 ENVRFCIICNYLGKIIPALQSRCTRFRFAPLKQDQIVPRLQEIVTTEGVKMSEGGMKALL 496
+++ F + KI P + SRC F + ++ I+ +L+ + EG ++ +K +
Sbjct: 146 QHIVFILATTNPEKIPPTIMSRCHVLEFRNISEENIISKLKSVCEKEGFDVTYEALKKIA 205
Query: 495 TLSGGDMRKVLNTLQSTWLAYR--DVTEDNVYTCVGHPLRADIDSILNWLLNENDFSACF 322
+ G +R L+TL+ + Y +VTE V +G I+ + LN ND
Sbjct: 206 KRAEGGLRDALSTLEQV-IRYTGGEVTEKIVDEALGLISEETIEKFIEATLN-NDRELIE 263
Query: 321 KSIQDLKIAKG 289
K + D+ I +G
Sbjct: 264 KILNDIYIERG 274
>UniRef50_A0LM15 Cluster: DNA polymerase III, subunits gamma and
tau; n=1; Syntrophobacter fumaroxidans MPOB|Rep: DNA
polymerase III, subunits gamma and tau - Syntrophobacter
fumaroxidans (strain DSM 10017 / MPOB)
Length = 602
Score = 72.5 bits (170), Expect = 1e-11
Identities = 55/185 (29%), Positives = 88/185 (47%), Gaps = 1/185 (0%)
Frame = -2
Query: 855 VLELNAXDDRGIGIVRGQILSFASTRTIFKAGPKLIILDEADAMTNDAQNALRRIIEKYT 676
VLE++ +RGI VR ++ R K+ K+ I+DE +T +A NAL + +E+
Sbjct: 90 VLEIDGASNRGIDSVR-ELRETVRYRPA-KSRYKVYIIDEVHMLTTEAFNALLKTLEEPP 147
Query: 675 ENVRFCIICNYLGKIIPALQSRCTRFRFAPLKQDQIVPRLQEIVTTEGVKMSEGGMKALL 496
E+V F KI + SRC RF F + +V L+ I E V +SEG + A+
Sbjct: 148 EHVVFIFATTEPHKIPATILSRCQRFDFRRIPSHMLVDHLRHIAAQEDVALSEGVLYAIA 207
Query: 495 TLSGGDMRKVLNTLQSTWLAYRD-VTEDNVYTCVGHPLRADIDSILNWLLNENDFSACFK 319
+ G MR + L+ RD ++++ V +G R I +L E D C
Sbjct: 208 READGSMRDAQSLLEQMLSFSRDGLSDEEVLDVLGVIDRRSIHRTGTAVL-EGDVRTCLD 266
Query: 318 SIQDL 304
++D+
Sbjct: 267 VVEDI 271
>UniRef50_Q4Q084 Cluster: Replication factor C, subunit 5, putative;
n=4; Trypanosomatidae|Rep: Replication factor C, subunit
5, putative - Leishmania major
Length = 351
Score = 72.5 bits (170), Expect = 1e-11
Identities = 39/111 (35%), Positives = 64/111 (57%), Gaps = 1/111 (0%)
Frame = -2
Query: 756 KLIILDEADAMTNDAQNALRRIIEKYTENVRFCIICNYLGKIIPALQSRCTRFRFAPLKQ 577
K+++L+E D M+ AQ+ALRR +EKY R ++CN ++IP L+SRC R A +
Sbjct: 133 KVVVLNEVDKMSRTAQHALRRTMEKYMNTCRLFLLCNSTSRLIPPLRSRCLGIRVASHSK 192
Query: 576 DQIVPRLQEIVTTEGVKM-SEGGMKALLTLSGGDMRKVLNTLQSTWLAYRD 427
D + +Q + EG + S + +L S G++R+ L L+++ LA D
Sbjct: 193 DNLKLAVQRVCEGEGRPLPSVAFLNSLALRSDGNLRRGLLMLEASALAKVD 243
>UniRef50_Q2JLX3 Cluster: DNA polymerase III, subunits gamma and
tau; n=2; Synechococcus|Rep: DNA polymerase III,
subunits gamma and tau - Synechococcus sp. (strain
JA-2-3B'a(2-13)) (Cyanobacteria bacteriumYellowstone
B-Prime)
Length = 779
Score = 71.7 bits (168), Expect = 2e-11
Identities = 53/212 (25%), Positives = 104/212 (49%), Gaps = 1/212 (0%)
Frame = -2
Query: 855 VLELNAXDDRGIGIVRGQILSFASTRTIFKAGPKLIILDEADAMTNDAQNALRRIIEKYT 676
VLE++A + G+ +R +++ A + + K+ ++DE ++N A NAL + +E+
Sbjct: 94 VLEIDAASNTGVDNIR-ELIERAQFAPV-NSRYKVYVIDECHMLSNAAFNALLKTLEEPP 151
Query: 675 ENVRFCIICNYLGKIIPALQSRCTRFRFAPLKQDQIVPRLQEIVTTEGVKMSEGGMKALL 496
V F + +++P + SRC RF F + D +V L +I EG+ ++ ++ +
Sbjct: 152 PRVVFVLATTDPQRVLPTIVSRCQRFDFRRIPLDDMVAHLGKIAAQEGIPITPEALQLVA 211
Query: 495 TLSGGDMRKVLNTLQSTWLAYRDVTEDNVYTCVGHPLRADIDSILNWLLNENDFSACFKS 316
LS G +R L L +T + V+ VG + ++++ LL ++ + ++
Sbjct: 212 QLSQGGLRDAERLLDQLSLLEGSITPEAVWDLVGGIPEQQLLALMDALLAQDVQAVLSQT 271
Query: 315 IQDLKIAK-GLALSDILAEVHTIIQRVKLPPE 223
Q L+ K LAL L ++ + VK P+
Sbjct: 272 RQLLERGKEPLALLQNLVALYRDLLLVKTAPQ 303
>UniRef50_Q4A6Z5 Cluster: DNA polymerase III gamma and tau subunit;
n=1; Mycoplasma synoviae 53|Rep: DNA polymerase III
gamma and tau subunit - Mycoplasma synoviae (strain 53)
Length = 609
Score = 71.3 bits (167), Expect = 3e-11
Identities = 50/194 (25%), Positives = 93/194 (47%), Gaps = 1/194 (0%)
Frame = -2
Query: 876 PQQFSSMVLELNAXDDRGIGIVRGQILSFASTRTIFKAGPKLIILDEADAMTNDAQNALR 697
P Q S ++E++A + G+ +R L + F++ K+ I+DE ++ A NAL
Sbjct: 78 PNQNSGDIIEMDAASNTGVDEIRN--LKENVDQLPFESKYKIYIIDEVHMLSKSAFNALL 135
Query: 696 RIIEKYTENVRFCIICNYLGKIIPALQSRCTRFRFAPLKQDQIVPRLQEIVTTEGVKMSE 517
+ +E+ V F + + K+ + SR F F + + QIV +L+ I+ E + +
Sbjct: 136 KTLEEPPSYVIFILATTDVQKVPITILSRVQSFNFRRISEKQIVAQLENILNKENISFEK 195
Query: 516 GGMKALLTLSGGDMRKVLNTL-QSTWLAYRDVTEDNVYTCVGHPLRADIDSILNWLLNEN 340
+ + LS G +R L Q + ++T+++V G +I +LN L ++N
Sbjct: 196 EALMLIAQLSSGGLRDALTIAEQISNFENNNITKESVRKNFGIASNDEIIQVLNDLYSKN 255
Query: 339 DFSACFKSIQDLKI 298
S K + DLK+
Sbjct: 256 -ISDVLKKLNDLKL 268
>UniRef50_Q8G6Y0 Cluster: DNA polymerase III subunit gamma/tau; n=5;
Bifidobacterium|Rep: DNA polymerase III subunit
gamma/tau - Bifidobacterium longum
Length = 970
Score = 70.1 bits (164), Expect = 7e-11
Identities = 61/231 (26%), Positives = 106/231 (45%), Gaps = 7/231 (3%)
Frame = -2
Query: 855 VLELNAXDDRGIGIVRG--QILSFASTRTIFKAGPKLIILDEADAMTNDAQNALRRIIEK 682
V+E++A G+ R + FA R +K + ILDEA +T NAL +I+E+
Sbjct: 91 VVEIDAASHNGVDDARELRERAGFAPARDRYK----IFILDEAHMVTQQGFNALLKIVEE 146
Query: 681 YTENVRFCIICNYLGKIIPALQSRCTRFRFAPLKQDQIVPRLQEIVTTEGVKMSEGGMKA 502
E+V F K+I ++SR + F + Q+ + P L+ I EG+K G +K
Sbjct: 147 PPEHVMFIFATTEPDKVIGTIRSRTHHYPFRLVPQEVMGPYLETICDKEGIKPEPGVLKL 206
Query: 501 LLTLSGGDMRKVLNTLQSTWLAYRD--VTEDNVYTCVGHPLRADIDSILNWLLNENDFSA 328
+ GG MR L+ L + + +T D +G A I ++ +++ N A
Sbjct: 207 AMRAGGGSMRDTLSVLDQLMVGSVEGVITHDAAVALLGFTPEALIGEAVDAVIDHNG-EA 265
Query: 327 CFKSIQDLKIA---KGLALSDILAEVHTIIQRVKLPPEVLVSLLIKMSDAE 184
+ IQ + + + D+LA V ++ + L + S+L ++AE
Sbjct: 266 LYGVIQKVVVGGFDPRRFVEDLLARVRDLLV-LTLAGDRAESVLSDTAEAE 315
>UniRef50_Q7P6U1 Cluster: DNA polymerase III subunit gamma/tau; n=3;
Fusobacterium nucleatum|Rep: DNA polymerase III subunit
gamma/tau - Fusobacterium nucleatum subsp. vincentii
ATCC 49256
Length = 490
Score = 70.1 bits (164), Expect = 7e-11
Identities = 49/181 (27%), Positives = 89/181 (49%), Gaps = 2/181 (1%)
Frame = -2
Query: 870 QFSSMVLELNAXDDRGIGIVRGQILSFASTRTIFKAGPKLIILDEADAMTNDAQNALRRI 691
+FS ++ E++A +R I +R L + K+ I+DEA +T +A NAL +
Sbjct: 92 RFSDLI-EIDAASNRSIDEIRS--LKEKINYQPVEGLKKVYIIDEAHMLTKEAFNALLKT 148
Query: 690 IEKYTENVRFCIICNYLGKIIPALQSRCTRFRFAPLKQDQIVPRLQEIVTTEGVKMSEGG 511
+E+ +V F + L KI+P + SRC R+ F PL ++ L+ I+ E + M++
Sbjct: 149 LEEPPAHVMFILATTELEKILPTIISRCQRYDFKPLDLKEMKAGLEHILKEENLSMTDDV 208
Query: 510 MKALLTLSGGDMRKVLNTLQSTWLAY--RDVTEDNVYTCVGHPLRADIDSILNWLLNEND 337
+ S G MR ++ L+ + +++ +G + I LN +LNEN+
Sbjct: 209 YSVIYENSSGSMRDSISILERLIVTANGKEIDLKIAEDTLGITPSSRIKIFLNKILNENE 268
Query: 336 F 334
+
Sbjct: 269 Y 269
>UniRef50_Q4HGU7 Cluster: DNA polymerase III gamma and tau subunits;
n=3; Campylobacter|Rep: DNA polymerase III gamma and tau
subunits - Campylobacter coli RM2228
Length = 518
Score = 69.7 bits (163), Expect = 9e-11
Identities = 48/186 (25%), Positives = 89/186 (47%), Gaps = 1/186 (0%)
Frame = -2
Query: 855 VLELNAXDDRGIGIVRGQILSFASTRTIFKAGPKLIILDEADAMTNDAQNALRRIIEKYT 676
++E++A +RG+ ++ I T ++ + K+ I+DE +T A NAL + +E+
Sbjct: 89 IIEMDAASNRGLEDIQALIEQTKYTPSMARF--KIFIIDEVHMLTPQAANALLKTLEEPP 146
Query: 675 ENVRFCIICNYLGKIIPALQSRCTRFRFAPLKQDQIVPRLQEIVTTEGVKMSEGGMKALL 496
V+F + K+ + SR FRF + Q++I+ L+EI+ E VK E +K +
Sbjct: 147 SYVKFILATTDPLKLPATVLSRTQHFRFKQIPQNEILNHLKEILNKENVKFEEEALKFVA 206
Query: 495 TLSGGDMRKVLNTL-QSTWLAYRDVTEDNVYTCVGHPLRADIDSILNWLLNENDFSACFK 319
G +R L L Q+ D++ + +G A I + +L +N F
Sbjct: 207 RSGNGSLRDTLTLLDQAIIFCQNDISTSKITDMLGFLDPAKIKEFYHAILTKNK-DRVFD 265
Query: 318 SIQDLK 301
+++LK
Sbjct: 266 FLEELK 271
>UniRef50_A6LMU3 Cluster: DNA polymerase III, subunits gamma and
tau; n=1; Thermosipho melanesiensis BI429|Rep: DNA
polymerase III, subunits gamma and tau - Thermosipho
melanesiensis BI429
Length = 460
Score = 69.7 bits (163), Expect = 9e-11
Identities = 54/185 (29%), Positives = 90/185 (48%), Gaps = 1/185 (0%)
Frame = -2
Query: 855 VLELNAXDDRGIGIVRGQILSFASTRTIFKAGPKLIILDEADAMTNDAQNALRRIIEKYT 676
VLEL+A +RGI +R +I + T + K+ I+DEA +T +A NAL + +E+
Sbjct: 88 VLELDAASNRGIDEIR-KIRETVNYHTA-QGKYKVYIIDEAHMLTKEAFNALLKTLEEPP 145
Query: 675 ENVRFCIICNYLGKIIPALQSRCTRFRFAPLKQDQIVPRLQEIVTTEGVKMSEGGMKALL 496
NV F + KI + SRC F + I+ RL+ + EG+K+S + +
Sbjct: 146 SNVVFILATTNPEKIPQTIISRCQVIDFKNISNKDIIKRLEFVCENEGIKISHEAIVEIS 205
Query: 495 TLSGGDMRKVLNTLQSTW-LAYRDVTEDNVYTCVGHPLRADIDSILNWLLNENDFSACFK 319
+ G +R L L+ A +D+ ++V +G I+ +L L N ND + K
Sbjct: 206 KRANGGLRDALTILEQVINSAGKDIKIEDVRETLGLIPDTIIEKLLENLEN-NDIKSTLK 264
Query: 318 SIQDL 304
I ++
Sbjct: 265 LIDEV 269
>UniRef50_A6CH16 Cluster: DNA polymerase III gamma and tau subunits;
n=1; Planctomyces maris DSM 8797|Rep: DNA polymerase III
gamma and tau subunits - Planctomyces maris DSM 8797
Length = 484
Score = 68.9 bits (161), Expect = 2e-10
Identities = 38/128 (29%), Positives = 72/128 (56%)
Frame = -2
Query: 855 VLELNAXDDRGIGIVRGQILSFASTRTIFKAGPKLIILDEADAMTNDAQNALRRIIEKYT 676
VLE++ +RGI +R + + + R++ ++ K+ I+DE +T +A NAL + +E+
Sbjct: 95 VLEIDGASNRGIDDIRS-LRANVNVRSM-RSKYKIYIIDEVHMLTKEAFNALLKTLEEPP 152
Query: 675 ENVRFCIICNYLGKIIPALQSRCTRFRFAPLKQDQIVPRLQEIVTTEGVKMSEGGMKALL 496
NV+F K+ + SRC RF F ++++ I RL++I E V +++ ++ +
Sbjct: 153 PNVKFIFCTTEPNKLPDTILSRCQRFDFGYIEENSICDRLKQIAEAEQVSVADDAIQLVA 212
Query: 495 TLSGGDMR 472
+GG MR
Sbjct: 213 RRAGGSMR 220
>UniRef50_Q1Q394 Cluster: Similar to DNA polymerase III subunit
gamma/tau; n=1; Candidatus Kuenenia stuttgartiensis|Rep:
Similar to DNA polymerase III subunit gamma/tau -
Candidatus Kuenenia stuttgartiensis
Length = 558
Score = 68.5 bits (160), Expect = 2e-10
Identities = 50/187 (26%), Positives = 89/187 (47%), Gaps = 3/187 (1%)
Frame = -2
Query: 855 VLELNAXDDRGIGIVRG--QILSFASTRTIFKAGPKLIILDEADAMTNDAQNALRRIIEK 682
VLE++ +RGI +R Q + FA +R ++ + I+DE +T +A NAL + +E+
Sbjct: 90 VLEIDGASNRGIDEIRNIRQNVGFAPSRARYR----IYIIDEVHMLTREAFNALLKTLEE 145
Query: 681 YTENVRFCIICNYLGKIIPALQSRCTRFRFAPLKQDQIVPRLQEIVTTEGVKMSEGGMKA 502
+V+F ++ +QSRC RF F + + I L EI TEG ++ +
Sbjct: 146 PPSHVKFIFATTAANRLPETVQSRCQRFDFKNISVNDIEKHLLEICKTEGKQIESAALHT 205
Query: 501 LLTLSGGDMRKVLNTLQSTWLAYRD-VTEDNVYTCVGHPLRADIDSILNWLLNENDFSAC 325
+ + G +R + L + D VT +V +G+ I S+ +N+ D S
Sbjct: 206 IAKYAKGGLRDSQSVLDQLFSFCDDNVTSADVNYVLGYIDDDKIYSMFECFVNK-DTSGA 264
Query: 324 FKSIQDL 304
+ + D+
Sbjct: 265 LRIVDDI 271
>UniRef50_Q03ZG9 Cluster: DNA polymerase III, gamma/tau subunit;
n=1; Leuconostoc mesenteroides subsp. mesenteroides ATCC
8293|Rep: DNA polymerase III, gamma/tau subunit -
Leuconostoc mesenteroides subsp. mesenteroides (strain
ATCC 8293 /NCDO 523)
Length = 575
Score = 68.5 bits (160), Expect = 2e-10
Identities = 55/239 (23%), Positives = 111/239 (46%), Gaps = 3/239 (1%)
Frame = -2
Query: 855 VLELNAXDDRGIGIVRGQILSFASTRTIFKAGPKLIILDEADAMTNDAQNALRRIIEKYT 676
++E++A + G+ +R I A+ I ++ K+ I+DE +++ A NAL + +E+
Sbjct: 79 IIEIDAASNNGVDEIRN-IRDGANYAPI-ESEYKIYIIDEVHMLSSGAFNALLKTLEEPP 136
Query: 675 ENVRFCIICNYLGKIIPALQSRCTRFRFAPLKQDQIVPRLQEIVTTEGVKMSEGGMKALL 496
NV+F + KI + SR RF F + D I R+ EI+ EG+ + + +
Sbjct: 137 ANVKFILATTEPQKIPATILSRTQRFEFKRIDNDTIQARMAEILQKEGISFDDDALHIIA 196
Query: 495 TLSGGDMRKVLNTLQSTWLAYRD-VTEDNVYTCVGHPLRADIDSILNWLLNENDFSACFK 319
++ G MR L+ L D VT +N G + + + L + N D + +
Sbjct: 197 NVAEGGMRDALSILDQVLAFGADHVTLENALQVTGSTTASQLVTYLQQVSN-YDTESALQ 255
Query: 318 SIQDLKIAKGLALSDILAEVHTIIQRVKLPPEV--LVSLLIKMSDAEARLASGSSERVE 148
++ D+ + +G +A++ +++ V L L+ ++D +A + R++
Sbjct: 256 TLHDI-LLEGKDAVRFVADLLGVLRDVMLAEVAPNLIKTTAPLADLKALTIKLGTSRIQ 313
>UniRef50_A6EX05 Cluster: DNA polymerase III subunits gamma and tau;
n=1; Marinobacter algicola DG893|Rep: DNA polymerase III
subunits gamma and tau - Marinobacter algicola DG893
Length = 654
Score = 68.5 bits (160), Expect = 2e-10
Identities = 60/255 (23%), Positives = 121/255 (47%), Gaps = 8/255 (3%)
Frame = -2
Query: 855 VLELNAXDDRGIGIVRGQI--LSFASTRTIFKAGPKLIILDEADAMTNDAQNALRRIIEK 682
++E++A G+ +R + ++ TR FK + ++DE +TN + NA + +E+
Sbjct: 102 LIEIDAASRTGVDDMRELTDNVQYSPTRGRFK----VYLIDEVHMLTNQSFNAFLKTLEE 157
Query: 681 YTENVRFCIICNYLGKIIPALQSRCTRFRFAPLKQDQIVPRLQEIVTTEGVKMSEGGMKA 502
E+V+F + K+ + SRC +F + + I L+ ++T EG+ E +
Sbjct: 158 PPEHVKFLLATTDPQKLPVTVLSRCLQFNLKRMTPEHIAGHLRYVLTQEGIPFEEPALWL 217
Query: 501 LLTLSGGDMRKVLN-TLQSTWLAYRDVTEDNVYTCVGHPLRADIDSILNWLLNENDFSAC 325
L + G MR L+ T Q+ + ++ +V +G ++DI++++N L+ E+D A
Sbjct: 218 LARAADGSMRDALSLTDQAIAFGNQTLSGSDVSNMLGTIDQSDIENLVNALV-EDDGPAL 276
Query: 324 FKS---IQDLKIAKGLALSDILAEVHTIIQRVKLPPEVLVSL--LIKMSDAEARLASGSS 160
I D + L+D+L+ H + +P V +L ++ RL++ +
Sbjct: 277 LSEINRISDFAPDYSVILADLLSLFHRVTMEQVVPGSVDNALGDAAQVESLARRLSAEDA 336
Query: 159 ERVELAALIASFQIA 115
+ AAL+ +A
Sbjct: 337 QLFYQAALMGRKDLA 351
>UniRef50_A1W8D6 Cluster: DNA polymerase III, subunits gamma and
tau; n=13; cellular organisms|Rep: DNA polymerase III,
subunits gamma and tau - Acidovorax sp. (strain JS42)
Length = 679
Score = 68.5 bits (160), Expect = 2e-10
Identities = 54/225 (24%), Positives = 109/225 (48%), Gaps = 2/225 (0%)
Frame = -2
Query: 849 ELNAXDDRGIGIVRGQILSFASTRTIFKAGPKLIILDEADAMTNDAQNALRRIIEKYTEN 670
EL+A +RG+ V+G +L A + + + K+ ++DE +TN A NA+ + +E+ E
Sbjct: 97 ELDAASNRGVDEVQG-LLEQAVYKPV-QGRFKVFMIDEVHMLTNTAFNAMLKTLEEPPEY 154
Query: 669 VRFCIICNYLGKIIPALQSRCTRFRFAPLKQDQIVPRLQEIVTTEGVKMSEGGMKALLTL 490
++F + K+ + SRC +F P+ + ++ L ++ E V ++ L
Sbjct: 155 LKFVLATTDPQKVPVTVLSRCLQFNLRPMAPETVLEHLTRVLAAENVPAEPQALRLLARA 214
Query: 489 SGGDMRKVLN-TLQSTWLAYRDVTEDNVYTCVGHPLRADIDSILNWLLNENDFSACFKSI 313
+ G MR L+ T Q+ + E V +G R+ + +++ L + D ++
Sbjct: 215 ARGSMRDALSLTDQAIAFGSGQLQEAAVRQMLGSVDRSHVFRLID-ALAQGDGRTVVETA 273
Query: 312 QDLKIAKGLALSDILAEVHTIIQRVKLPPEV-LVSLLIKMSDAEA 181
L+I GL+ + L ++ ++QR+ + V ++ + SD EA
Sbjct: 274 DTLRI-NGLSAASTLEDMSAVLQRMAVLQAVPQMAAAVDASDPEA 317
>UniRef50_A5FRM9 Cluster: DNA polymerase III, subunits gamma and
tau; n=3; Dehalococcoides|Rep: DNA polymerase III,
subunits gamma and tau - Dehalococcoides sp. BAV1
Length = 570
Score = 68.1 bits (159), Expect = 3e-10
Identities = 52/213 (24%), Positives = 100/213 (46%), Gaps = 2/213 (0%)
Frame = -2
Query: 864 SSM-VLELNAXDDRGIGIVRGQILSFASTRTIFKAGPKLIILDEADAMTNDAQNALRRII 688
SSM ++E++A + G+ +R + ++ A K+ I+DE ++N A NAL + +
Sbjct: 90 SSMDIIEIDAASNTGVDDIRELKEKVQYSPSL--ANYKVYIIDEVHMLSNSASNALLKTL 147
Query: 687 EKYTENVRFCIICNYLGKIIPALQSRCTRFRFAPLKQDQIVPRLQEIVTTEGVKMSEGGM 508
E+ V F + + K++P + SRC RF F + + +L +I EG+ + +
Sbjct: 148 EEPPPRVIFILATTEIHKVLPTIMSRCQRFDFHRVSLVDMTRKLGKISLAEGINVEPEAL 207
Query: 507 KALLTLSGGDMRKVLNTLQSTWLAY-RDVTEDNVYTCVGHPLRADIDSILNWLLNENDFS 331
K + +GG R N LQ Y +++ V +G I ++ +L + D
Sbjct: 208 KLIARSAGGSFRDGENLLQQIATTYGAEISLSQVQAALGISGDERIKALAENIL-KKDIK 266
Query: 330 ACFKSIQDLKIAKGLALSDILAEVHTIIQRVKL 232
K++ + +A GL L E+ ++++ L
Sbjct: 267 NGLKTLNAV-LADGLDLKQFRRELLDYLRQIML 298
>UniRef50_Q2NH88 Cluster: Replication factor C large subunit; n=1;
Methanosphaera stadtmanae DSM 3091|Rep: Replication
factor C large subunit - Methanosphaera stadtmanae
(strain DSM 3091)
Length = 534
Score = 68.1 bits (159), Expect = 3e-10
Identities = 38/158 (24%), Positives = 81/158 (51%), Gaps = 3/158 (1%)
Frame = -2
Query: 873 QQFSSMVLELNAXDDRGIGIVRGQILSFASTRTIFKAGPKLIILDEADAMTNDAQNALRR 694
+++ S +E+NA D R I++ I A TR++F +G KL+I+DE D ++ + R
Sbjct: 60 KEYFSETIEVNASDKRSYDIIKSSIGEAAQTRSLFHSGYKLLIMDEVDGISGRDDSGGAR 119
Query: 693 IIEKYTENVRFCIIC---NYLGKIIPALQSRCTRFRFAPLKQDQIVPRLQEIVTTEGVKM 523
+ + +N + II + K + +++ +C +F + + I +L+ I E ++
Sbjct: 120 AVNETIKNSKQPIILMANDAYSKRLTSIKPKCQGIKFTKVHTNSINAQLKRICAREDIEY 179
Query: 522 SEGGMKALLTLSGGDMRKVLNTLQSTWLAYRDVTEDNV 409
+ L S GD+R + +L++ + +T+D++
Sbjct: 180 DSEALYTLSKESNGDLRSAITSLEAIVDNDKKITKDSL 217
>UniRef50_Q8YMK1 Cluster: DNA polymerase III gamma and tau subunits;
n=3; Nostocaceae|Rep: DNA polymerase III gamma and tau
subunits - Anabaena sp. (strain PCC 7120)
Length = 655
Score = 67.7 bits (158), Expect = 4e-10
Identities = 43/176 (24%), Positives = 88/176 (50%)
Frame = -2
Query: 867 FSSMVLELNAXDDRGIGIVRGQILSFASTRTIFKAGPKLIILDEADAMTNDAQNALRRII 688
+S V+E++A + G+ +R +++ A + + K+ ++DE +++ A NAL + +
Sbjct: 88 YSLDVIEIDAASNTGVDNIR-ELIEKAQFAPV-QCRYKVYVIDECHMLSSAAFNALLKTL 145
Query: 687 EKYTENVRFCIICNYLGKIIPALQSRCTRFRFAPLKQDQIVPRLQEIVTTEGVKMSEGGM 508
E+ +V F + +++P + SRC RF F ++ + +V L I + E + +S +
Sbjct: 146 EEPPRHVVFVLATTDPQRVLPTIISRCQRFDFRRIQLEAMVKHLSAIASKENINISLEAV 205
Query: 507 KALLTLSGGDMRKVLNTLQSTWLAYRDVTEDNVYTCVGHPLRADIDSILNWLLNEN 340
+ LS G +R + L L +VT + V+ VG D+ +L + +N
Sbjct: 206 TLVAQLSQGGLRDAESLLDQLALLPNEVTPEQVWDLVGSVSEQDLLVLLAAIAQDN 261
>UniRef50_A3DHB9 Cluster: DNA polymerase III, subunits gamma and
tau; n=1; Clostridium thermocellum ATCC 27405|Rep: DNA
polymerase III, subunits gamma and tau - Clostridium
thermocellum (strain ATCC 27405 / DSM 1237)
Length = 547
Score = 67.7 bits (158), Expect = 4e-10
Identities = 50/200 (25%), Positives = 98/200 (49%), Gaps = 1/200 (0%)
Frame = -2
Query: 855 VLELNAXDDRGIGIVRGQILSFASTRTIFKAGPKLIILDEADAMTNDAQNALRRIIEKYT 676
V+E++A + + +R +L T KA K+ I+DE ++ A NAL + +E+
Sbjct: 90 VIEIDAASNNSVDDIR--VLRDEVIYTPSKARYKVYIIDEVHMLSTGAFNALLKTLEEPP 147
Query: 675 ENVRFCIICNYLGKIIPALQSRCTRFRFAPLKQDQIVPRLQEIVTTEGVKMSEGGMKALL 496
+V F + K+ + SRC RF F + D IV R++ I GV++ K +
Sbjct: 148 AHVIFILATTEPHKLPATILSRCQRFDFRRIPVDSIVKRIEYIAKESGVEIRREASKLIA 207
Query: 495 TLSGGDMRKVLNTL-QSTWLAYRDVTEDNVYTCVGHPLRADIDSILNWLLNENDFSACFK 319
LS G +R ++ L Q L +++T ++V + VG I +++ + N+ +
Sbjct: 208 KLSDGALRDAISILDQCISLGSKELTYEDVLSVVGLVTDTFIAEVVDAIKNK-EVGRVLN 266
Query: 318 SIQDLKIAKGLALSDILAEV 259
++ +L + +G + ++E+
Sbjct: 267 AVDEL-VMEGKNIGQFVSEL 285
>UniRef50_A1AWB5 Cluster: DNA polymerase III, subunits gamma and
tau; n=2; sulfur-oxidizing symbionts|Rep: DNA polymerase
III, subunits gamma and tau - Ruthia magnifica subsp.
Calyptogena magnifica
Length = 529
Score = 67.7 bits (158), Expect = 4e-10
Identities = 53/209 (25%), Positives = 100/209 (47%), Gaps = 1/209 (0%)
Frame = -2
Query: 855 VLELNAXDDRGIGIVRGQILSFASTRTIFKAGPKLIILDEADAMTNDAQNALRRIIEKYT 676
++EL+A G+ +R IL A K K+ ++DE ++ ++ NAL + +E+
Sbjct: 92 LIELDAASHTGVDNMR-DILENAQYMPS-KNRYKIYLIDEVHMLSKNSFNALLKTLEEPP 149
Query: 675 ENVRFCIICNYLGKIIPALQSRCTRFRFAPLKQDQIVPRLQEIVTTEGVKMSEGGMKALL 496
E+V+F ++ K+ + SRC +F L D+I+ +L+ I+ E + E + +
Sbjct: 150 EHVKFLLVTTDPQKLPVTVLSRCLQFTLQQLTHDEILEQLKFIMNAEVLSYEESALGQIA 209
Query: 495 TLSGGDMRKVLNTL-QSTWLAYRDVTEDNVYTCVGHPLRADIDSILNWLLNENDFSACFK 319
G MR L+ L QS VT ++ +G DI + L ++ D A
Sbjct: 210 DFGNGSMRDALSLLDQSISYGKGTVTNADIKAMLGLVHHDDIIKLTTHLFSQ-DAKAVID 268
Query: 318 SIQDLKIAKGLALSDILAEVHTIIQRVKL 232
I+DL +G LS+ L ++ ++ ++ +
Sbjct: 269 FIKDLS-RRGENLSNALKDLSSLFHKISI 296
>UniRef50_O94697 Cluster: Replication factor C subunit 5; n=2;
Ascomycota|Rep: Replication factor C subunit 5 -
Schizosaccharomyces pombe (Fission yeast)
Length = 358
Score = 67.3 bits (157), Expect = 5e-10
Identities = 32/103 (31%), Positives = 61/103 (59%)
Frame = -2
Query: 756 KLIILDEADAMTNDAQNALRRIIEKYTENVRFCIICNYLGKIIPALQSRCTRFRFAPLKQ 577
K+++++ AD +T DAQ ALRR +EKY+ N+R +I N KII ++SR R A
Sbjct: 129 KVVVINVADELTRDAQAALRRTMEKYSNNIRLILIANSTSKIIEPIRSRTLMVRVAAPTP 188
Query: 576 DQIVPRLQEIVTTEGVKMSEGGMKALLTLSGGDMRKVLNTLQS 448
++I+ + +I+T +G++ + + + ++RK + L++
Sbjct: 189 EEIILVMSKILTAQGLEAPDSLLNNIANNCDRNLRKAILLLET 231
>UniRef50_Q67TJ5 Cluster: DNA polymerase III gamma and tau subunits;
n=1; Symbiobacterium thermophilum|Rep: DNA polymerase
III gamma and tau subunits - Symbiobacterium
thermophilum
Length = 570
Score = 66.9 bits (156), Expect = 6e-10
Identities = 52/184 (28%), Positives = 87/184 (47%), Gaps = 16/184 (8%)
Frame = -2
Query: 855 VLELNAXDDRGIGIVRG--QILSFASTRTIFKAGPKLIILDEADAMTNDAQNALRRIIEK 682
++E++A +RGI +R ++FA +K + I+DE +T A NAL + +E+
Sbjct: 90 LIEIDAASNRGIDEIRDLRDKVNFAPVELKYK----VYIIDEVHMLTEPAFNALLKTLEE 145
Query: 681 YTENVRFCIICNYLGKIIPALQSRCTRFRFAPLKQDQIVPRLQEIVTTEGVKMSEGGMKA 502
+V F + K+ + SRC F + L D+IV RL+E+ +G+K S + A
Sbjct: 146 PPAHVLFVLATTEKQKLPITILSRCQAFDYRRLSADEIVARLREVCGKQGLKASPEALAA 205
Query: 501 LLTLSGGDMRKVLNTLQS--TWLAYRDVTEDNVYTCV------------GHPLRADIDSI 364
+ + G MR L+ L + A ++T D + GH LR D+ +
Sbjct: 206 IARHADGGMRDALSLLDQVMAYAAEGEITLDMTLAVLGTAPLDQFLALDGHLLRGDVGAA 265
Query: 363 LNWL 352
L WL
Sbjct: 266 LLWL 269
>UniRef50_Q1FKE1 Cluster: DNA polymerase III, subunits gamma and
tau; n=4; Clostridiales|Rep: DNA polymerase III,
subunits gamma and tau - Clostridium phytofermentans
ISDg
Length = 522
Score = 66.9 bits (156), Expect = 6e-10
Identities = 61/267 (22%), Positives = 122/267 (45%), Gaps = 6/267 (2%)
Frame = -2
Query: 870 QFSSMVLELNAXDDRGIGIVRGQILSFASTRTIFKAGPKLIILDEADAMTNDAQNALRRI 691
Q S V+E++A + G+ +R + + T + K+ I+DE ++ A NAL +
Sbjct: 85 QSSMNVIEIDAASNNGVDNIREIVEEVKYSPT--EGNYKVYIIDEVHMLSAGAFNALLKT 142
Query: 690 IEKYTENVRFCIICNYLGKIIPALQSRCTRFRFAPLKQDQIVPRLQEIVTTEGVKMSEGG 511
+E+ V F + + KI + SRC R+ F + D+I RL+ I EG++ E
Sbjct: 143 LEEPPSYVIFILATTEVHKIPITILSRCQRYDFRRVTIDEITKRLRVITEKEGIEAEEKA 202
Query: 510 MKALLTLSGGDMRKVLNTLQSTWLAY--RDVTEDNVYTCVGHPLRADIDSILNWLLNEND 337
++ + + G R L+ L Y + +T DNV +G + ++ + L + +
Sbjct: 203 LRYVARAADGSFRDALSLLDQCIAFYFGQSLTYDNVLDALG-TVDIEVFARLLRYIRKGS 261
Query: 336 FSACFKSIQDLKIAKGLALSDILAEVHTIIQRVKL-PPEVLVSLLIKMSDAEARLASGSS 160
+ C +++L I +G L+ + ++ + L + +++MS + +L +
Sbjct: 262 VTDCVAILEEL-IIQGRELTQFTIDFTWYLRNLLLAKTSEDMEEILEMSSDQLQLLKQEA 320
Query: 159 ERVELAALIASFQI---ARDQVKLDTE 88
+ + LI +I +QVK T+
Sbjct: 321 QSCDTELLIRFIRIFSELSNQVKYATQ 347
>UniRef50_Q8DT16 Cluster: DNA polymerase III, gamma/tau subunit;
n=44; Streptococcus|Rep: DNA polymerase III, gamma/tau
subunit - Streptococcus mutans
Length = 558
Score = 66.5 bits (155), Expect = 8e-10
Identities = 42/134 (31%), Positives = 67/134 (50%)
Frame = -2
Query: 855 VLELNAXDDRGIGIVRGQILSFASTRTIFKAGPKLIILDEADAMTNDAQNALRRIIEKYT 676
V+E++A + G+ +R + ST +A K+ I+DE ++ A NAL + +E+ T
Sbjct: 89 VIEIDAASNNGVDEIRE--IRDKSTYAPSRATYKVYIIDEVHMLSTGAFNALLKTLEEPT 146
Query: 675 ENVRFCIICNYLGKIIPALQSRCTRFRFAPLKQDQIVPRLQEIVTTEGVKMSEGGMKALL 496
ENV F + L KI + SR RF F +K I L +I+ EG+ E + +
Sbjct: 147 ENVVFILATTELHKIPATILSRVQRFEFKAIKTKAIKEHLADILKKEGLSFDEEALSLIA 206
Query: 495 TLSGGDMRKVLNTL 454
+ G MR L+ L
Sbjct: 207 RRAEGGMRDALSIL 220
>UniRef50_Q82X62 Cluster: DnaX; DNA polymerase III (Subunits tau and
gamma) protein; n=3; Betaproteobacteria|Rep: DnaX; DNA
polymerase III (Subunits tau and gamma) protein -
Nitrosomonas europaea
Length = 525
Score = 66.5 bits (155), Expect = 8e-10
Identities = 52/212 (24%), Positives = 100/212 (47%), Gaps = 3/212 (1%)
Frame = -2
Query: 855 VLELNAXDDRGIGIVRGQILSFASTRTIFKAGPKLIILDEADAMTNDAQNALRRIIEKYT 676
++EL+A + + +R ++L A + A K+ ++DE ++ A NA+ + +E+
Sbjct: 91 LIELDAASNTQVDAMR-ELLDNAQYAPV-AARYKVYLIDEVHMLSRSAFNAMLKTLEEPP 148
Query: 675 ENVRFCIICNYLGKIIPALQSRCTRFRFAPLKQDQIVPRLQEIVTTEGVKMSEGGMKALL 496
E+V+F + KI + SRC +F + IV RL EI++ EG+ G++ L
Sbjct: 149 EHVKFILATTDPQKIPVTVLSRCLQFNLKQIPPSLIVERLTEILSMEGIPADAAGLRLLA 208
Query: 495 TLSGGDMRKVLNTL-QSTWLAYRDVTEDNVYTCVGHPLRADIDSILNWLLNENDFS--AC 325
+ G +R L+ L Q+ V E + +G + I ++L L +N + A
Sbjct: 209 QAAKGSLRDALSLLDQAIAFGNSVVNESDTRAMLGVLDQDHIFALLEALAEQNGAAIFAI 268
Query: 324 FKSIQDLKIAKGLALSDILAEVHTIIQRVKLP 229
++ ++ AL D+ A +H + +P
Sbjct: 269 ADQLEAASVSFDQALQDLAALLHRLATAQVIP 300
>UniRef50_Q1GKB7 Cluster: DNA polymerase III subunits gamma and tau;
n=27; Bacteria|Rep: DNA polymerase III subunits gamma
and tau - Silicibacter sp. (strain TM1040)
Length = 608
Score = 66.5 bits (155), Expect = 8e-10
Identities = 51/213 (23%), Positives = 104/213 (48%), Gaps = 2/213 (0%)
Frame = -2
Query: 855 VLELNAXDDRGIGIVRGQILSFASTRTIFKAGPKLIILDEADAMTNDAQNALRRIIEKYT 676
V+E++A G+G +R +I+ + R A K+ I+DE ++ A NAL + +E+
Sbjct: 109 VMEMDAASRTGVGDIR-EIIDSVAYRAA-SARYKIYIIDEVHMLSTSAFNALLKTLEEPP 166
Query: 675 ENVRFCIICNYLGKIIPALQSRCTRFRFAPLKQDQIVPRLQEIVTTEGVKMSEGGMKALL 496
+V+F + K+ + SRC RF ++ + ++ L+ I T+E ++++ + +
Sbjct: 167 AHVKFIFATTEIRKVPVTVLSRCQRFDLRRIEPEVMIDLLRRIATSEQAEIADDALALIT 226
Query: 495 TLSGGDMRKVLNTL-QSTWLAYRDVTEDNVYTCVGHPLRADIDSILNWLLNENDFSACFK 319
+ G R + L Q+ + T D V +G R + +++ +L + +A +
Sbjct: 227 RAAEGSARDATSLLDQAISHGAGETTADQVRAMLGLADRGRVLDLMDMILRGDAAAALTE 286
Query: 318 -SIQDLKIAKGLALSDILAEVHTIIQRVKLPPE 223
S Q + A +A+ LAE+ + VK+ P+
Sbjct: 287 LSAQYAEGADPMAVLRDLAEITHWVSVVKITPD 319
>UniRef50_A6DLE8 Cluster: DNA polymerase III, gamma and tau
subunits; n=1; Lentisphaera araneosa HTCC2155|Rep: DNA
polymerase III, gamma and tau subunits - Lentisphaera
araneosa HTCC2155
Length = 890
Score = 66.5 bits (155), Expect = 8e-10
Identities = 48/194 (24%), Positives = 94/194 (48%), Gaps = 4/194 (2%)
Frame = -2
Query: 855 VLELNAXDDRGIGIVRGQILSFASTRTIFKAGPKLIILDEADAMTNDAQNALRRIIEKYT 676
V+E++ + + +R QI A T + K+ I+DE ++N A NAL + +E+
Sbjct: 91 VIEIDGASNNSVDDIR-QIREGAQY-TPARCPYKIFIIDEVHMLSNAAWNALLKTLEEPP 148
Query: 675 ENVRFCIICNYLGKIIPALQSRCTRFRFAPLKQDQIVPRLQEIVTTEGVKMSEGGMKALL 496
+++F + +++P + SRC R P+ ++ I RL+ I TE V + + + A+
Sbjct: 149 PHIKFLFATTEVHRVLPTILSRCQRLELKPIPRNVIAGRLKHICETENVAIEDSAINAIS 208
Query: 495 TLSGGDMR---KVLNTLQSTWLAYRDVTEDNVYTCVGHPLRADIDSILNWLLNENDFSAC 325
+ G MR +L+ + S ++E +V G ++ I + +L +N A
Sbjct: 209 RTANGGMRDGLSILDQMISFCSGNEIISEQDVIDVFGMSSSNELKLIASAIL-QNQAPAL 267
Query: 324 FKSIQDL-KIAKGL 286
++I L K A+ +
Sbjct: 268 IEAIDTLAKAARNM 281
>UniRef50_Q8SR43 Cluster: DNA REPLICATION FACTOR C 38kDa SUBUNIT;
n=1; Encephalitozoon cuniculi|Rep: DNA REPLICATION
FACTOR C 38kDa SUBUNIT - Encephalitozoon cuniculi
Length = 354
Score = 66.5 bits (155), Expect = 8e-10
Identities = 33/106 (31%), Positives = 58/106 (54%)
Frame = -2
Query: 768 KAGPKLIILDEADAMTNDAQNALRRIIEKYTENVRFCIICNYLGKIIPALQSRCTRFRFA 589
+A KL+++ A+ +T +AQ ALRR IE Y+ +R ++CN L ++I ++SRC R
Sbjct: 126 RAPIKLVVITSAEELTLEAQAALRRTIEVYSGVLRVVLVCNELSRLIEPIRSRCFFLRIP 185
Query: 588 PLKQDQIVPRLQEIVTTEGVKMSEGGMKALLTLSGGDMRKVLNTLQ 451
+ + + I+ E + + + + SGGDMR+ L L+
Sbjct: 186 GFSDEDVTSNMCRILEKENYTVPKETLVEICRESGGDMRRALCVLE 231
>UniRef50_A0B6D7 Cluster: Replication factor C large subunit; n=1;
Methanosaeta thermophila PT|Rep: Replication factor C
large subunit - Methanosaeta thermophila (strain DSM
6194 / PT) (Methanothrixthermophila (strain DSM 6194 /
PT))
Length = 467
Score = 66.5 bits (155), Expect = 8e-10
Identities = 51/187 (27%), Positives = 90/187 (48%), Gaps = 4/187 (2%)
Frame = -2
Query: 852 LELNAXDDRGIGIVRGQILSFASTRTIFKAGPKLIILDEADAM--TNDAQNA--LRRIIE 685
+ELNA D R I++ I AS + F +L+ILDEAD + T D A + R+I+
Sbjct: 69 IELNASDQRTAEIIKS-IAGPASQVSTFSGRRRLVILDEADNLHGTYDRGGAAAILRVIK 127
Query: 684 KYTENVRFCIICNYLGKIIPALQSRCTRFRFAPLKQDQIVPRLQEIVTTEGVKMSEGGMK 505
T+ V +I N I L+ C +F ++ I L+EI +EG++ +
Sbjct: 128 NATQPV--ILIANEYYNIEKPLRDACRGVQFRSIRAQTIASLLREICRSEGIECEPEAVM 185
Query: 504 ALLTLSGGDMRKVLNTLQSTWLAYRDVTEDNVYTCVGHPLRADIDSILNWLLNENDFSAC 325
+ +SGGD+R +N L++ + + ++V T ++A I +L+ + D +
Sbjct: 186 HIAAMSGGDLRSAINDLEAAARGLKHLRLEDVATS-ERDVKASIFRVLDSIFKGEDSRSA 244
Query: 324 FKSIQDL 304
++ L
Sbjct: 245 LEATYQL 251
>UniRef50_Q8RDI6 Cluster: DNA polymerase III, gamma/tau subunits;
n=3; Thermoanaerobacter|Rep: DNA polymerase III,
gamma/tau subunits - Thermoanaerobacter tengcongensis
Length = 518
Score = 65.7 bits (153), Expect = 1e-09
Identities = 50/198 (25%), Positives = 97/198 (48%), Gaps = 2/198 (1%)
Frame = -2
Query: 855 VLELNAXDDRGIGIVRGQILSFASTRTIFKAGPKLIILDEADAMTNDAQNALRRIIEKYT 676
VLE++A + + VR S + ++ K K+ I+DE ++ A NAL + +E+
Sbjct: 89 VLEIDAASNNSVNDVRELRESVIYSPSLTKY--KVYIIDEVHMLSTGAFNALLKTLEEPP 146
Query: 675 ENVRFCIICNYLGKIIPALQSRCTRFRFAPLKQDQIVPRLQEIVTTEGVKMSEGGMKALL 496
+V F + K+ + SRC RF F + QI L+ I G+++ + G++A+
Sbjct: 147 RHVIFILATTEPEKLPDTILSRCQRFDFKKIPTKQIAQNLERICQDSGIQIEQNGIRAIA 206
Query: 495 TLSGGDMRKVLNTLQSTWLAYRD--VTEDNVYTCVGHPLRADIDSILNWLLNENDFSACF 322
G MR ++ L+ +Y++ +T ++V +G + S+L+ + E D A
Sbjct: 207 LYGNGSMRDAISLLEQC-ASYKEGLITYEDVCEILGVANEEMLFSLLDHIY-EKDAVASL 264
Query: 321 KSIQDLKIAKGLALSDIL 268
+ + D ++ G+ L + L
Sbjct: 265 QQL-DKILSYGIDLGNFL 281
>UniRef50_A6NU34 Cluster: Putative uncharacterized protein; n=1;
Bacteroides capillosus ATCC 29799|Rep: Putative
uncharacterized protein - Bacteroides capillosus ATCC
29799
Length = 596
Score = 65.7 bits (153), Expect = 1e-09
Identities = 43/154 (27%), Positives = 73/154 (47%)
Frame = -2
Query: 855 VLELNAXDDRGIGIVRGQILSFASTRTIFKAGPKLIILDEADAMTNDAQNALRRIIEKYT 676
VLEL+A + G+ VR L + T ++ I+DE ++ A NAL +I+E+
Sbjct: 89 VLELDAASNNGVDQVRA--LRDEAVYTPAAVRKRVYIVDEVHMLSTAAFNALLKILEEPP 146
Query: 675 ENVRFCIICNYLGKIIPALQSRCTRFRFAPLKQDQIVPRLQEIVTTEGVKMSEGGMKALL 496
E++ F + L K+ ++SRC +F F + I RL + EG+ ++ G L
Sbjct: 147 EHLMFILATTELHKVPATIKSRCQQFAFKRILPGDIARRLSYVAEQEGIGLTSEGAALLA 206
Query: 495 TLSGGDMRKVLNTLQSTWLAYRDVTEDNVYTCVG 394
L+ G +R L+ L + E V + +G
Sbjct: 207 RLADGGLRDALSLLDQCVNPSGTIGEAEVLSALG 240
>UniRef50_Q5QWS2 Cluster: DNA polymerase III, gamma/tau subunits;
n=1; Idiomarina loihiensis|Rep: DNA polymerase III,
gamma/tau subunits - Idiomarina loihiensis
Length = 681
Score = 65.3 bits (152), Expect = 2e-09
Identities = 47/180 (26%), Positives = 90/180 (50%), Gaps = 1/180 (0%)
Frame = -2
Query: 756 KLIILDEADAMTNDAQNALRRIIEKYTENVRFCIICNYLGKIIPALQSRCTRFRFAPLKQ 577
K+ ++DE ++ + NAL + +E+ E+V+F + K+ + SRC +F L
Sbjct: 121 KVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQFNLKALSN 180
Query: 576 DQIVPRLQEIVTTEGVKMSEGGMKALLTLSGGDMRKVLN-TLQSTWLAYRDVTEDNVYTC 400
D I +L +++ E V+ + L + G MR L+ T Q+ V+ D+V
Sbjct: 181 DDITQQLSYVLSQEQVQADSEALPLLARSARGSMRDALSLTDQAIAQGGGSVSIDSVRRM 240
Query: 399 VGHPLRADIDSILNWLLNENDFSACFKSIQDLKIAKGLALSDILAEVHTIIQRVKLPPEV 220
+G+ ADI ++L +L E D A + + D ++ LS +L E+ +++ ++ L +V
Sbjct: 241 LGNVPVADIAALLESVL-EGDAEAVMQRV-DSMVSMVPDLSSVLVELQSLLHQLALVQQV 298
>UniRef50_Q2STA6 Cluster: DNA polymerase III gamma-tau subunits;
n=2; Mycoplasma|Rep: DNA polymerase III gamma-tau
subunits - Mycoplasma capricolum subsp. capricolum
(strain California kid / ATCC27343 / NCTC 10154)
Length = 669
Score = 65.3 bits (152), Expect = 2e-09
Identities = 46/173 (26%), Positives = 84/173 (48%), Gaps = 1/173 (0%)
Frame = -2
Query: 855 VLELNAXDDRGIGIVRGQILSFASTRTIFKAGPKLIILDEADAMTNDAQNALRRIIEKYT 676
++E++A + G+ +R +I + ST I + K+ I+DE +T A NAL + +E+
Sbjct: 92 IIEIDAASNNGVDEIR-EIKNSVSTLPI-NSKYKVYIIDEVHMLTKQAFNALLKTLEEPP 149
Query: 675 ENVRFCIICNYLGKIIPALQSRCTRFRFAPLKQDQIVPRLQEIVTTEGVKMSEGGMKALL 496
F + KI + SRC F F + ++ + RLQ IV E ++ + + +
Sbjct: 150 VYTIFILATTEFNKIPQTILSRCQIFNFTKIDKNSLKNRLQYIVNQENYQIEKEVLDEIF 209
Query: 495 TLSGGDMRKVLNTLQSTWLAYRD-VTEDNVYTCVGHPLRADIDSILNWLLNEN 340
LS G +R +N L+ LA D +T N+ + + + +++ LN N
Sbjct: 210 YLSEGSLRDAINILEQLMLATDDLITIKNLKSIFLIATKQEQLQVIHQSLNNN 262
>UniRef50_Q1ATA7 Cluster: DNA polymerase III, subunits gamma and
tau; n=1; Rubrobacter xylanophilus DSM 9941|Rep: DNA
polymerase III, subunits gamma and tau - Rubrobacter
xylanophilus (strain DSM 9941 / NBRC 16129)
Length = 567
Score = 65.3 bits (152), Expect = 2e-09
Identities = 42/132 (31%), Positives = 66/132 (50%), Gaps = 1/132 (0%)
Frame = -2
Query: 864 SSM-VLELNAXDDRGIGIVRGQILSFASTRTIFKAGPKLIILDEADAMTNDAQNALRRII 688
SSM V+E++A +RGI +R L K+ I+DE +T +A NAL +++
Sbjct: 86 SSMDVIEMDAASNRGIDEIRE--LRDRVNLAPAAGRAKVYIIDEVHMLTTEAFNALLKML 143
Query: 687 EKYTENVRFCIICNYLGKIIPALQSRCTRFRFAPLKQDQIVPRLQEIVTTEGVKMSEGGM 508
E+ E+V F + K++P + SRC F F +V +L EI EG++ +
Sbjct: 144 EEPPEHVVFVLATTEKHKVLPTIISRCQSFDFRRPGVGTLVEKLSEIARAEGIEAEREAL 203
Query: 507 KALLTLSGGDMR 472
A+ SGG R
Sbjct: 204 TAIARASGGSFR 215
>UniRef50_A1U128 Cluster: DNA polymerase III, subunits gamma and
tau; n=3; Gammaproteobacteria|Rep: DNA polymerase III,
subunits gamma and tau - Marinobacter aquaeolei (strain
ATCC 700491 / DSM 11845 / VT8)(Marinobacter
hydrocarbonoclasticus (strain DSM 11845))
Length = 637
Score = 65.3 bits (152), Expect = 2e-09
Identities = 51/214 (23%), Positives = 99/214 (46%), Gaps = 5/214 (2%)
Frame = -2
Query: 855 VLELNAXDDRGIGIVRGQI--LSFASTRTIFKAGPKLIILDEADAMTNDAQNALRRIIEK 682
++E++A G+ +R + +A TR +K + ++DE +TN + NA + +E+
Sbjct: 90 LIEIDAASRTGVDDMRELTDNVQYAPTRGRYK----VYLIDEVHMLTNQSFNAFLKTLEE 145
Query: 681 YTENVRFCIICNYLGKIIPALQSRCTRFRFAPLKQDQIVPRLQEIVTTEGVKMSEGGMKA 502
E+V+F + K+ + SRC +F + + IV L+ ++T E + + +
Sbjct: 146 PPEHVKFLLATTDPQKLPVTVLSRCLQFNLKRMTPEHIVGHLKHVLTEEQIPFEDPALWL 205
Query: 501 LLTLSGGDMRKVLN-TLQSTWLAYRDVTEDNVYTCVGHPLRADIDSILNWLLNEN--DFS 331
L + G MR L+ T Q+ ++ +V +G + DI I+N L+ +
Sbjct: 206 LARAADGSMRDALSLTDQAIAFGNENLAASDVSNMLGTIDQRDIQRIVNALVERDGPGLL 265
Query: 330 ACFKSIQDLKIAKGLALSDILAEVHTIIQRVKLP 229
+ I D G+ LSD+L+ H + +P
Sbjct: 266 SEINRISDFAPDYGVILSDMLSLFHRVTMEQVVP 299
>UniRef50_P40938 Cluster: Replication factor C subunit 3; n=64;
Eukaryota|Rep: Replication factor C subunit 3 - Homo
sapiens (Human)
Length = 356
Score = 65.3 bits (152), Expect = 2e-09
Identities = 34/98 (34%), Positives = 50/98 (51%)
Frame = -2
Query: 756 KLIILDEADAMTNDAQNALRRIIEKYTENVRFCIICNYLGKIIPALQSRCTRFRFAPLKQ 577
K+++L E D +T DAQ+ALRR +EKY R + CN K+IP ++SRC R
Sbjct: 130 KVVLLTEVDKLTKDAQHALRRTMEKYMSTCRLILCCNSTSKVIPPIRSRCLAVRVPAPSI 189
Query: 576 DQIVPRLQEIVTTEGVKMSEGGMKALLTLSGGDMRKVL 463
+ I L + EG+ + L S ++RK L
Sbjct: 190 EDICHVLSTVCKKEGLNLPSQLAHRLAEKSCRNLRKAL 227
>UniRef50_Q6MH32 Cluster: DNA polymerase III gamma and tau subunits;
n=1; Bdellovibrio bacteriovorus|Rep: DNA polymerase III
gamma and tau subunits - Bdellovibrio bacteriovorus
Length = 621
Score = 64.9 bits (151), Expect = 3e-09
Identities = 62/239 (25%), Positives = 109/239 (45%), Gaps = 4/239 (1%)
Frame = -2
Query: 855 VLELNAXDDRGIGIVRGQILSFASTRTIFKAGPKLIILDEADAMTNDAQNALRRIIEKYT 676
V+E++ + G+ +R + A + K K+ I+DE ++ A NAL + +E+
Sbjct: 106 VIEIDGASNNGVDAIRELRDTVAFMPSSGKY--KIYIIDEVHMLSTSAFNALLKTLEEPP 163
Query: 675 ENVRFCIICNYLGKIIPALQSRCTRFRFAPLKQDQIVPRLQEIVTTEGVKMSEGGMKALL 496
+V F + + KI + SRC RF F + I RL+ I EGV + + +
Sbjct: 164 AHVVFIMATTEVHKIPQTILSRCQRFDFRRISTRSITERLKLICDREGVTADDEALWVVA 223
Query: 495 TLSGGDMRKVLNTL-QSTWLAYRDVTEDNVYTCVGHPLRADIDSILNWLLNENDFSACFK 319
G MR + L Q A +T +V +G RA + LN L++ N A K
Sbjct: 224 RQGDGSMRDSQSLLDQVITFANGPLTRASVVEILGLTDRALLFETLNALIDRNS-QAVLK 282
Query: 318 SIQDLKIA---KGLALSDILAEVHTIIQRVKLPPEVLVSLLIKMSDAEARLASGSSERV 151
I+ + A L D+L + ++ +K+ E S +++M D+E + S ++R+
Sbjct: 283 VIEKIAAAGFEPHLYSQDLLEMIRNLL-LIKV-SEAQASQILEMPDSELQALSEMAQRL 339
>UniRef50_Q5FTB4 Cluster: DNA polymerase III subunit gamma/tau; n=6;
Rhodospirillales|Rep: DNA polymerase III subunit
gamma/tau - Gluconobacter oxydans (Gluconobacter
suboxydans)
Length = 652
Score = 64.9 bits (151), Expect = 3e-09
Identities = 64/250 (25%), Positives = 112/250 (44%), Gaps = 4/250 (1%)
Frame = -2
Query: 855 VLELNAXDDRGIGIVRGQILSFASTRTIFKAGPKLIILDEADAMTNDAQNALRRIIEKYT 676
VLE++A G+ VR +I+ R + +A K+ I+DE ++ +A NAL + +E+
Sbjct: 130 VLEMDAASRTGVDDVR-EIIEATRFRPM-QARMKVFIIDEVHMLSRNAFNALLKTLEEPP 187
Query: 675 ENVRFCIICNYLGKIIPALQSRCTRFRFAPLKQDQIVPRLQEIVTTEGVKMSEGGMKALL 496
V F L K+ + SRC RF + Q + I EG +SE + +
Sbjct: 188 PQVTFIFATTELRKVPVTVLSRCQRFDLRRVPQSLLAGHFHNIAVKEGATLSEDALALIA 247
Query: 495 TLSGGDMRKVLNTLQSTWLAYRDVTEDNVYTCVGHPLRADIDSILNWLLNENDFSACFKS 316
+ G +R L+ L +A D V +G R + +L+ L+ A
Sbjct: 248 RAADGSVRDGLSLLDQA-IAQGASDADAVADMLGLADRGLVFDLLDALMAGKPADAL--D 304
Query: 315 IQDLKIAK----GLALSDILAEVHTIIQRVKLPPEVLVSLLIKMSDAEARLASGSSERVE 148
+ D A+ G+ L+D+L +H +I R+K P + + +AE + ++R+
Sbjct: 305 LTDQAYARGADLGVLLADLLDLLH-LISRLKAIPSLREGR--DLPEAERTRGAALADRLS 361
Query: 147 LAALIASFQI 118
A L ++QI
Sbjct: 362 NAVLGRAWQI 371
>UniRef50_Q4UIQ4 Cluster: Replication factor C subunit, putative;
n=3; Piroplasmida|Rep: Replication factor C subunit,
putative - Theileria annulata
Length = 351
Score = 64.9 bits (151), Expect = 3e-09
Identities = 38/134 (28%), Positives = 65/134 (48%), Gaps = 2/134 (1%)
Frame = -2
Query: 849 ELNAXDDRGIGIVRGQILSFASTRTIFKAGP--KLIILDEADAMTNDAQNALRRIIEKYT 676
EL D + + + S S F GP + + ++AD +T +AQ ALRR +E Y
Sbjct: 96 ELGTRDRYIVQDIIRSLSSAPSASNFFSKGPSYRAFLFEDADTLTQEAQAALRRTMETYI 155
Query: 675 ENVRFCIICNYLGKIIPALQSRCTRFRFAPLKQDQIVPRLQEIVTTEGVKMSEGGMKALL 496
+N R + L +I+P L+SRC R D+IV L++I +E + S+ + L
Sbjct: 156 KNARMFLHVRQLSRIMPPLRSRCLCIRVRSHTNDEIVQILRKICNSEDITPSQASDQMLR 215
Query: 495 TLSGGDMRKVLNTL 454
++ R + ++
Sbjct: 216 NIAESSKRNLRRSI 229
>UniRef50_A2E870 Cluster: Putative uncharacterized protein; n=1;
Trichomonas vaginalis G3|Rep: Putative uncharacterized
protein - Trichomonas vaginalis G3
Length = 346
Score = 64.9 bits (151), Expect = 3e-09
Identities = 31/102 (30%), Positives = 61/102 (59%)
Frame = -2
Query: 756 KLIILDEADAMTNDAQNALRRIIEKYTENVRFCIICNYLGKIIPALQSRCTRFRFAPLKQ 577
K+++++EA ++ AQ ALRR +EKY ++ R +I + L +II ++SRC R +
Sbjct: 127 KVVVINEAHRLSKLAQQALRRTMEKYAKSCRIILIADSLSQIIEPVRSRCLVIRTPRIPS 186
Query: 576 DQIVPRLQEIVTTEGVKMSEGGMKALLTLSGGDMRKVLNTLQ 451
I ++E+ + E ++S+ + L+ S G++R+ +N L+
Sbjct: 187 ADIATAVKEVASKENFEISDEQLTDLVNESIGNLRRAINLLE 228
>UniRef50_O25419 Cluster: DNA polymerase III gamma and tau subunits;
n=4; Helicobacter|Rep: DNA polymerase III gamma and tau
subunits - Helicobacter pylori (Campylobacter pylori)
Length = 578
Score = 64.5 bits (150), Expect = 3e-09
Identities = 55/222 (24%), Positives = 101/222 (45%), Gaps = 3/222 (1%)
Frame = -2
Query: 855 VLELNAXDDRGIGIVRGQILSFASTRTIFKAGP-KLIILDEADAMTNDAQNALRRIIEKY 679
++E++ +RGI VR I TR G K+ I+DE T +A NAL + +E+
Sbjct: 88 IIEMDGASNRGIDDVRNLI---EQTRYKPSFGRYKIFIIDEVHMFTTEAFNALLKTLEEP 144
Query: 678 TENVRFCIICNYLGKIIPALQSRCTRFRFAPLKQDQIVPRLQEIVTTEGVKMSEGGMKAL 499
+V+F + K+ + SR FRF + ++ ++ L+ I+ E V ++ L
Sbjct: 145 PSHVKFLLATTDALKLPATILSRTQHFRFKKIPENSVISHLKTILEKEQVSYETSALEKL 204
Query: 498 LTLSGGDMRKVLNTLQSTWLAYRD--VTEDNVYTCVGHPLRADIDSILNWLLNENDFSAC 325
G +R + L+ + Y D +TE V +G R+ ++ L+N+++ A
Sbjct: 205 AHSGQGSLRDTITLLEQA-INYCDNAITESKVAEMLGAIDRSVLEDFFQSLINQDE--AR 261
Query: 324 FKSIQDLKIAKGLALSDILAEVHTIIQRVKLPPEVLVSLLIK 199
K + I + +L E+ ++ L P+ LLI+
Sbjct: 262 LK--ERYAILENYETESVLEEMMLFLKAKLLSPDFYSILLIE 301
>UniRef50_A6W567 Cluster: DNA polymerase III, subunits gamma and
tau; n=1; Kineococcus radiotolerans SRS30216|Rep: DNA
polymerase III, subunits gamma and tau - Kineococcus
radiotolerans SRS30216
Length = 712
Score = 64.5 bits (150), Expect = 3e-09
Identities = 47/186 (25%), Positives = 89/186 (47%), Gaps = 4/186 (2%)
Frame = -2
Query: 855 VLELNAXDDRGIGIVRG--QILSFASTRTIFKAGPKLIILDEADAMTNDAQNALRRIIEK 682
V+E++A G+ R + +SFA R FK + ILDEA ++ NAL + +E+
Sbjct: 91 VVEIDAASHNGVDDARDLRERVSFAPARDRFK----VYILDEAHMVSPQGFNALLKTVEE 146
Query: 681 YTENVRFCIICNYLGKIIPALQSRCTRFRFAPLKQDQIVPRLQEIVTTEGVKMSEGGMKA 502
+V+F K++ ++SR + F + Q+ L E+ EGV++ +G +
Sbjct: 147 PPPHVKFVFATTEPDKVLTTIRSRTHHYPFRLVPPGQLTAYLAELAEREGVRIGKGVLPL 206
Query: 501 LLTLSGGDMRKVLNTLQSTWLAYRD--VTEDNVYTCVGHPLRADIDSILNWLLNENDFSA 328
++ GG +R L+ L D VT D + +G+ + +D ++ L D +
Sbjct: 207 VVRAGGGSVRDTLSVLDQLIAGAGDEGVTYDIAVSLLGYTHASLLDDVVE-ALAAGDGAT 265
Query: 327 CFKSIQ 310
F++++
Sbjct: 266 VFRAVE 271
>UniRef50_A4SWQ4 Cluster: DNA polymerase III, subunits gamma and
tau; n=20; Burkholderiaceae|Rep: DNA polymerase III,
subunits gamma and tau - Polynucleobacter sp.
QLW-P1DMWA-1
Length = 553
Score = 64.5 bits (150), Expect = 3e-09
Identities = 53/215 (24%), Positives = 103/215 (47%), Gaps = 3/215 (1%)
Frame = -2
Query: 852 LELNAXDDRGIGIVRGQILSFASTRTIFKAGPKLIILDEADAMTNDAQNALRRIIEKYTE 673
+E++A +RG+ + + A + K+ ++DE +TN A NA+ + +E+ E
Sbjct: 96 IEMDAASNRGVDDIAALLEKAAYAPS--NGRYKVYMIDEVHMLTNHAFNAMLKTLEEPPE 153
Query: 672 NVRFCIICNYLGKIIPALQSRCTRFRFAPLKQDQIVPRLQEIVTTEGVKMSEGGMKALLT 493
+V+F + KI + SRC +F + IV L++++ E V+ ++ L
Sbjct: 154 HVKFILATTDPQKIPVTILSRCLQFNLKQMPVPLIVEHLEKVLAAEKVEYEVNALRVLAK 213
Query: 492 LSGGDMRKVLN-TLQSTWLAYRDVTEDNVYTCVGHPLRADIDSILNWLLNENDFS--ACF 322
+ G MR L+ T Q+ A V+E++V +G A + IL+ L+ ++ S +
Sbjct: 214 AAQGSMRDALSLTDQAIAYAAGKVSEESVRGMLGTLDDAYLIRILDCLIAKDGASLLSVA 273
Query: 321 KSIQDLKIAKGLALSDILAEVHTIIQRVKLPPEVL 217
+ + ++ LAL D+ + + I +P VL
Sbjct: 274 NEMGERSMSFSLALQDLSSLLQKIAAAQVVPESVL 308
>UniRef50_A1ISN1 Cluster: DNA polymerase III tau and gamma chains;
n=4; Neisseria|Rep: DNA polymerase III tau and gamma
chains - Neisseria meningitidis serogroup A
Length = 709
Score = 64.5 bits (150), Expect = 3e-09
Identities = 60/246 (24%), Positives = 117/246 (47%), Gaps = 4/246 (1%)
Frame = -2
Query: 855 VLELNAXDDRGIGIVRGQILSFASTRTIFKAGPKLIILDEADAMTNDAQNALRRIIEKYT 676
+LE++A + GI +R + + T K K+ I+DE ++ A NA+ + +E+
Sbjct: 90 LLEIDAASNTGIDNIREVLENAQYAPTAGKY--KVYIIDEVHMLSKSAFNAMLKTLEEPP 147
Query: 675 ENVRFCIICNYLGKIIPALQSRCTRFRFAPLKQDQIVPRLQEIVTTEGVKMSEGGMKALL 496
E+V+F + K+ + SRC +F + Q+ L ++ +E + ++ L
Sbjct: 148 EHVKFILATTDPHKVPVTVLSRCLQFVLRNMTAQQVARHLAYVLDSEKIAYDPPALQLLG 207
Query: 495 TLSGGDMRKVLNTL-QSTWLAYRDVTEDNVYTCVGHPLRADIDSILNWLLNENDFSACFK 319
+ G MR L+ L Q+ L V E++V +G + + +L ++N+N +A
Sbjct: 208 RAAAGSMRDALSLLDQAIALGSGKVAENDVRQMIGAVDKQYLYELLTGIINQNG-AALLA 266
Query: 318 SIQDLKIAKGLALSDILAEVHTIIQRVKLPPEVLVSLLIKMSDAEA--RLASG-SSERVE 148
Q++ A + + L E+ ++Q++ L V +L D++ RLA S E+++
Sbjct: 267 KAQEM-AACAVGFDNALGELAILLQQLALIQAVPNALSHDDPDSDILHRLAQTISGEQIQ 325
Query: 147 LAALIA 130
L IA
Sbjct: 326 LYYQIA 331
>UniRef50_Q1IQ74 Cluster: DNA polymerase III, subunits gamma and
tau; n=1; Acidobacteria bacterium Ellin345|Rep: DNA
polymerase III, subunits gamma and tau - Acidobacteria
bacterium (strain Ellin345)
Length = 632
Score = 64.1 bits (149), Expect = 5e-09
Identities = 61/240 (25%), Positives = 110/240 (45%), Gaps = 1/240 (0%)
Frame = -2
Query: 855 VLELNAXDDRGIGIVRGQILSFASTRTIFKAGPKLIILDEADAMTNDAQNALRRIIEKYT 676
V+E++A +RGI +R ++ A R + K+ ILDEA +T+ A NAL + +E+
Sbjct: 92 VIEIDAATNRGIDEIR-ELREAARYRPA-RDRFKIYILDEAHQITDAAFNALLKTLEEPP 149
Query: 675 ENVRFCIICNYLGKIIPALQSRCTRFRFAPLKQDQIVPRLQEIVTTEGVKMSEGGMKALL 496
++ F + I ++SRC F F +K D IV +L++I EG+ + + L
Sbjct: 150 GHIVFMMATTEPEDIPQTIRSRCQHFSFHAVKFDDIVLQLRDIAGKEGIGAEDDALAMLA 209
Query: 495 TLSGGDMRKVLNTL-QSTWLAYRDVTEDNVYTCVGHPLRADIDSILNWLLNENDFSACFK 319
G MR L+ + Q+ + D+V +G ++ I+N ++ N +
Sbjct: 210 EAGDGSMRDALSIMDQAIAACGNQLKTDDVRGLMGTVSSDVLEDIMNG-VHANSSESVLT 268
Query: 318 SIQDLKIAKGLALSDILAEVHTIIQRVKLPPEVLVSLLIKMSDAEARLASGSSERVELAA 139
+I L L + + +H Q V+ +V+ + A +++S ERV A
Sbjct: 269 TIDKL-------LIEGHSPLHFAKQAVRFLRNAMVAKVAGKDSALLQISSDERERVARVA 321
>UniRef50_A4E9Y5 Cluster: Putative uncharacterized protein; n=1;
Collinsella aerofaciens ATCC 25986|Rep: Putative
uncharacterized protein - Collinsella aerofaciens ATCC
25986
Length = 825
Score = 64.1 bits (149), Expect = 5e-09
Identities = 64/246 (26%), Positives = 115/246 (46%), Gaps = 2/246 (0%)
Frame = -2
Query: 855 VLELNAXDDRGIGIVRGQILSFASTRTIFKAGPKLIILDEADAMTNDAQNALRRIIEKYT 676
V EL+A G+ VR +I++ + + + K+ I+DE +T A NAL + +E+
Sbjct: 96 VYELDAASRTGVDNVREEIINSVNFAPV-RGKYKIYIIDEVHMLTTAAFNALLKTLEEPP 154
Query: 675 ENVRFCIICNYLGKIIPALQSRCTRFRFAPLKQDQIVPRLQEIVTTEGVKMSEGGMKALL 496
+V F + KI+ + SRC RF F + + I RL + EG + + +
Sbjct: 155 AHVIFVLCTTDPQKILETILSRCQRFDFHRIGNEDIEHRLSYVCEQEGFDYDDEALAIVA 214
Query: 495 TLSGGDMRKVLNTL-QSTWLAYRDVTEDNVYTCVGHPLRADIDSILNWLLNENDFSACFK 319
+ G MR L+TL Q + V D+ + +G + I + + + D + +
Sbjct: 215 RHAKGGMRDALSTLEQLSVFGNGSVHADDARSLLGE-VSDQILGEFSRAIADRDVAELYG 273
Query: 318 SIQDLKIAKGLALSDILAEVHTIIQRVKLPPEVLVSLLIKMSDAEARLASGSSERVE-LA 142
I+ ++ +G +D+L ++ V+ +V V+ ++ A A L G SE+ E LA
Sbjct: 274 LIR-AQVEEG---NDLLELTRDLVAHVR---DVYVAC---VAGARAELFEGGSEQAEALA 323
Query: 141 ALIASF 124
A A+F
Sbjct: 324 AEAAAF 329
>UniRef50_A3WNZ0 Cluster: DNA polymerase III, gamma/tau subunits;
n=1; Idiomarina baltica OS145|Rep: DNA polymerase III,
gamma/tau subunits - Idiomarina baltica OS145
Length = 640
Score = 64.1 bits (149), Expect = 5e-09
Identities = 53/207 (25%), Positives = 98/207 (47%), Gaps = 3/207 (1%)
Frame = -2
Query: 756 KLIILDEADAMTNDAQNALRRIIEKYTENVRFCIICNYLGKIIPALQSRCTRFRFAPLKQ 577
K+ ++DE ++ + NAL + +E+ E+V+F + K+ + SRC +F L +
Sbjct: 121 KVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTVVSRCLQFNLRALDR 180
Query: 576 DQIVPRLQEIVTTEGVKMSEGGMKALLTLSGGDMRKVLN-TLQSTWLAYRDVTEDNVYTC 400
+QIV +L+ ++ E V + L + G MR L+ T Q+ V ++V
Sbjct: 181 EQIVGQLEYVLENENVPHDAQALTLLAQSAKGSMRDALSLTDQAIAQGQGKVQVESVQRM 240
Query: 399 VGHPLRADIDSILNWLLNENDFSACFKSIQDLKIAKGLALSDILAEVHTIIQRVKLPPEV 220
+GH A + +L+ L D + F+ +LK L IL E+ +I R+ L ++
Sbjct: 241 LGHLADAHVHPLLD-ALASGDSGSVFEKFDELKSLVPDPLM-ILNELQRVIHRIALIQQI 298
Query: 219 --LVSLLIKMSDAEARLASGSSERVEL 145
++ K + EA L +E ++L
Sbjct: 299 PAMMGAEDKTNTTEALLRKLPAEVLQL 325
>UniRef50_Q9PR58 Cluster: DNA polymerase III gamma-tau subunits;
n=1; Ureaplasma parvum|Rep: DNA polymerase III gamma-tau
subunits - Ureaplasma parvum (Ureaplasma urealyticum
biotype 1)
Length = 597
Score = 63.7 bits (148), Expect = 6e-09
Identities = 46/184 (25%), Positives = 85/184 (46%)
Frame = -2
Query: 855 VLELNAXDDRGIGIVRGQILSFASTRTIFKAGPKLIILDEADAMTNDAQNALRRIIEKYT 676
++EL+A + G+ +R + T FK K+ I+DEA ++ A NAL + +E+
Sbjct: 90 LIELDAASNNGVDQIRIITDNINYLPTFFKY--KVYIIDEAHMLSTSAWNALLKTVEEPP 147
Query: 675 ENVRFCIICNYLGKIIPALQSRCTRFRFAPLKQDQIVPRLQEIVTTEGVKMSEGGMKALL 496
++V F KI + SRC R+ F L ++ + I+T E +K+ + L+
Sbjct: 148 QHVIFIFATTEYQKIPLTIISRCQRYDFKRLNNSELQELIDSILTKEDIKIDNNAIDKLI 207
Query: 495 TLSGGDMRKVLNTLQSTWLAYRDVTEDNVYTCVGHPLRADIDSILNWLLNENDFSACFKS 316
L+ G R L+ L +++ D + G + S++ L+ +ND +
Sbjct: 208 QLADGSGRDCLSILDQLTTVKKNIDLDLINKTFGLVDNFKVISLIE-LIQKNDILLLREF 266
Query: 315 IQDL 304
I +L
Sbjct: 267 IYEL 270
>UniRef50_Q2GI84 Cluster: DNA polymerase III, subunits gamma and
tau; n=6; canis group|Rep: DNA polymerase III, subunits
gamma and tau - Ehrlichia chaffeensis (strain Arkansas)
Length = 505
Score = 63.7 bits (148), Expect = 6e-09
Identities = 32/116 (27%), Positives = 59/116 (50%)
Frame = -2
Query: 756 KLIILDEADAMTNDAQNALRRIIEKYTENVRFCIICNYLGKIIPALQSRCTRFRFAPLKQ 577
K+ I+DE ++N A NAL +++E+ V+F + + KI + SRC RF F +
Sbjct: 131 KVYIIDEVHMLSNSAFNALLKVLEEPAPYVKFILATTEVKKIPVTIISRCQRFDFQRIST 190
Query: 576 DQIVPRLQEIVTTEGVKMSEGGMKALLTLSGGDMRKVLNTLQSTWLAYRDVTEDNV 409
D++V L+ + E V E +K + + G +R L+ L+ + + +N+
Sbjct: 191 DKLVDHLKVVAKKENVSFDEESIKLIAYNADGSIRNALSLLEQAAIYSNKILSENI 246
>UniRef50_Q1K472 Cluster: DNA polymerase III, subunits gamma and
tau; n=4; Desulfuromonadales|Rep: DNA polymerase III,
subunits gamma and tau - Desulfuromonas acetoxidans DSM
684
Length = 597
Score = 63.7 bits (148), Expect = 6e-09
Identities = 37/122 (30%), Positives = 63/122 (51%), Gaps = 1/122 (0%)
Frame = -2
Query: 756 KLIILDEADAMTNDAQNALRRIIEKYTENVRFCIICNYLGKIIPALQSRCTRFRFAPLKQ 577
K+ I+DE ++ +A NAL + +E+ E+V+F KI + SRC RF F +
Sbjct: 121 KIFIIDEVHMLSINAFNALLKTLEEPPEHVKFIFATTEPHKIPVTILSRCQRFDFRKIPA 180
Query: 576 DQIVPRLQEIVTTEGVKMSEGGMKALLTLSGGDMRKVLNTL-QSTWLAYRDVTEDNVYTC 400
++V +L+ IV E + +S+ + + GG MR L+TL Q V +++V
Sbjct: 181 PKVVAQLRRIVDAENITISDRALALIAQRGGGSMRDSLSTLDQVVAFCSEQVADEDVQGL 240
Query: 399 VG 394
+G
Sbjct: 241 LG 242
>UniRef50_Q1EZ15 Cluster: DNA polymerase III, subunits gamma and
tau; n=2; Clostridiaceae|Rep: DNA polymerase III,
subunits gamma and tau - Clostridium oremlandii OhILAs
Length = 563
Score = 63.7 bits (148), Expect = 6e-09
Identities = 54/208 (25%), Positives = 99/208 (47%), Gaps = 5/208 (2%)
Frame = -2
Query: 855 VLELNAXDDRGIGIVRGQILSFASTRTIFKAGPKLIILDEADAMTNDAQNALRRIIEKYT 676
V+E++A + G+ VR +I K K+ I+DE ++ A NAL + +E+
Sbjct: 90 VIEIDAASNNGVDNVR-EIRENVKYPPS-KGKYKIYIIDEVHMLSTGAFNALLKTLEEPP 147
Query: 675 ENVRFCIICNYLGKIIPALQSRCTRFRFAPLKQDQIVPRLQEIVTTEGVKMSEGGMKALL 496
V F + KI + SRC RF F P++ + I+ RL+ I G+K E ++ +
Sbjct: 148 SYVIFILATTEPHKIPATILSRCQRFDFKPVRINDIMKRLESICEDIGIKTEEEALRLIA 207
Query: 495 TLSGGDMRKVLNTLQSTWLAYRD--VTEDNVYTCVGHPLRADIDSILNWLLNENDFSACF 322
S G +R L+ L+ ++Y + +T NV +G I +++ + D S+
Sbjct: 208 LNSDGALRDALSILEQC-ISYTEDTLTYTNVVNILGMVNYEFIFDLVD-KIAAKDTSSVL 265
Query: 321 KSIQDLKIA---KGLALSDILAEVHTII 247
I D+ + G+ + DI++ +I+
Sbjct: 266 TLINDILMEGKDAGILMKDIISHFRSIL 293
>UniRef50_A6DD60 Cluster: DNA polymerase III subunits gamma and tau;
n=1; Caminibacter mediatlanticus TB-2|Rep: DNA
polymerase III subunits gamma and tau - Caminibacter
mediatlanticus TB-2
Length = 487
Score = 63.3 bits (147), Expect = 8e-09
Identities = 50/187 (26%), Positives = 94/187 (50%), Gaps = 2/187 (1%)
Frame = -2
Query: 855 VLELNAXDDRGIGIVRGQILSFASTRTIFKAGPKLIILDEADAMTNDAQNALRRIIEKYT 676
++E++A +R I +R I +I + K+ I+DE +TN+A NAL + +E+
Sbjct: 87 IIEMDAASNRKIEDIRELIEHTKYKPSISRF--KIFIIDEVHMLTNEAFNALLKTLEEPP 144
Query: 675 ENVRFCIICNYLGKIIPALQSRCTRFRFAPLKQDQIVPRLQEIVTTEGVKMSEGGMKALL 496
E V+F + K+ + SR FRF + + +I LQ+++ E VK + ++ ++
Sbjct: 145 EYVKFIMATTDPLKLPATILSRVQHFRFNKIPEKEIESFLQKVLIKENVKFEDEALRLIV 204
Query: 495 TLSGGDMRKVLNTLQSTWLAYR--DVTEDNVYTCVGHPLRADIDSILNWLLNENDFSACF 322
+ G +R L TL +AY ++T D V +G + +I S + L+ + D
Sbjct: 205 KSAKGSVRDSL-TLLDQAIAYSNYNITLDKVVEMLG-VINPEIISKIFKLIFDGDKKEII 262
Query: 321 KSIQDLK 301
+ I+ +K
Sbjct: 263 EIIKQIK 269
>UniRef50_A3JQW8 Cluster: DNA polymerase III subunits gamma and tau;
n=1; Rhodobacterales bacterium HTCC2150|Rep: DNA
polymerase III subunits gamma and tau - Rhodobacterales
bacterium HTCC2150
Length = 596
Score = 63.3 bits (147), Expect = 8e-09
Identities = 50/213 (23%), Positives = 98/213 (46%), Gaps = 2/213 (0%)
Frame = -2
Query: 855 VLELNAXDDRGIGIVRGQILSFASTRTIFKAGPKLIILDEADAMTNDAQNALRRIIEKYT 676
++E++A G+G +R +I+ R A K+ I+DE ++N A NAL + +E+
Sbjct: 101 IMEMDAASRTGVGDIR-EIIESVHYRAA-SARYKIYIIDEVHMLSNSAFNALLKTLEEPP 158
Query: 675 ENVRFCIICNYLGKIIPALQSRCTRFRFAPLKQDQIVPRLQEIVTTEGVKMSEGGMKALL 496
E+V+F + K+ + SRC RF ++ + ++ LQ +E +++ + +
Sbjct: 159 EHVKFVFATTEIRKVPVTVLSRCQRFDLRRIEPEVMIKMLQGNAASENANITDDALALIT 218
Query: 495 TLSGGDMRKVLNTL-QSTWLAYRDVTEDNVYTCVGHPLRADIDSILNWLLNENDFSACFK 319
+ G R + L Q+ + T D V +G R + + ++ + A +
Sbjct: 219 RAAEGSARDAQSLLDQAISHGAGETTADQVRAMLGLADRGRVMDMFEMIMRGDAAGALAE 278
Query: 318 -SIQDLKIAKGLALSDILAEVHTIIQRVKLPPE 223
S Q A LA+ LAE+ + +K+ P+
Sbjct: 279 LSAQYSDGADPLAVLRDLAEITHWVSVIKITPD 311
>UniRef50_A2RNZ7 Cluster: DNA polymerase III subunits gamma / tau;
n=3; Lactococcus lactis|Rep: DNA polymerase III subunits
gamma / tau - Lactococcus lactis subsp. cremoris (strain
MG1363)
Length = 553
Score = 63.3 bits (147), Expect = 8e-09
Identities = 51/184 (27%), Positives = 80/184 (43%)
Frame = -2
Query: 855 VLELNAXDDRGIGIVRGQILSFASTRTIFKAGPKLIILDEADAMTNDAQNALRRIIEKYT 676
V+EL+A + G+ +R + ST +A K+ I+DE ++ A NAL + +E+ T
Sbjct: 90 VIELDAASNNGVDEIRE--IRDKSTYAASQATYKVYIIDEVHMLSTGAFNALLKTLEEPT 147
Query: 675 ENVRFCIICNYLGKIIPALQSRCTRFRFAPLKQDQIVPRLQEIVTTEGVKMSEGGMKALL 496
ENV F + L KI + SR RF F + I L +I+ EGV+ + + +
Sbjct: 148 ENVVFVLATTELQKIPATIISRVQRFAFKSITTADIRTYLGKILGDEGVEFEDKALDVIA 207
Query: 495 TLSGGDMRKVLNTLQSTWLAYRDVTEDNVYTCVGHPLRADIDSILNWLLNENDFSACFKS 316
+ G MR L+ L E+ V + AD L END S
Sbjct: 208 KAAEGGMRDALSLLDQALSFSAGKLEEEDALLVTGSIAADALVSYVLALFENDESKALTE 267
Query: 315 IQDL 304
+ +
Sbjct: 268 LDKI 271
>UniRef50_Q9SN33 Cluster: Putative uncharacterized protein
F28A21.230; n=2; Arabidopsis thaliana|Rep: Putative
uncharacterized protein F28A21.230 - Arabidopsis
thaliana (Mouse-ear cress)
Length = 1057
Score = 63.3 bits (147), Expect = 8e-09
Identities = 31/104 (29%), Positives = 59/104 (56%), Gaps = 1/104 (0%)
Frame = -2
Query: 759 PKLIILDEADAMTNDAQNALRRIIEKYT-ENVRFCIICNYLGKIIPALQSRCTRFRFAPL 583
P++ I D+ D +++D NAL +++++ +V F ++C+ L + + SRC +F F L
Sbjct: 546 PRVFIFDDCDTLSSDCWNALSKVVDRAAPRHVVFILVCSSLDVLPHVIISRCQKFFFPKL 605
Query: 582 KQDQIVPRLQEIVTTEGVKMSEGGMKALLTLSGGDMRKVLNTLQ 451
K IV LQ I + E +++ + +K + + S G +R TL+
Sbjct: 606 KDADIVYSLQWIASKEEIEIDKDALKLIASRSDGSLRDAEMTLE 649
>UniRef50_Q9FK71 Cluster: Similarity to DNA polymerase III; n=3;
Arabidopsis thaliana|Rep: Similarity to DNA polymerase
III - Arabidopsis thaliana (Mouse-ear cress)
Length = 900
Score = 63.3 bits (147), Expect = 8e-09
Identities = 34/120 (28%), Positives = 60/120 (50%)
Frame = -2
Query: 753 LIILDEADAMTNDAQNALRRIIEKYTENVRFCIICNYLGKIIPALQSRCTRFRFAPLKQD 574
++I D+ D M+ D N L +I+++ V F ++C+ L + + SRC +F F LK
Sbjct: 458 VLIFDDCDTMSTDCWNTLSKIVDRAPRRVVFVLVCSSLDVLPHIIVSRCQKFFFPKLKDV 517
Query: 573 QIVPRLQEIVTTEGVKMSEGGMKALLTLSGGDMRKVLNTLQSTWLAYRDVTEDNVYTCVG 394
I+ LQ I + E + + + +K + + S G +R TL+ L ++ V VG
Sbjct: 518 DIIDSLQLIASKEEIDIDKDALKLVASRSDGSLRDAEMTLEQLSLLGTRISVPLVQEMVG 577
>UniRef50_Q899U1 Cluster: DNA polymerase III subunits gamma and tau;
n=12; Clostridium|Rep: DNA polymerase III subunits gamma
and tau - Clostridium tetani
Length = 552
Score = 62.9 bits (146), Expect = 1e-08
Identities = 61/229 (26%), Positives = 106/229 (46%), Gaps = 10/229 (4%)
Frame = -2
Query: 756 KLIILDEADAMTNDAQNALRRIIEKYTENVRFCIICNYLGKIIPALQSRCTRFRFAPLKQ 577
K+ I+DE ++ A NA + +E+ NV F + K+ + SRC RF F +K
Sbjct: 124 KVYIMDEVHMLSTGAVNAFLKTLEEPPSNVIFILATTDPQKLPITILSRCQRFDFKRIKS 183
Query: 576 DQIVPRLQEIVTTEGVKMSEGGMKALLTLSGGDMRKVLNTL-QSTWLAYRDVTEDNVYTC 400
+ I RL+ I+T +G + ++ + +S G MR L L Q V ++V +
Sbjct: 184 EDIFQRLRFIITQQGFFADDNSLRLISRISDGAMRDALGVLDQVISTGNGRVEYEDVVSI 243
Query: 399 VGHPLRADIDSILNWLLNENDFSACFKSIQDLKIAKGLALSDILAE--VH----TIIQRV 238
+G ++ + + ++ + D C K I+++ I G ++I+ + +H II+
Sbjct: 244 LGLITNENLIKLTDSII-KKDIEECVKIIEEV-IFSGKDSNNIIKDLILHMRNLLIIKVS 301
Query: 237 KLPPEVLVSLLIKMSDAEARLASGSSERV---ELAALIASFQIARDQVK 100
+ P EVL MS+ L SE+V E+ I Q A +Q K
Sbjct: 302 QNPYEVL-----DMSEENIALLKEQSEKVRVEEIMRFIRILQEAEEQSK 345
>UniRef50_A7BAA1 Cluster: Putative uncharacterized protein; n=1;
Actinomyces odontolyticus ATCC 17982|Rep: Putative
uncharacterized protein - Actinomyces odontolyticus ATCC
17982
Length = 967
Score = 62.9 bits (146), Expect = 1e-08
Identities = 47/186 (25%), Positives = 88/186 (47%), Gaps = 4/186 (2%)
Frame = -2
Query: 855 VLELNAXDDRGIGIVRG--QILSFASTRTIFKAGPKLIILDEADAMTNDAQNALRRIIEK 682
V+E++A G+ R + +FA R +K + I+DEA +TN NAL +++E+
Sbjct: 91 VVEIDAASHGGVDDARDLRERATFAPVRDRYK----IFIIDEAHMVTNQGFNALLKLVEE 146
Query: 681 YTENVRFCIICNYLGKIIPALQSRCTRFRFAPLKQDQIVPRLQEIVTTEGVKMSEGGMKA 502
E+V+F ++I ++SR + F + D + P L + + E + + EG +
Sbjct: 147 PPEHVKFVFATTEPERVIGTIRSRTHHYPFRLVPPDVLGPYLTGLCSEEHIGVGEGVLTL 206
Query: 501 LLTLSGGDMRKVLNTLQSTWLAYRD--VTEDNVYTCVGHPLRADIDSILNWLLNENDFSA 328
++ GG +R L+ L D VT +G+ A +D ++ L D +A
Sbjct: 207 VMRAGGGSVRDTLSVLDQLMAGAIDGQVTYQTAVALLGYTDSALLDESVDALAG-GDGAA 265
Query: 327 CFKSIQ 310
F+ ++
Sbjct: 266 AFRVVE 271
>UniRef50_A1K419 Cluster: DNA polymerase III subunit Tau; n=2;
Azoarcus|Rep: DNA polymerase III subunit Tau - Azoarcus
sp. (strain BH72)
Length = 662
Score = 62.9 bits (146), Expect = 1e-08
Identities = 60/245 (24%), Positives = 111/245 (45%), Gaps = 4/245 (1%)
Frame = -2
Query: 852 LELNAXDDRGIGIVRGQILSFASTRTIFKAGPKLIILDEADAMTNDAQNALRRIIEKYTE 673
+E++A +RG+ + +L A + + K+ ++DE +T A NA+ + +E+ E
Sbjct: 91 VEMDAASNRGVEDMAA-LLDKAVYAPV-QGRYKVYMIDEVHMLTGHAFNAMLKTLEEPPE 148
Query: 672 NVRFCIICNYLGKIIPALQSRCTRFRFAPLKQDQIVPRLQEIVTTEGVKMSEGGMKALLT 493
+V+F + KI + SRC +F + Q IV L ++T E V ++ +
Sbjct: 149 HVKFILATTDPQKIPVTVLSRCLQFNLKQMPQGHIVEHLDRVLTAEAVPFEPPALRHIAK 208
Query: 492 LSGGDMRKVLNTL-QSTWLAYRDVTEDNVYTCVGHPLRADIDSILNWLLNENDFSACFKS 316
+ G MR L+ L Q+ V E+ V +G + ++L L + A +
Sbjct: 209 AANGSMRDALSLLDQAIAHGAGKVAEEQVTHMLGTVGDDHLHAVLEALAAAD--MAALLA 266
Query: 315 IQDLKIAKGLALSDILAEVHTIIQRVKL---PPEVLVSLLIKMSDAEARLASGSSERVEL 145
+ D A+ L+ L + +++ RV L P + L + S E A+ +E ++L
Sbjct: 267 VADGMEARSLSFDAALQALASLLHRVALYQFAPAAITDPL-ERSRVEVHAAAFDAEFLQL 325
Query: 144 AALIA 130
A IA
Sbjct: 326 AYQIA 330
>UniRef50_A3FQ95 Cluster: Replication factor C subunit 5, putative;
n=3; Cryptosporidium|Rep: Replication factor C subunit
5, putative - Cryptosporidium parvum Iowa II
Length = 345
Score = 62.9 bits (146), Expect = 1e-08
Identities = 35/121 (28%), Positives = 65/121 (53%), Gaps = 2/121 (1%)
Frame = -2
Query: 804 QILSFASTRTIFKAGP--KLIILDEADAMTNDAQNALRRIIEKYTENVRFCIICNYLGKI 631
Q+ S + F GP ++ + EAD ++ AQ LRR +EKY+ N R + C L I
Sbjct: 112 QLSSQMGANSFFSKGPNYRVFTILEADVLSLKAQAGLRRTMEKYSNNSRLILHCEQLSSI 171
Query: 630 IPALQSRCTRFRFAPLKQDQIVPRLQEIVTTEGVKMSEGGMKALLTLSGGDMRKVLNTLQ 451
IP L+SRC R ++++ L+ I +E +++ ++ ++T S ++R+ + L+
Sbjct: 172 IPPLRSRCLCIRVPLPSPEEVLQVLRFISNSENLQVPNNYLEQIVTESECNLRRAILILE 231
Query: 450 S 448
+
Sbjct: 232 T 232
>UniRef50_Q5L3X6 Cluster: DNA-directed DNA polymerase III gamma and
tau subunits; n=2; Geobacillus|Rep: DNA-directed DNA
polymerase III gamma and tau subunits - Geobacillus
kaustophilus
Length = 559
Score = 62.5 bits (145), Expect = 1e-08
Identities = 50/193 (25%), Positives = 96/193 (49%), Gaps = 4/193 (2%)
Frame = -2
Query: 855 VLELNAXDDRGIGIVRG--QILSFASTRTIFKAGPKLIILDEADAMTNDAQNALRRIIEK 682
VLE++A + + +R + + FA T +K + I+DE ++ A NAL + +E+
Sbjct: 90 VLEIDAASNNRVDEIRDIREKVKFAPTSARYK----VYIIDEVHMLSIGAFNALLKTLEE 145
Query: 681 YTENVRFCIICNYLGKIIPALQSRCTRFRFAPLKQDQIVPRLQEIVTTEGVKMSEGGMKA 502
++V F + KI + SRC RF F + IV RL+ + + +GV+ S+ + A
Sbjct: 146 PPKHVIFILATTEPHKIPTTIISRCQRFDFRRIPLPAIVSRLKYVASAQGVEASDEALSA 205
Query: 501 LLTLSGGDMRKVLNTLQSTWLAYRD--VTEDNVYTCVGHPLRADIDSILNWLLNENDFSA 328
+ + G MR L+ L +++ D + D+V G A + S + ++ D +A
Sbjct: 206 IARAADGGMRDALSLLDQA-ISFSDGKLRLDDVLAMTGAASFAALSSFIE-AIHRKDTAA 263
Query: 327 CFKSIQDLKIAKG 289
+ ++ + +A+G
Sbjct: 264 VLQQLETM-MAQG 275
>UniRef50_Q2RZH6 Cluster: DNA polymerase III, subunits gamma and
tau, putative; n=1; Salinibacter ruber DSM 13855|Rep:
DNA polymerase III, subunits gamma and tau, putative -
Salinibacter ruber (strain DSM 13855)
Length = 728
Score = 62.5 bits (145), Expect = 1e-08
Identities = 34/99 (34%), Positives = 51/99 (51%)
Frame = -2
Query: 756 KLIILDEADAMTNDAQNALRRIIEKYTENVRFCIICNYLGKIIPALQSRCTRFRFAPLKQ 577
K+ ILDE ++ A NAL + +E+ + F K++P + SRC RF F +
Sbjct: 129 KVYILDEVHMLSKQAFNALLKTLEEPPAHALFIFATTEPHKVLPTILSRCQRFDFRRIPV 188
Query: 576 DQIVPRLQEIVTTEGVKMSEGGMKALLTLSGGDMRKVLN 460
+IV RL+EI TEGV+ E + L G +R L+
Sbjct: 189 PEIVQRLREICETEGVEADEESLMLLARKGNGALRDALS 227
>UniRef50_Q74GZ9 Cluster: DNA polymerase III, gamma and tau
subunits; n=4; Deltaproteobacteria|Rep: DNA polymerase
III, gamma and tau subunits - Geobacter sulfurreducens
Length = 579
Score = 62.1 bits (144), Expect = 2e-08
Identities = 43/158 (27%), Positives = 80/158 (50%), Gaps = 4/158 (2%)
Frame = -2
Query: 855 VLELNAXDDRGIGIVRG--QILSFASTRTIFKAGPKLIILDEADAMTNDAQNALRRIIEK 682
VLE++ + G+ +R + + + +R +K + I+DE ++ +A NAL + +E+
Sbjct: 90 VLEIDGASNTGVDDIRELRENVKYLPSRLRYK----IFIIDEVHMLSTNAFNALLKTLEE 145
Query: 681 YTENVRFCIICNYLGKIIPALQSRCTRFRFAPLKQDQIVPRLQEIVTTEGVKMSEGGMKA 502
+V+F K+ + SRC RF F + ++V RL+ IV EG+ +S+ +
Sbjct: 146 PPPHVKFIFATTEPHKLPITILSRCQRFDFRRIPLAKVVARLRYIVDREGISISDESLAV 205
Query: 501 LLTLSGGDMRKVLNTLQSTWLAY--RDVTEDNVYTCVG 394
+ G MR L+ L LA+ V +D+V + +G
Sbjct: 206 VARKGDGSMRDSLSVLDQV-LAFCGETVNDDDVVSLLG 242
>UniRef50_A5YSV5 Cluster: Replication factor C small subunit II;
n=4; Halobacteriaceae|Rep: Replication factor C small
subunit II - uncultured haloarchaeon
Length = 375
Score = 62.1 bits (144), Expect = 2e-08
Identities = 53/228 (23%), Positives = 97/228 (42%), Gaps = 3/228 (1%)
Frame = -2
Query: 756 KLIILDEADAMTNDAQNALRRIIEKYTENVRFCIICNYLGKIIPALQSRCTRFRFAPLKQ 577
K ++LD A+ + D Q ALRR++E+Y +N +F I +IP ++SRC
Sbjct: 139 KTVLLDNAETIREDFQQALRRVMERYHKNTQFIIATRQPTTLIPPIRSRCFPVPIRAPTA 198
Query: 576 DQIVPRLQEIVTTEGVKMSEGGMKALLTLSGGDMRKVLNTLQSTWL-AYRDVTEDNVYTC 400
D+I + +I EGV+ E + + + + GD+R + Q + +T D
Sbjct: 199 DEIESVVTDIAAVEGVETDEMAVTLIASKADGDLRYAILAAQHAAIEGDGAITTDAAQEA 258
Query: 399 VGHPLRADIDSILNWLLNENDFSACFKSIQDLKIAKGLALSDILAEVHTIIQRV-KLPPE 223
+ D + D S I L +G ++L E+ ++ +
Sbjct: 259 IADVGYEDTFQEILDTAAAQDISDARDQITTLLDDEGFNGQELLRELLSVANTYPETYGT 318
Query: 222 VLVSLLIKMSDAEAR-LASGSSERVELAALIASFQIARDQVKLDTEVS 82
V L +++ A R LA G +R+ L L+ ++ + + E+S
Sbjct: 319 ANVIRLHRLAGAVDRDLAEGGEDRLHLTHLLTAWANGQSTLDETAEIS 366
>UniRef50_A1RWU6 Cluster: Replication factor C large subunit; n=1;
Thermofilum pendens Hrk 5|Rep: Replication factor C
large subunit - Thermofilum pendens (strain Hrk 5)
Length = 413
Score = 62.1 bits (144), Expect = 2e-08
Identities = 44/157 (28%), Positives = 81/157 (51%), Gaps = 4/157 (2%)
Frame = -2
Query: 879 TPQQFSSMVLELNAXDDRGIGIVRGQILSFASTRTIFKAGPKLIILDEADAM-TNDAQNA 703
T ++FS ++ELNA D R ++ ++L +TR++ K+I+LDE D + T +
Sbjct: 67 TAKEFSWELIELNASDVRTREALQQRLLGALNTRSVLGYSGKIILLDEVDGISTKEDAGG 126
Query: 702 LRRIIEKYTE-NVRFCIICN--YLGKIIPALQSRCTRFRFAPLKQDQIVPRLQEIVTTEG 532
L+ I+E + N + N + K+ P L+ C F + + I+ L+ I + EG
Sbjct: 127 LQAIVELIEKSNWPIVLTANDPWDPKLRP-LRDLCELIEFKKIGKRDIMKVLENICSKEG 185
Query: 531 VKMSEGGMKALLTLSGGDMRKVLNTLQSTWLAYRDVT 421
V+ S + A+ + GD+R +N LQS + + ++
Sbjct: 186 VECSREVLSAIADNAKGDLRAAINDLQSLAMGKKTIS 222
>UniRef50_Q8K983 Cluster: DNA polymerase III subunit gamma; n=4;
Enterobacteriaceae|Rep: DNA polymerase III subunit gamma
- Buchnera aphidicola subsp. Schizaphis graminum
Length = 363
Score = 62.1 bits (144), Expect = 2e-08
Identities = 50/206 (24%), Positives = 99/206 (48%), Gaps = 6/206 (2%)
Frame = -2
Query: 756 KLIILDEADAMTNDAQNALRRIIEKYTENVRFCIICNYLGKIIPALQSRCTRFRFAPLKQ 577
K+ ++DE ++ + NAL + +E+ ++++F + + KI ++SRC F+ L +
Sbjct: 121 KVYLIDEVHMLSRHSFNALLKTLEEPPQHIKFILATTDVEKIPKTIRSRCLHFKLNILSE 180
Query: 576 DQIVPRLQEIVTTEGVKMSEGGMKALLTLSGGDMRKVLNTLQ-STWLAYRDVTEDNVYTC 400
+ I L+ I+ G E +K + + G MR LN L+ + L+ ++ N
Sbjct: 181 EDIFNFLKHILKKGGNNFDEEALKIISDYANGSMRDALNLLEHAMHLSKNNINLKNTTEM 240
Query: 399 VGHPLRADIDSILNWLLNENDFSACFKSIQDLKIAK-GLALSDILAEVHTIIQRV---KL 232
+G P + + +LL E D + KI+K GL +IL E+ + + K
Sbjct: 241 LGIPNKKHAFLLTKFLL-EQDSKKMMCLLN--KISKIGLEWQNILIEMMRFLHHIAMLKS 297
Query: 231 PPEVLVSLLIKMSDAE-ARLASGSSE 157
P++ + IK ++ E ++A +S+
Sbjct: 298 YPKIWNQIFIKNNENEIKKIAENNSK 323
>UniRef50_Q7VRB7 Cluster: DNA polymerase III subunit gamma; n=2;
Candidatus Blochmannia|Rep: DNA polymerase III subunit
gamma - Blochmannia floridanus
Length = 541
Score = 61.7 bits (143), Expect = 2e-08
Identities = 44/177 (24%), Positives = 88/177 (49%), Gaps = 2/177 (1%)
Frame = -2
Query: 756 KLIILDEADAMTNDAQNALRRIIEKYTENVRFCIICNYLGKIIPALQSRCTRFRFAPLKQ 577
K+ ++DE ++ + NAL + +E+ ++V+F ++ K+ + SRC +F F PL
Sbjct: 121 KVYLIDEVHMLSRHSFNALLKTLEEPPKHVKFILVTTEYQKLPETILSRCLQFYFKPLNI 180
Query: 576 DQIVPRLQEIVTTEGVKM-SEGGMKALLTLSGGDMRKVLNTL-QSTWLAYRDVTEDNVYT 403
QIV +L+ I E + + +E ++ L + G +R LN L Q+ L ++T D + +
Sbjct: 181 IQIVTQLKYICNQENINIDTENSLEFLAYAARGSIRDALNLLEQAMILGKNNITIDVINS 240
Query: 402 CVGHPLRADIDSILNWLLNENDFSACFKSIQDLKIAKGLALSDILAEVHTIIQRVKL 232
+G S++ L N N + I + I G+ + E+ ++Q++ +
Sbjct: 241 MLGLLHIEHALSLIESLTNGN-INKIMNQIDNYSIL-GINWDYLFEEILIVLQKIAI 295
>UniRef50_Q74L01 Cluster: DNA polymerase III subunit gamma/tau; n=7;
Lactobacillus|Rep: DNA polymerase III subunit gamma/tau
- Lactobacillus johnsonii
Length = 602
Score = 61.7 bits (143), Expect = 2e-08
Identities = 49/202 (24%), Positives = 97/202 (48%), Gaps = 3/202 (1%)
Frame = -2
Query: 855 VLELNAXDDRGIGIVRG--QILSFASTRTIFKAGPKLIILDEADAMTNDAQNALRRIIEK 682
++E++A + G+ +R + +A T+ +K + I+DE ++ A NAL + +E+
Sbjct: 90 IIEIDAASNNGVDEIRDIRDKVKYAPTQGKYK----VYIIDEVHMLSMGAFNALLKTLEE 145
Query: 681 YTENVRFCIICNYLGKIIPALQSRCTRFRFAPLKQDQIVPRLQEIVTTEGVKMSEGGMKA 502
E+V F + L K+ + SR R+ F + Q ++ R+ I+ E + E ++
Sbjct: 146 PPEHVVFILATTELQKVPATIISRTQRYNFKRIDQHDLIARMTYILGQEKIDFEEKALEV 205
Query: 501 LLTLSGGDMRKVLNTLQSTWLAYRD-VTEDNVYTCVGHPLRADIDSILNWLLNENDFSAC 325
+ ++ G MR L+ L +D V ++ G+ + I+ +L LLN SA
Sbjct: 206 IAQVADGGMRDSLSILDQILSYDQDKVKYEDALRITGYAAQEKIEQVLLNLLN-GKTSAA 264
Query: 324 FKSIQDLKIAKGLALSDILAEV 259
+ + L + G + +IL E+
Sbjct: 265 LEIVHAL-LQDGASTKNILDEL 285
>UniRef50_A7CST5 Cluster: DNA polymerase III, subunits gamma and
tau; n=1; Opitutaceae bacterium TAV2|Rep: DNA polymerase
III, subunits gamma and tau - Opitutaceae bacterium TAV2
Length = 388
Score = 61.7 bits (143), Expect = 2e-08
Identities = 35/130 (26%), Positives = 66/130 (50%), Gaps = 2/130 (1%)
Frame = -2
Query: 855 VLELNAXDDRGIGIVRG--QILSFASTRTIFKAGPKLIILDEADAMTNDAQNALRRIIEK 682
V+E++ + + +R + +A T+ FK + I+DE ++ A NAL + +E+
Sbjct: 93 VIEIDGASNNSVDQIRDLRDDVRYAPTQGKFK----IYIIDEVHMLSTAAFNALLKTLEE 148
Query: 681 YTENVRFCIICNYLGKIIPALQSRCTRFRFAPLKQDQIVPRLQEIVTTEGVKMSEGGMKA 502
E+V+F + K++P + SRC RF P+ D I+ RL +I E + + +
Sbjct: 149 PPEHVKFVFATTDVQKVLPTILSRCQRFDLKPIPDDLIIKRLAQIGADEKINATPEALAC 208
Query: 501 LLTLSGGDMR 472
+ ++ G MR
Sbjct: 209 IARMADGGMR 218
>UniRef50_Q7RNS4 Cluster: Drosophila melanogaster BcDNA.LD06837,
putative; n=6; Plasmodium|Rep: Drosophila melanogaster
BcDNA.LD06837, putative - Plasmodium yoelii yoelii
Length = 363
Score = 61.7 bits (143), Expect = 2e-08
Identities = 39/140 (27%), Positives = 67/140 (47%), Gaps = 5/140 (3%)
Frame = -2
Query: 849 ELNAXDDRGIGIVRGQILSFASTRTIFKAGP--KLIILDEADAMTNDAQNALRRIIEKYT 676
EL D + + ++ S+ S+ + F P ++ + +A+ ++ AQ LRR +E Y
Sbjct: 108 ELGTKDKIIVQNIIKELCSYKSSASFFSKKPMYRIFVFKDAEFLSEGAQAGLRRTLETYI 167
Query: 675 ENVRFCIICNYLGKIIPALQSRCTRFRFAPLKQDQIVPRLQEIVTTEGVKMSEGG---MK 505
N R + +L KII L+SRC R +++I L+ I E V S K
Sbjct: 168 RNARVILHLEHLSKIIEPLKSRCICIRVPLPTEEEIFTVLKNICDNENVSSSYNSTNFFK 227
Query: 504 ALLTLSGGDMRKVLNTLQST 445
L+ + G ++RK + L+ T
Sbjct: 228 TLINIHGRNLRKCIMALEMT 247
>UniRef50_A3CTR4 Cluster: Replication factor C large subunit; n=1;
Methanoculleus marisnigri JR1|Rep: Replication factor C
large subunit - Methanoculleus marisnigri (strain ATCC
35101 / DSM 1498 / JR1)
Length = 454
Score = 61.7 bits (143), Expect = 2e-08
Identities = 43/153 (28%), Positives = 73/153 (47%), Gaps = 2/153 (1%)
Frame = -2
Query: 855 VLELNAXDDRGIGIVRGQILSFASTRTIFKAGPKLIILDEADAMTNDA-QNALRRIIEKY 679
V+ELNA D R + + ++T ++ A KLI+LDEAD + A + + I+E
Sbjct: 64 VVELNASDQRTKAALERVAGAGSTTASLSGASRKLILLDEADNLHGQADRGGAKAIVEII 123
Query: 678 TENVR-FCIICNYLGKIIPALQSRCTRFRFAPLKQDQIVPRLQEIVTTEGVKMSEGGMKA 502
+ +I N + L++ +F L+ IVPRL++I EGV +
Sbjct: 124 AAAQQPIILIANDYYSLTRELKAVTEPVQFRALQARSIVPRLRQICAAEGVACDPAALDD 183
Query: 501 LLTLSGGDMRKVLNTLQSTWLAYRDVTEDNVYT 403
+ +GGDMR +N L + + + +V+T
Sbjct: 184 IANRAGGDMRAAVNMLYAAAIGKEHLAAGDVHT 216
>UniRef50_A2SQR6 Cluster: Replication factor C large subunit; n=1;
Methanocorpusculum labreanum Z|Rep: Replication factor C
large subunit - Methanocorpusculum labreanum (strain
ATCC 43576 / DSM 4855 / Z)
Length = 476
Score = 61.7 bits (143), Expect = 2e-08
Identities = 40/136 (29%), Positives = 64/136 (47%), Gaps = 2/136 (1%)
Frame = -2
Query: 855 VLELNAXDDRGIGIVRGQILSFASTRTIFKAGPKLIILDEADAMTNDAQNALRRIIEKYT 676
VLELNA D R I+ + ++T ++F AG KLII+DE D + +A R I
Sbjct: 64 VLELNASDARTKTIIERVAGNSSTTTSLFGAGRKLIIIDEVDNLEGNADRGGARAIADIL 123
Query: 675 ENVR--FCIICNYLGKIIPALQSRCTRFRFAPLKQDQIVPRLQEIVTTEGVKMSEGGMKA 502
+ + +I N + +++ C F + + R++EI E + E + A
Sbjct: 124 KEAKQPIVLIANDAYGVSDSIRRLCDPVPFRAIGVSTLQKRMKEICRFEDIACGEDALSA 183
Query: 501 LLTLSGGDMRKVLNTL 454
+ S GDMR +N L
Sbjct: 184 IAESSAGDMRTAVNML 199
>UniRef50_A3ISF6 Cluster: DNA-directed DNA polymerase; n=3;
Cyanobacteria|Rep: DNA-directed DNA polymerase -
Cyanothece sp. CCY 0110
Length = 692
Score = 61.3 bits (142), Expect = 3e-08
Identities = 42/184 (22%), Positives = 88/184 (47%)
Frame = -2
Query: 855 VLELNAXDDRGIGIVRGQILSFASTRTIFKAGPKLIILDEADAMTNDAQNALRRIIEKYT 676
V+E++A + G+ +R +I+ + + + K+ ++DE ++ A NAL + +E+
Sbjct: 99 VIEIDAASNTGVDNIR-EIIERSQFAPV-QCRYKVYVIDECHMLSVAAFNALLKTLEEPP 156
Query: 675 ENVRFCIICNYLGKIIPALQSRCTRFRFAPLKQDQIVPRLQEIVTTEGVKMSEGGMKALL 496
E V F + +++P + SRC RF + + + +V L I E +++ + +
Sbjct: 157 ERVIFVLATTDPQRVLPTILSRCQRFDYRRIPLEAMVNHLTIIAQKENIEIETEALILVA 216
Query: 495 TLSGGDMRKVLNTLQSTWLAYRDVTEDNVYTCVGHPLRADIDSILNWLLNENDFSACFKS 316
++ G +R + L L +T + V+ VG D+ S+L +N N+ +S
Sbjct: 217 QIANGGLRDAESLLDQLSLLSGSITSEKVWDLVGAVPEKDLLSLLQ-AINSNNPEIVIES 275
Query: 315 IQDL 304
+ L
Sbjct: 276 CRKL 279
>UniRef50_Q56C06 Cluster: Gp44 clamp-loader subunit; n=1;
Enterobacteria phage RB43|Rep: Gp44 clamp-loader subunit
- Enterobacteria phage RB43
Length = 332
Score = 61.3 bits (142), Expect = 3e-08
Identities = 42/134 (31%), Positives = 69/134 (51%), Gaps = 8/134 (5%)
Frame = -2
Query: 831 DRGIGIVRGQILSFASTRTIFKAGPKLIILDEADAM-TNDAQNALRRIIEKYTENVRFCI 655
D G+ +R + FAS+ T K G K+I++DE D +AQ +R IE Y++NV +
Sbjct: 93 DCGVNFIRSDLDRFASSMTQKKGG-KIILIDEFDRPGMAEAQKHMRSFIEAYSKNVTVIV 151
Query: 654 ICNYLGKIIPALQSRCTRFRF-APLKQD------QIVPRLQEIVTTEGVKMSEGGMKALL 496
N + I PAL SRC +F +P K++ Q++ R I+ EG++ + + A +
Sbjct: 152 SANNINGIHPALLSRCPPIKFGSPSKEERIDLMKQMIKRCFGILEIEGIEYDQQVIAAFV 211
Query: 495 TLSGGDMRKVLNTL 454
D R ++ L
Sbjct: 212 KKHYPDARSIVKAL 225
>UniRef50_Q7WMF3 Cluster: DNA polymerase III subunit Tau; n=4;
Bordetella|Rep: DNA polymerase III subunit Tau -
Bordetella bronchiseptica (Alcaligenes bronchisepticus)
Length = 743
Score = 60.9 bits (141), Expect = 4e-08
Identities = 53/215 (24%), Positives = 106/215 (49%), Gaps = 4/215 (1%)
Frame = -2
Query: 852 LELNAXDDRGIGIVRGQILSFASTRTIFKAGP---KLIILDEADAMTNDAQNALRRIIEK 682
LEL+A +RG+ + Q+L A ++ G K+ ++DE +T A NA+ + +E+
Sbjct: 136 LELDAASNRGVEEMT-QLLEQA----VYAPGAGRFKVYMIDEVHMLTGHAFNAMLKTLEE 190
Query: 681 YTENVRFCIICNYLGKIIPALQSRCTRFRFAPLKQDQIVPRLQEIVTTEGVKMSEGGMKA 502
+V+F + KI + SRC +F + D IV LQ ++ E + ++
Sbjct: 191 PPPHVKFILATTDPQKIPVTVLSRCLQFNLKQMPPDAIVGHLQAVLGEEQIGFEVPALRL 250
Query: 501 LLTLSGGDMRKVLN-TLQSTWLAYRDVTEDNVYTCVGHPLRADIDSILNWLLNENDFSAC 325
+ +GG MR L+ T Q+ + +++E+ V +G + + +L+ L + + +A
Sbjct: 251 IGQAAGGSMRDALSLTDQAIAYSAGNLSEEAVRGMLGTIDQRHLVRLLDALASGD--AAG 308
Query: 324 FKSIQDLKIAKGLALSDILAEVHTIIQRVKLPPEV 220
++ D +GL+ + LA++ ++ RV + V
Sbjct: 309 VLAVADELAVRGLSYAGALADLAVLLSRVAIEQRV 343
>UniRef50_A4M5U6 Cluster: DNA polymerase III, subunits gamma and
tau; n=1; Petrotoga mobilis SJ95|Rep: DNA polymerase
III, subunits gamma and tau - Petrotoga mobilis SJ95
Length = 467
Score = 60.9 bits (141), Expect = 4e-08
Identities = 38/135 (28%), Positives = 72/135 (53%)
Frame = -2
Query: 855 VLELNAXDDRGIGIVRGQILSFASTRTIFKAGPKLIILDEADAMTNDAQNALRRIIEKYT 676
V+E++A +RGI +R I ++ R ++ K+ I+DE +T +A NAL + +E+
Sbjct: 89 VIEMDAASNRGIDEIRN-IRDSSNYRPVY-GKYKVYIIDEFHMLTREAFNALLKTLEEPP 146
Query: 675 ENVRFCIICNYLGKIIPALQSRCTRFRFAPLKQDQIVPRLQEIVTTEGVKMSEGGMKALL 496
+V F + L K+ + SR F L Q++IV L+ I ++EG++ ++ +
Sbjct: 147 SHVIFILATTNLEKVPDTIISRAQIINFKNLGQNEIVEGLKNIASSEGIEYELDALEIIA 206
Query: 495 TLSGGDMRKVLNTLQ 451
+ G MR ++ L+
Sbjct: 207 KRAKGGMRDAISMLE 221
>UniRef50_A4RWV3 Cluster: Predicted protein; n=8; Viridiplantae|Rep:
Predicted protein - Ostreococcus lucimarinus CCE9901
Length = 355
Score = 60.9 bits (141), Expect = 4e-08
Identities = 32/105 (30%), Positives = 58/105 (55%)
Frame = -2
Query: 762 GPKLIILDEADAMTNDAQNALRRIIEKYTENVRFCIICNYLGKIIPALQSRCTRFRFAPL 583
G K+++L E D ++ +AQ LRR +EKY+ + R +I +++ ALQSRC R
Sbjct: 131 GFKVLVLTEVDRLSREAQYGLRRTMEKYSASCRLFLIAERPSRVMDALQSRCLPVRVPGP 190
Query: 582 KQDQIVPRLQEIVTTEGVKMSEGGMKALLTLSGGDMRKVLNTLQS 448
+ ++I L ++ E +++ + T SG +MR+ L L++
Sbjct: 191 RVEEIENLLHDVAKKEKLELPPELATRVATASGRNMRRALLALET 235
>UniRef50_P09122 Cluster: DNA polymerase III subunit gamma/tau;
n=16; Bacillaceae|Rep: DNA polymerase III subunit
gamma/tau - Bacillus subtilis
Length = 563
Score = 60.9 bits (141), Expect = 4e-08
Identities = 40/138 (28%), Positives = 71/138 (51%), Gaps = 2/138 (1%)
Frame = -2
Query: 861 SMVLELNAXDDRGIGIVRG--QILSFASTRTIFKAGPKLIILDEADAMTNDAQNALRRII 688
S V+E++A + G+ +R + FA + +K + I+DE ++ A NAL + +
Sbjct: 88 SDVIEIDAASNNGVDEIRDIRDKVKFAPSAVTYK----VYIIDEVHMLSIGAFNALLKTL 143
Query: 687 EKYTENVRFCIICNYLGKIIPALQSRCTRFRFAPLKQDQIVPRLQEIVTTEGVKMSEGGM 508
E+ E+ F + KI + SRC RF F + IV R+ +IV E +++ EG +
Sbjct: 144 EEPPEHCIFILATTEPHKIPLTIISRCQRFDFKRITSQAIVGRMNKIVDAEQLQVEEGSL 203
Query: 507 KALLTLSGGDMRKVLNTL 454
+ + + + G MR L+ L
Sbjct: 204 EIIASAAHGGMRDALSLL 221
>UniRef50_A0NIM4 Cluster: DNA-dependent DNA polymerase III,
gamma/tau subunits; n=2; Oenococcus oeni|Rep:
DNA-dependent DNA polymerase III, gamma/tau subunits -
Oenococcus oeni ATCC BAA-1163
Length = 608
Score = 60.5 bits (140), Expect = 6e-08
Identities = 54/226 (23%), Positives = 102/226 (45%), Gaps = 5/226 (2%)
Frame = -2
Query: 879 TPQQFSSMVLELNAXDDRGIGIVRGQILSFASTRTIFKAGPKLIILDEADAMTNDAQNAL 700
T ++ S ++E++A + G+ +R L A+ + K+ I+DE ++ A NAL
Sbjct: 82 TDRESFSDIIEIDAASNNGVDEIRN--LRDAANYAPIEYQFKIYIIDEVHMLSTGAFNAL 139
Query: 699 RRIIEKYTENVRFCIICNYLGKIIPALQSRCTRFRFAPLKQDQIVPRLQEIVTTEGVKMS 520
+ IE+ V+F + KI + SR RF F + DQIV RL+ ++ + +
Sbjct: 140 LKTIEEPPAQVKFILATTEPQKIPATILSRVQRFDFHRIDVDQIVKRLEFVLDDQKIAYD 199
Query: 519 EGGMKALLTLSGGDMRKVLNTLQSTWLAYRD--VTEDNVYTCVG-HPLRADIDSILNWLL 349
+K + S G +R L+ L + V D+V+ G P+ I + + L
Sbjct: 200 PAALKIVANASDGGLRDALSILDQAVAITKTGRVELDDVFKITGTSPIDQQIGFLQHVL- 258
Query: 348 NENDFSACFKSIQDLKI--AKGLALSDILAEVHTIIQRVKLPPEVL 217
E + F+ I L + + ++ L + + +K+ PE++
Sbjct: 259 -EKQTAKAFEDIHKLLLDGKDPIRFAEDLLVLLKNLMLIKIAPELV 303
>UniRef50_Q6YPV8 Cluster: DNA polymerase III, gamma/tau subunit;
n=3; Candidatus Phytoplasma asteris|Rep: DNA polymerase
III, gamma/tau subunit - Onion yellows phytoplasma
Length = 482
Score = 60.1 bits (139), Expect = 7e-08
Identities = 43/145 (29%), Positives = 71/145 (48%), Gaps = 2/145 (1%)
Frame = -2
Query: 756 KLIILDEADAMTNDAQNALRRIIEKYTENVRFCIICNYLGKIIPALQSRCTRFRFAPLKQ 577
K+ I+DE +T +A NAL +I+E+ E+V F +I + KI + SR F F L
Sbjct: 106 KVYIIDEVHVLTPNAFNALLKILEEPPEHVVFILITTEIYKIPDTIFSRAQSFAFENLNL 165
Query: 576 DQIVPRLQEIVTTEGVKMSEGGMKALLTLSGGDMRKVLNTLQSTWLAYRD--VTEDNVYT 403
I +L +I E + ++E +K++ S G MR L+ L AY++ +T ++V
Sbjct: 166 KNITAQLTKIAALENMFITEDAIKSIACHSEGGMRNALSLLDQV-SAYQNNLITSEDVAN 224
Query: 402 CVGHPLRADIDSILNWLLNENDFSA 328
G + I + LL + A
Sbjct: 225 IKGTVSASIIKKLFQNLLKKEAIKA 249
>UniRef50_Q6G4V0 Cluster: DNA polymerase III subunit tau; n=6;
Rhizobiales|Rep: DNA polymerase III subunit tau -
Bartonella henselae (Rochalimaea henselae)
Length = 646
Score = 60.1 bits (139), Expect = 7e-08
Identities = 55/249 (22%), Positives = 116/249 (46%), Gaps = 3/249 (1%)
Frame = -2
Query: 855 VLELNAXDDRGIGIVRGQILSFASTRTIFKAGPKLIILDEADAMTNDAQNALRRIIEKYT 676
V+E++A GI +R +I+ R + A K+ I+DE ++ A N L + +E+
Sbjct: 101 VIEMDAASHTGIDDIR-EIIEQIRYRPV-SARYKVYIIDEVHMLSTQAFNGLLKTLEEPP 158
Query: 675 ENVRFCIICNYLGKIIPALQSRCTRFRFAPLKQDQIVPRLQEIVTTEGVKMSEGGMKALL 496
+V+F + K+ + SRC RF ++ + L++I E V++ + + +
Sbjct: 159 PHVKFIFATTEIRKVPITILSRCQRFDLRRIESAVLSAHLRQIAQHENVEVEDQALSMIA 218
Query: 495 TLSGGDMRKVLNTL-QSTWLAYRDVTEDNVYTCVGHPLRADIDSILNWLLNENDFSAC-- 325
+ G R L+ Q+ + ++ V +G +A I + +L+ N +A
Sbjct: 219 RAAEGSARDALSIFDQAIAHSNGKISAVTVRAMLGLADQARIIDLFEFLMKGNVVNALHE 278
Query: 324 FKSIQDLKIAKGLALSDILAEVHTIIQRVKLPPEVLVSLLIKMSDAEARLASGSSERVEL 145
+S D A L + LA+ + ++ R++ PE+L L +++ E + S+++ +
Sbjct: 279 LRSQYDAG-ADPLTILTELADFNHLVTRLRFTPEILEDL--SLTEDERLRSLDFSKKLSV 335
Query: 144 AALIASFQI 118
L ++Q+
Sbjct: 336 PVLSRNWQM 344
>UniRef50_A6QBX8 Cluster: DNA polymerase III, gamma/tau subunits;
n=1; Sulfurovum sp. NBC37-1|Rep: DNA polymerase III,
gamma/tau subunits - Sulfurovum sp. (strain NBC37-1)
Length = 666
Score = 60.1 bits (139), Expect = 7e-08
Identities = 57/263 (21%), Positives = 117/263 (44%), Gaps = 6/263 (2%)
Frame = -2
Query: 855 VLELNAXDDRGIGIVRGQILSFASTRTIFKAGPKLIILDEADAMTNDAQNALRRIIEKYT 676
++E++A +RGI ++ ++ + A K+ I+DE +T A NAL + +E+
Sbjct: 89 IIEMDAASNRGIDDIK-DLIEHTKYKPS-SARYKIFIIDEVHMLTTQAFNALLKTLEEPP 146
Query: 675 ENVRFCIICNYLGKIIPALQSRCTRFRFAPLKQDQIVPRLQEIVTTEGVKMSEGGMKALL 496
+ V+F + K+ + SR FRF + Q+ ++ L+ I+ E ++ + ++ +
Sbjct: 147 DFVKFILATTDPLKLPATILSRTQHFRFKKIPQNLVLSHLEHIMNLEKIEYEKEALEIIA 206
Query: 495 TLSGGDMRKVLNTLQSTWLAYRDVTEDNVYTCVGHPLRADIDSILNWLLNENDFSACFKS 316
G +R L L + ++ + V T G L S+L LL K
Sbjct: 207 RSGAGSLRDSLTLLDQAIVYSKNFVD--VGTVTG-MLGIIEPSLLEALLGNIVKKDTTKI 263
Query: 315 IQDLKIAKGLALSDILAEVHTIIQRV------KLPPEVLVSLLIKMSDAEARLASGSSER 154
++ +K+A IL E+ ++ + KL P ++ ++++++ LA GS
Sbjct: 264 LEFIKLASDYEAEMILDELTLYLKELLLTGSGKLNPMIIERFFRVIAESKSLLALGSDGE 323
Query: 153 VELAALIASFQIARDQVKLDTEV 85
L+ + A + +DT +
Sbjct: 324 FVLSLALFKMMEALEIKDIDTMI 346
>UniRef50_A0NSR3 Cluster: DNA polymerase III subunit delta'; n=1;
Stappia aggregata IAM 12614|Rep: DNA polymerase III
subunit delta' - Stappia aggregata IAM 12614
Length = 353
Score = 60.1 bits (139), Expect = 7e-08
Identities = 34/121 (28%), Positives = 63/121 (52%)
Frame = -2
Query: 798 LSFASTRTIFKAGPKLIILDEADAMTNDAQNALRRIIEKYTENVRFCIICNYLGKIIPAL 619
+SF T KA ++ I+D AD M + NAL +I+E+ + F ++ + G+++P +
Sbjct: 136 VSFFGTTASAKAW-RICIVDAADDMNISSANALLKILEEPPQRCLFLVLSHAPGRLLPTI 194
Query: 618 QSRCTRFRFAPLKQDQIVPRLQEIVTTEGVKMSEGGMKALLTLSGGDMRKVLNTLQSTWL 439
+SRC R PL ++++ LQ++ + G S ++ L + G +R + L L
Sbjct: 195 RSRCRRLDLDPLTEEEVAQGLQDL--SGGSVASSDDLRELALTADGSLRSAITLLSGDGL 252
Query: 438 A 436
A
Sbjct: 253 A 253
>UniRef50_Q8DJU0 Cluster: DNA polymerase III gamma and tau subunits;
n=4; Cyanobacteria|Rep: DNA polymerase III gamma and tau
subunits - Synechococcus elongatus (Thermosynechococcus
elongatus)
Length = 603
Score = 59.7 bits (138), Expect = 1e-07
Identities = 47/212 (22%), Positives = 94/212 (44%), Gaps = 1/212 (0%)
Frame = -2
Query: 855 VLELNAXDDRGIGIVRGQILSFASTRTIFKAGPKLIILDEADAMTNDAQNALRRIIEKYT 676
V+E++A G+ +R +++ A + + K+ ++DE ++ A NAL + +E+
Sbjct: 92 VIEIDAASHTGVDNIR-ELIEKAQFAPV-QCRYKVYVIDECHMLSVSAFNALLKTLEEPP 149
Query: 675 ENVRFCIICNYLGKIIPALQSRCTRFRFAPLKQDQIVPRLQEIVTTEGVKMSEGGMKALL 496
V F + +++P + SRC RF F + ++V LQ I E + + + +
Sbjct: 150 PQVVFILATTDPQRVLPTIISRCQRFDFRRIPLGEMVAHLQNIADKEQIDIEPEALTLVA 209
Query: 495 TLSGGDMRKVLNTLQSTWLAYRDVTEDNVYTCVGHPLRADIDSILNWLLNENDFSACFKS 316
LS G +R + L L +T + V+ G D+ +L + + S +
Sbjct: 210 QLSQGGLRDAESLLDQLSLYPERITVEQVWQLTGAVPEQDLRQLLGAIARRDAVSVLEHT 269
Query: 315 IQDLKIAKG-LALSDILAEVHTIIQRVKLPPE 223
Q L+ + L + LA ++ + K P+
Sbjct: 270 RQLLERGRDPLTILQNLASLYRDLLLAKTVPQ 301
>UniRef50_Q3A8S0 Cluster: Putative DNA polymerase III, gamma/tau
subunits; n=1; Carboxydothermus hydrogenoformans
Z-2901|Rep: Putative DNA polymerase III, gamma/tau
subunits - Carboxydothermus hydrogenoformans (strain
Z-2901 / DSM 6008)
Length = 511
Score = 59.7 bits (138), Expect = 1e-07
Identities = 51/207 (24%), Positives = 92/207 (44%)
Frame = -2
Query: 855 VLELNAXDDRGIGIVRGQILSFASTRTIFKAGPKLIILDEADAMTNDAQNALRRIIEKYT 676
V E++A +RGI +R S K K+ I+DE +TN+A NAL + +E+
Sbjct: 89 VFEIDAASNRGIDEIRELRESIKLVPAQGKY--KVYIIDEVHMLTNEAFNALLKTLEEPP 146
Query: 675 ENVRFCIICNYLGKIIPALQSRCTRFRFAPLKQDQIVPRLQEIVTTEGVKMSEGGMKALL 496
E+V F + K+ + SRC RF F + I L+ I E ++ + +
Sbjct: 147 EHVIFILATTEFNKVPVTIVSRCQRFDFKRISTKTIWEHLKNIAEKEKLQYEAEALHLIA 206
Query: 495 TLSGGDMRKVLNTLQSTWLAYRDVTEDNVYTCVGHPLRADIDSILNWLLNENDFSACFKS 316
S G +R L+ + + +T ++ +G I +++ + EN+
Sbjct: 207 EASEGGLRDALSLMDQILVFNPKITVEDTLKVLGFVSWRKILELIS-AIRENNQLKIINE 265
Query: 315 IQDLKIAKGLALSDILAEVHTIIQRVK 235
I ++ + +GL D+ V I+Q V+
Sbjct: 266 IAEV-VERGL---DVKLFVQQILQYVR 288
>UniRef50_Q1N199 Cluster: DNA polymerase III subunits gamma and tau;
n=2; Gammaproteobacteria|Rep: DNA polymerase III
subunits gamma and tau - Oceanobacter sp. RED65
Length = 658
Score = 59.7 bits (138), Expect = 1e-07
Identities = 45/180 (25%), Positives = 85/180 (47%), Gaps = 1/180 (0%)
Frame = -2
Query: 756 KLIILDEADAMTNDAQNALRRIIEKYTENVRFCIICNYLGKIIPALQSRCTRFRFAPLKQ 577
K+ ++DE ++N + NAL + +E+ +V+F + K+ + SRC +F +
Sbjct: 121 KVYLIDEVHMLSNSSFNALLKTLEEPPPHVKFLLATTDPQKLPATILSRCLQFSLKNMTP 180
Query: 576 DQIVPRLQEIVTTEGVKMSEGGMKALLTLSGGDMRKVLN-TLQSTWLAYRDVTEDNVYTC 400
++IV LQ ++ E V+ E G+ L + G MR L+ T Q+ + E +V
Sbjct: 181 ERIVGYLQNVLAQESVEFEEPGLWLLGRAAEGSMRDALSLTDQAISFGQGVIKEQDVAAM 240
Query: 399 VGHPLRADIDSILNWLLNENDFSACFKSIQDLKIAKGLALSDILAEVHTIIQRVKLPPEV 220
+G R + L L END + + + + +++LA++ +I R+ L V
Sbjct: 241 LGTVDRGRVFQ-LAIALAENDAAQALALVAQM-AEHAVDFNNLLADLINLIHRIALAQAV 298
>UniRef50_Q7NK69 Cluster: DNA polymerase III gamma and tau subunits;
n=1; Gloeobacter violaceus|Rep: DNA polymerase III gamma
and tau subunits - Gloeobacter violaceus
Length = 632
Score = 59.3 bits (137), Expect = 1e-07
Identities = 36/154 (23%), Positives = 76/154 (49%)
Frame = -2
Query: 855 VLELNAXDDRGIGIVRGQILSFASTRTIFKAGPKLIILDEADAMTNDAQNALRRIIEKYT 676
V+E++A + G+ +R +++ A + ++ K+ ILDE +++ A N L + +E+
Sbjct: 90 VIEIDAASNTGVDNIR-ELIERAQFAPV-QSRQKVYILDEVHMLSSAAFNCLLKTLEEPP 147
Query: 675 ENVRFCIICNYLGKIIPALQSRCTRFRFAPLKQDQIVPRLQEIVTTEGVKMSEGGMKALL 496
+V F + K++P + SRC RF F + +V L+EI E + + ++ +
Sbjct: 148 AHVTFVLATTDPQKVLPTVISRCQRFDFRRIPLTDMVKHLEEIAWKEDIDIEHEAVELVA 207
Query: 495 TLSGGDMRKVLNTLQSTWLAYRDVTEDNVYTCVG 394
++ G +R + L L + + ++ VG
Sbjct: 208 QIAQGGLRDAESLLDQLALLEGTIGAERIWQLVG 241
>UniRef50_Q21L32 Cluster: DNA polymerase III, subunits gamma and
tau; n=3; Gammaproteobacteria|Rep: DNA polymerase III,
subunits gamma and tau - Saccharophagus degradans
(strain 2-40 / ATCC 43961 / DSM 17024)
Length = 690
Score = 59.3 bits (137), Expect = 1e-07
Identities = 46/177 (25%), Positives = 86/177 (48%), Gaps = 2/177 (1%)
Frame = -2
Query: 756 KLIILDEADAMTNDAQNALRRIIEKYTENVRFCIICNYLGKIIPALQSRCTRFRFAPLKQ 577
K+ ++DE ++N + NAL + +E+ E+V+F + K+ + SRC +F +
Sbjct: 121 KIYLIDEVHMLSNHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQFNLKNMSP 180
Query: 576 DQIVPRLQEIVTTEGVKMSEGGMKALLTLSGGDMRKVLN-TLQSTWLAYRDVTEDNVYTC 400
++IV L I+ E + E + L + G MR L+ T QS V+ED V +
Sbjct: 181 ERIVGHLSHILEKEVIPFEESALWQLARSADGSMRDALSLTDQSISFGGGKVSEDEVASM 240
Query: 399 VGHPLRADIDSILNWLLNENDFSACFKSIQDLKIAKGLALSDI-LAEVHTIIQRVKL 232
+G + +++ L+ D S S+ K A+ D+ LA++ T++ R+ +
Sbjct: 241 LGTIDHKLVQNLVGALI-AGDGSQILTSV--AKFAEHAPDFDVALADLITLLHRIAI 294
>UniRef50_Q0B0W5 Cluster: DNA-directed DNA polymerase; n=1;
Syntrophomonas wolfei subsp. wolfei str. Goettingen|Rep:
DNA-directed DNA polymerase - Syntrophomonas wolfei
subsp. wolfei (strain Goettingen)
Length = 499
Score = 59.3 bits (137), Expect = 1e-07
Identities = 39/139 (28%), Positives = 66/139 (47%), Gaps = 1/139 (0%)
Frame = -2
Query: 855 VLELNAXDDRGIGIVRGQILSFASTRTIFKAGP-KLIILDEADAMTNDAQNALRRIIEKY 679
V+E++A +RGI +R R + G K+ I+DE +T +A NAL + IE+
Sbjct: 90 VIEIDAASNRGIDEIRDLR---EKVRVLPAQGKNKVYIIDEVHMLTTEAFNALLKTIEEP 146
Query: 678 TENVRFCIICNYLGKIIPALQSRCTRFRFAPLKQDQIVPRLQEIVTTEGVKMSEGGMKAL 499
+ V F + KI ++SRC + F L +I RL ++ +G+ + + L
Sbjct: 147 PDAVIFILATTESHKIPATIRSRCQVYNFRRLTTAEITERLSDVAANDGIILEPEALLLL 206
Query: 498 LTLSGGDMRKVLNTLQSTW 442
+ G MR L+ L +
Sbjct: 207 ARRANGGMRDALSMLDQIY 225
>UniRef50_Q9PQU7 Cluster: Conserved hypothetical ATP/GTP-binding
protein; n=1; Ureaplasma parvum|Rep: Conserved
hypothetical ATP/GTP-binding protein - Ureaplasma parvum
(Ureaplasma urealyticum biotype 1)
Length = 408
Score = 58.8 bits (136), Expect = 2e-07
Identities = 37/115 (32%), Positives = 55/115 (47%)
Frame = -2
Query: 753 LIILDEADAMTNDAQNALRRIIEKYTENVRFCIICNYLGKIIPALQSRCTRFRFAPLKQD 574
+II+DE + D Q+ L IIE + N I PAL+SRC PL
Sbjct: 95 IIIIDEIHRLNKDKQDILLPIIEANKIKLFATTTENPFFVINPALRSRCQLLSLKPLTSS 154
Query: 573 QIVPRLQEIVTTEGVKMSEGGMKALLTLSGGDMRKVLNTLQSTWLAYRDVTEDNV 409
QI R++ ++ E V L+ + GD+R V+NTL+ +L Y++ D V
Sbjct: 155 QISERIKTLINVEEV-FEPQAFNLLINKTNGDLRAVINTLEIIYLLYKEHKVDYV 208
>UniRef50_Q73G99 Cluster: DNA polymerase III, gamma and tau
subunits; n=14; Wolbachia|Rep: DNA polymerase III, gamma
and tau subunits - Wolbachia pipientis wMel
Length = 533
Score = 58.8 bits (136), Expect = 2e-07
Identities = 43/181 (23%), Positives = 85/181 (46%), Gaps = 2/181 (1%)
Frame = -2
Query: 756 KLIILDEADAMTNDAQNALRRIIEKYTENVRFCIICNYLGKIIPALQSRCTRFRFAPLKQ 577
K+ I+DE +++ A NAL + +E+ +V+F + + KI + +RC RF +
Sbjct: 118 KVYIIDEVHMLSSSAFNALLKTLEEPPSSVKFILATTEIKKIPITIIARCQRFDLHNIPV 177
Query: 576 DQIVPRLQEIVTTEGVKMSEGGMKALLTLSGGDMRKVLNTLQSTWLAYRD--VTEDNVYT 403
+IV RL ++ E + +G ++ + SG MR L + L +D ++ NV
Sbjct: 178 AKIVERLNDVAQKESYSIEKGALELIARHSGNSMRNALFLMNQAVLYSKDGAISTKNVTD 237
Query: 402 CVGHPLRADIDSILNWLLNENDFSACFKSIQDLKIAKGLALSDILAEVHTIIQRVKLPPE 223
+G + I +L +L + A + +K A L++ + L + ++ R + E
Sbjct: 238 ILGLVDKDIIFDLLGAILEGDLQKALSVFDKAVKTANPLSIFEGLLQTIQLVCRFLITKE 297
Query: 222 V 220
+
Sbjct: 298 I 298
>UniRef50_Q3IKN4 Cluster: Putative DnaX, DNA polymerase III,
gamma/tau subunits; n=2; Alteromonadales|Rep: Putative
DnaX, DNA polymerase III, gamma/tau subunits -
Pseudoalteromonas haloplanktis (strain TAC 125)
Length = 842
Score = 58.8 bits (136), Expect = 2e-07
Identities = 46/181 (25%), Positives = 87/181 (48%), Gaps = 3/181 (1%)
Frame = -2
Query: 756 KLIILDEADAMTNDAQNALRRIIEKYTENVRFCIICNYLGKIIPALQSRCTRFRFAPLKQ 577
K+ ++DE ++ + NAL + +E+ E+V+F + K+ + SRC +F L Q
Sbjct: 121 KVYLIDEVHMLSKHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQFNLNALSQ 180
Query: 576 DQIVPRLQEIVTTEGVKMSEGGMKALLTLSGGDMRKVLN-TLQSTWLAYRDVTEDNVYTC 400
+I +L+ ++T E + + ++ + + G MR L+ T Q+ D+ V T
Sbjct: 181 SEIKTQLEHVLTHEKLNFDDDALRIIAKAADGSMRDALSLTDQAIAQTNGDINNQAVQTM 240
Query: 399 VGHPLRADIDSILNWLLNENDFSACFKSIQDL--KIAKGLALSDILAEVHTIIQRVKLPP 226
+G S+L LL + D +A K + ++ + +AL D L + + Q +L P
Sbjct: 241 LGLMDTHYSQSLLAALLAQ-DGAALMKEVANVASRNPNYVALLDDLIALTHLTQLSQLVP 299
Query: 225 E 223
E
Sbjct: 300 E 300
>UniRef50_Q2GDS0 Cluster: Putative DNA polymerase III, gamma/tau
subunit; n=1; Neorickettsia sennetsu str. Miyayama|Rep:
Putative DNA polymerase III, gamma/tau subunit -
Neorickettsia sennetsu (strain Miyayama)
Length = 396
Score = 58.8 bits (136), Expect = 2e-07
Identities = 35/139 (25%), Positives = 73/139 (52%)
Frame = -2
Query: 855 VLELNAXDDRGIGIVRGQILSFASTRTIFKAGPKLIILDEADAMTNDAQNALRRIIEKYT 676
+LE++A + G+ VR ++ A + + K I+DE ++ A +AL +++E+
Sbjct: 90 ILEIDAASNTGVEDVR-MLIEGALYKPLLSKY-KSYIVDEVHMLSQSAFSALLKLLEEPP 147
Query: 675 ENVRFCIICNYLGKIIPALQSRCTRFRFAPLKQDQIVPRLQEIVTTEGVKMSEGGMKALL 496
++V+F + L KI + SRC +R + L + I RL ++ E +++++ +K +
Sbjct: 148 QHVKFFLATTELQKIPATIISRCQHYRLSRLSRVVIAERLTQVAEKEQIEITQDAIKFIA 207
Query: 495 TLSGGDMRKVLNTLQSTWL 439
+ G +R L+ L+ L
Sbjct: 208 EKADGSLRDALSLLEQVTL 226
>UniRef50_Q7CZ44 Cluster: AGR_C_2759p; n=6; Rhizobiaceae|Rep:
AGR_C_2759p - Agrobacterium tumefaciens (strain C58 /
ATCC 33970)
Length = 350
Score = 58.8 bits (136), Expect = 2e-07
Identities = 31/102 (30%), Positives = 57/102 (55%), Gaps = 1/102 (0%)
Frame = -2
Query: 756 KLIILDEADAMTNDAQNALRRIIEKYTENVRFCIICNYLGKIIPALQSRCTRFRFAPLKQ 577
+++I+D AD + +A NA+ +I+E+ + F ++ + GK++P ++SRC R PL
Sbjct: 147 RIVIIDPADDLNRNAANAILKILEEPPKRAMFLVLSHAPGKLLPTIRSRCMPLRLLPLSD 206
Query: 576 DQIVPRLQEI-VTTEGVKMSEGGMKALLTLSGGDMRKVLNTL 454
+V L ++ ++ EG K ALLT S G + + L +
Sbjct: 207 AAMVQALDQLDISPEGEKRD-----ALLTASKGSVAQALKLM 243
>UniRef50_Q022F8 Cluster: DNA polymerase III, subunits gamma and
tau; n=1; Solibacter usitatus Ellin6076|Rep: DNA
polymerase III, subunits gamma and tau - Solibacter
usitatus (strain Ellin6076)
Length = 568
Score = 58.8 bits (136), Expect = 2e-07
Identities = 40/136 (29%), Positives = 66/136 (48%), Gaps = 2/136 (1%)
Frame = -2
Query: 855 VLELNAXDDRGIGIVRG--QILSFASTRTIFKAGPKLIILDEADAMTNDAQNALRRIIEK 682
V+E++A +RGI +R + + + R +K + I+DEA +TN+A NAL + IE+
Sbjct: 89 VIEIDAASNRGINEMRELRENVRYQPARDRYK----IFIIDEAHQITNEAFNALLKTIEE 144
Query: 681 YTENVRFCIICNYLGKIIPALQSRCTRFRFAPLKQDQIVPRLQEIVTTEGVKMSEGGMKA 502
E F + KI + SRC F F + ++V R+ I EG++ +
Sbjct: 145 PPEWAVFVLCTTESHKIPATIASRCQHFSFRSVDFQELVDRMSWICGQEGIEADAEALAV 204
Query: 501 LLTLSGGDMRKVLNTL 454
L G +R L+ L
Sbjct: 205 LAAAGEGSVRDSLSAL 220
>UniRef50_A7GZC8 Cluster: Protein EbsC; n=13; Campylobacter|Rep:
Protein EbsC - Campylobacter curvus 525.92
Length = 553
Score = 58.4 bits (135), Expect = 2e-07
Identities = 41/170 (24%), Positives = 84/170 (49%), Gaps = 1/170 (0%)
Frame = -2
Query: 855 VLELNAXDDRGIGIVRGQILSFASTRTIFKAGPKLIILDEADAMTNDAQNALRRIIEKYT 676
++E++A R I +R +++ + A K+ I+DE +T +A NAL + +E+
Sbjct: 88 IIEMDAASHRKIDDIR-ELIEQTKYKPAM-ARYKIFIIDEVHMLTKEAFNALLKTLEEPP 145
Query: 675 ENVRFCIICNYLGKIIPALQSRCTRFRFAPLKQDQIVPRLQEIVTTEGVKMSEGGMKALL 496
V+F + K+ + SR FRF + ++ I+ L+ I++ EG+ ++ L
Sbjct: 146 SYVKFILATTDPLKLPATVLSRTQHFRFKQIGKNSIIKHLEFILSKEGISYEREALEILA 205
Query: 495 TLSGGDMRKVLNTL-QSTWLAYRDVTEDNVYTCVGHPLRADIDSILNWLL 349
G +R L L Q+ ++T+ +V + +G + I+ IL+ ++
Sbjct: 206 RSGRGSLRDTLTLLDQAIIYGANNITQSSVASMLGLLDPSRIEQILSLVM 255
>UniRef50_A3YHQ6 Cluster: DNA polymerase III subunits gamma and tau;
n=1; Marinomonas sp. MED121|Rep: DNA polymerase III
subunits gamma and tau - Marinomonas sp. MED121
Length = 823
Score = 58.4 bits (135), Expect = 2e-07
Identities = 42/190 (22%), Positives = 97/190 (51%), Gaps = 1/190 (0%)
Frame = -2
Query: 756 KLIILDEADAMTNDAQNALRRIIEKYTENVRFCIICNYLGKIIPALQSRCTRFRFAPLKQ 577
K+ ++DE ++ + NAL + +E+ +V+F + K+ + SRC +F +
Sbjct: 122 KVYLIDEVHMLSTHSFNALLKTLEEPPAHVKFLLATTDPQKLPVTILSRCLQFNLKNMSP 181
Query: 576 DQIVPRLQEIVTTEGVKMSEGGMKALLTLSGGDMRKVLN-TLQSTWLAYRDVTEDNVYTC 400
++V L++++TTE + E G+ + + G MR L+ T Q+ ++E +V +
Sbjct: 182 GRVVNYLEKVLTTEQLSYDEAGLWQIGQAANGSMRDALSLTDQAIAFGNGHISETDVTSM 241
Query: 399 VGHPLRADIDSILNWLLNENDFSACFKSIQDLKIAKGLALSDILAEVHTIIQRVKLPPEV 220
+G +A + +L+ ++ ++D + K + DL + ++ I A + ++ R+ + +V
Sbjct: 242 LGLVNQAQVVGLLDAIV-QSDAANLLKLVNDLADYQPDFVA-ICASLLDLLHRIAIEQQV 299
Query: 219 LVSLLIKMSD 190
+L ++ D
Sbjct: 300 PGALEDQLGD 309
>UniRef50_Q7QR65 Cluster: GLP_301_13398_14519; n=1; Giardia lamblia
ATCC 50803|Rep: GLP_301_13398_14519 - Giardia lamblia
ATCC 50803
Length = 373
Score = 58.4 bits (135), Expect = 2e-07
Identities = 40/143 (27%), Positives = 75/143 (52%), Gaps = 8/143 (5%)
Frame = -2
Query: 852 LELNAXD--DRGIGIVRGQILSFASTRTIFKAGPKLIILDEADAMTNDAQNALRRIIEKY 679
LELN + + + I++ + AST +I K+++L +AD ++ AQ ALRR++E+Y
Sbjct: 90 LELNPSEMGNHDVFIIQTVLKETASTSSIGDKF-KVVVLQDADKLSFTAQQALRRLMEQY 148
Query: 678 TENVRFCIICNYLGKIIPALQSRCTRFRFAPLKQDQIVPRLQEIVTTEGVK--MSEGGMK 505
+ ++ + +IP + SRC R ++IV L+ +T + ++ +
Sbjct: 149 AATCKLILMAESISGLIPPIVSRCFCIRVPGFSDEEIVHALETTITKHRLMQGFTKESLH 208
Query: 504 ALL----TLSGGDMRKVLNTLQS 448
ALL T++ GD+R+ LQ+
Sbjct: 209 ALLPEVATVARGDLRRAFLLLQT 231
>UniRef50_Q5CPV9 Cluster: DNA replication repC1, AAA+ ATpase with a
BRCT domain at the N- terminus; n=2;
Cryptosporidium|Rep: DNA replication repC1, AAA+ ATpase
with a BRCT domain at the N- terminus - Cryptosporidium
parvum Iowa II
Length = 874
Score = 58.4 bits (135), Expect = 2e-07
Identities = 40/125 (32%), Positives = 66/125 (52%), Gaps = 4/125 (3%)
Frame = -2
Query: 753 LIILDEADAMTNDAQN---ALRRIIEKYTENVRFCIICNYLGKIIPALQSRCTRFRFAPL 583
L+I+DE D + + AL R+I+K T CI + + + + L +C RF+
Sbjct: 413 LLIMDEMDGLGGSDRGGAAALGRLIQK-TRWPIICICNDRMSEKVRNLAPKCYDLRFSRP 471
Query: 582 KQDQIVPRLQEIVTTEGVKMSEGGMKALLTLSGGDMRKVLNTLQSTWLAYRDVTEDNVYT 403
+ QI+ R+QEI EG+K+ ++ L G D+R++LN LQ L+ +V +V T
Sbjct: 472 SKVQIIKRMQEIANKEGMKIEPNAIELLCESVGNDLRQILNELQLLSLSNINVRFSDVKT 531
Query: 402 CV-GH 391
+ GH
Sbjct: 532 EISGH 536
>UniRef50_Q6NC57 Cluster: Possible DNA polymerase III tau subunit;
n=8; Alphaproteobacteria|Rep: Possible DNA polymerase
III tau subunit - Rhodopseudomonas palustris
Length = 623
Score = 58.0 bits (134), Expect = 3e-07
Identities = 55/216 (25%), Positives = 95/216 (43%), Gaps = 4/216 (1%)
Frame = -2
Query: 855 VLELNAXDDRGIGIVRGQILSFASTRTIFKAGPKLIILDEADAMTNDAQNALRRIIEKYT 676
VLE++A G+ VR ++ + A K+ I+DE ++ A NA + +E+
Sbjct: 120 VLEMDAASHTGVDDVRQ--INDSVRYAPASARYKVYIIDEVHMLSTAAFNAFLKTLEEPP 177
Query: 675 ENVRFCIICNYLGKIIPALQSRCTRFRFAPLKQDQIVPRLQEIVTTEGVKMSEGGMKALL 496
E+ +F + K+ + SRC RF ++ D ++ L I EGV++ + +
Sbjct: 178 EHAKFVFATTEIRKVPVTVLSRCQRFDLRRVEADVLMNHLSNIAQKEGVEVEPEALGIVA 237
Query: 495 TLSGGDMRKVLNTL-QSTWLAYRDVTEDNVYTCVGHPLRADIDSILNWLLNENDFSACFK 319
+ G +R L+ Q+ A V D V +G R + + + L D +A F
Sbjct: 238 RAAEGSVRDSLSLFDQAIAHAAGVVRADAVRQMLGLADRTRVIELFD-ALARGDIAAAFA 296
Query: 318 SIQDLKIAKG---LALSDILAEVHTIIQRVKLPPEV 220
+D + LSD LAE + RVK+ P +
Sbjct: 297 EFRDQYDTGADPVVVLSD-LAEFVNFVTRVKIVPAI 331
>UniRef50_Q6MDZ7 Cluster: Probable DNA-directed DNA polymerase III
subunits gamma/tau dnaX; n=1; Candidatus Protochlamydia
amoebophila UWE25|Rep: Probable DNA-directed DNA
polymerase III subunits gamma/tau dnaX - Protochlamydia
amoebophila (strain UWE25)
Length = 522
Score = 58.0 bits (134), Expect = 3e-07
Identities = 36/130 (27%), Positives = 66/130 (50%), Gaps = 2/130 (1%)
Frame = -2
Query: 855 VLELNAXDDRGIGIVR--GQILSFASTRTIFKAGPKLIILDEADAMTNDAQNALRRIIEK 682
VLE++ RGI +R + + +A+T +K + I+DE +T +A NAL + +E+
Sbjct: 92 VLEIDGASHRGIEDIRQINETVGYAATSGQYK----VYIIDEVHMLTKEAFNALLKTLEE 147
Query: 681 YTENVRFCIICNYLGKIIPALQSRCTRFRFAPLKQDQIVPRLQEIVTTEGVKMSEGGMKA 502
V+F K++P + SRC RF + + QI+ +L+ I + + E ++
Sbjct: 148 PPPKVKFIFATTEAHKVLPTILSRCQRFNLSRIPLSQIMIKLKLIADQLEIDVEEEALQL 207
Query: 501 LLTLSGGDMR 472
L + G +R
Sbjct: 208 LAYKAEGGLR 217
>UniRef50_Q5P9F0 Cluster: DNA polymerase III gamma subunit; n=2;
Anaplasma|Rep: DNA polymerase III gamma subunit -
Anaplasma marginale (strain St. Maries)
Length = 474
Score = 58.0 bits (134), Expect = 3e-07
Identities = 37/137 (27%), Positives = 67/137 (48%)
Frame = -2
Query: 855 VLELNAXDDRGIGIVRGQILSFASTRTIFKAGPKLIILDEADAMTNDAQNALRRIIEKYT 676
V+E++A + G+ +R +L S+ + K+ I+DE ++ A NAL + +E
Sbjct: 87 VIEMDAASNTGVDDIR--VLLENSSYLPTSSRYKVYIIDEVHMLSISAFNALLKTLEDPA 144
Query: 675 ENVRFCIICNYLGKIIPALQSRCTRFRFAPLKQDQIVPRLQEIVTTEGVKMSEGGMKALL 496
E+VRF + + K+ + SRC R L DQ+ L EI E ++ G++ +
Sbjct: 145 EHVRFVMATTEVRKVPVTVASRCHRLDLFKLTTDQLFAHLVEIAKKEDIEHDGDGLRLIA 204
Query: 495 TLSGGDMRKVLNTLQST 445
+ G +R L L+ +
Sbjct: 205 ENASGSVRNALFLLEQS 221
>UniRef50_Q0ASK9 Cluster: DNA polymerase III, subunits gamma and
tau; n=1; Maricaulis maris MCS10|Rep: DNA polymerase
III, subunits gamma and tau - Maricaulis maris (strain
MCS10)
Length = 606
Score = 58.0 bits (134), Expect = 3e-07
Identities = 35/134 (26%), Positives = 64/134 (47%)
Frame = -2
Query: 855 VLELNAXDDRGIGIVRGQILSFASTRTIFKAGPKLIILDEADAMTNDAQNALRRIIEKYT 676
V+E++A G+G +R +IL + A K+ I+DE ++ A NAL + +E+
Sbjct: 123 VMEMDAASRTGVGDIR-EILEGVRYAPV-SARYKVYIIDEVHMLSTSAFNALLKTLEEPP 180
Query: 675 ENVRFCIICNYLGKIIPALQSRCTRFRFAPLKQDQIVPRLQEIVTTEGVKMSEGGMKALL 496
E+ +F + K+ + SRC RF + ++ + L I EG + G+ +
Sbjct: 181 EHAKFIFATTEIRKVPVTVLSRCQRFDLKRIDREVLTDHLDRICGLEGASVERDGLSLIA 240
Query: 495 TLSGGDMRKVLNTL 454
+ G +R L+ L
Sbjct: 241 RAAEGSVRDALSLL 254
>UniRef50_Q89LM6 Cluster: Bll4517 protein; n=11;
Bradyrhizobiaceae|Rep: Bll4517 protein - Bradyrhizobium
japonicum
Length = 348
Score = 57.6 bits (133), Expect = 4e-07
Identities = 34/121 (28%), Positives = 61/121 (50%), Gaps = 8/121 (6%)
Frame = -2
Query: 804 QILSFASTRTIFKAGPKLIILDEADAMTNDAQNALRRIIEKYTENVRFCIICNYLGKIIP 625
+ +SF + T G ++ I+D D + +A NAL +I+E+ + F ++ + +++
Sbjct: 126 ETISFFGS-TAAAEGWRVCIVDTVDELNPNAANALLKILEEPPQQSLFLLVSHAPARVLA 184
Query: 624 ALQSRCTRFRFAPLKQDQIVPRLQE--------IVTTEGVKMSEGGMKALLTLSGGDMRK 469
+QSRC + R PL D+++ E + E + SEG + LTL GGD K
Sbjct: 185 TIQSRCRKLRLRPLGTDEVISAAAEAAGLAPTDLALREAAEASEGSVARALTLLGGDALK 244
Query: 468 V 466
+
Sbjct: 245 L 245
>UniRef50_Q7NXL6 Cluster: DNA polymerase subunits gamma and tau;
n=1; Chromobacterium violaceum|Rep: DNA polymerase
subunits gamma and tau - Chromobacterium violaceum
Length = 639
Score = 57.6 bits (133), Expect = 4e-07
Identities = 50/217 (23%), Positives = 98/217 (45%), Gaps = 1/217 (0%)
Frame = -2
Query: 855 VLELNAXDDRGIGIVRGQILSFASTRTIFKAGPKLIILDEADAMTNDAQNALRRIIEKYT 676
+LE++A + GI +R + + T+ + K+ I+DE ++ A NA+ + +E+
Sbjct: 90 LLEIDAASNTGIDNIREVLENAQYAPTMGRF--KVYIIDEVHMLSKSAFNAMLKTLEEPP 147
Query: 675 ENVRFCIICNYLGKIIPALQSRCTRFRFAPLKQDQIVPRLQEIVTTEGVKMSEGGMKALL 496
+V+F + K+ + SRC +F + Q+ L ++ EG+ + L
Sbjct: 148 GHVKFILATTDPQKVPVTVLSRCLQFSLRNMTPQQVSSHLAHMLDIEGIHYEAPALALLG 207
Query: 495 TLSGGDMRKVLNTL-QSTWLAYRDVTEDNVYTCVGHPLRADIDSILNWLLNENDFSACFK 319
+ G MR + L Q+ +V ED V +G R + ++L L +D A
Sbjct: 208 RAASGSMRDAQSLLDQAIAYGLGEVKEDGVRAMLGAVDRRYLFTLLQ-ALAASDGPALMA 266
Query: 318 SIQDLKIAKGLALSDILAEVHTIIQRVKLPPEVLVSL 208
D +G++ L+E+ ++Q++ L V +L
Sbjct: 267 E-ADRLAERGVSFDSALSELAVLLQQLALAQTVPAAL 302
>UniRef50_Q4FNB0 Cluster: DNA-directed DNA polymerase gamma/tau
subunit; n=2; Candidatus Pelagibacter ubique|Rep:
DNA-directed DNA polymerase gamma/tau subunit -
Pelagibacter ubique
Length = 557
Score = 57.6 bits (133), Expect = 4e-07
Identities = 38/139 (27%), Positives = 69/139 (49%)
Frame = -2
Query: 855 VLELNAXDDRGIGIVRGQILSFASTRTIFKAGPKLIILDEADAMTNDAQNALRRIIEKYT 676
VLE++A G+ VR ++ F+ A K+ I+DE ++ A NAL + +E+
Sbjct: 93 VLEMDAASKTGVDDVR-DLIEFSRYGPT-TAKYKIFIIDEVHMLSKQAFNALLKTLEEPP 150
Query: 675 ENVRFCIICNYLGKIIPALQSRCTRFRFAPLKQDQIVPRLQEIVTTEGVKMSEGGMKALL 496
E ++F + KI + SRC RF + +K ++ +++I E S+ +K ++
Sbjct: 151 EYLKFIFATTEIKKIPITVVSRCQRFDLSRIKSLELFDFIRKIKEKENGNASDDALKLIV 210
Query: 495 TLSGGDMRKVLNTLQSTWL 439
+S G +R L+ L L
Sbjct: 211 KISEGSVRDALSLLDRALL 229
>UniRef50_Q18U88 Cluster: DNA polymerase III, subunits gamma and
tau; n=2; Desulfitobacterium hafniense|Rep: DNA
polymerase III, subunits gamma and tau -
Desulfitobacterium hafniense (strain DCB-2)
Length = 554
Score = 57.6 bits (133), Expect = 4e-07
Identities = 45/160 (28%), Positives = 76/160 (47%), Gaps = 1/160 (0%)
Frame = -2
Query: 870 QFSSM-VLELNAXDDRGIGIVRGQILSFASTRTIFKAGPKLIILDEADAMTNDAQNALRR 694
Q S+M V E++A +RGI +R L + ++ K+ I+DE +T +A NAL +
Sbjct: 84 QGSAMEVFEIDAASNRGIDEIRD--LRDKVRLSAGESKYKVYIIDEVHMLTTEAFNALLK 141
Query: 693 IIEKYTENVRFCIICNYLGKIIPALQSRCTRFRFAPLKQDQIVPRLQEIVTTEGVKMSEG 514
+E+ E V F + + KI + SR RF F + +QI L ++ T G +
Sbjct: 142 TLEEPPERVVFILATTEVHKIPLTILSRVQRFEFHRIPLEQIHSHLDKVCQTIGRDVEPE 201
Query: 513 GMKALLTLSGGDMRKVLNTLQSTWLAYRDVTEDNVYTCVG 394
++ + S G +R L+ L L + + VY +G
Sbjct: 202 ALQIIAQKSEGGLRDALSILDQCLLLDGKLGVEQVYQVLG 241
>UniRef50_Q117S8 Cluster: DNA polymerase III, subunits gamma and
tau; n=1; Trichodesmium erythraeum IMS101|Rep: DNA
polymerase III, subunits gamma and tau - Trichodesmium
erythraeum (strain IMS101)
Length = 695
Score = 57.6 bits (133), Expect = 4e-07
Identities = 41/187 (21%), Positives = 86/187 (45%), Gaps = 4/187 (2%)
Frame = -2
Query: 855 VLELNAXDDRGIGIVRGQI--LSFASTRTIFKAGPKLIILDEADAMTNDAQNALRRIIEK 682
V+E++A + G+ +R I FA + +K + ++DE ++ A NAL + +E+
Sbjct: 92 VIEIDAASNTGVDNIRELIERSQFAPVQCRYK----VYVIDEVHMLSVSAFNALLKTLEE 147
Query: 681 YTENVRFCIICNYLGKIIPALQSRCTRFRFAPLKQDQIVPRLQEIVTTEGVKMSEGGMKA 502
+ V F + +++ + SRC RF F + + +V L I E + ++ ++
Sbjct: 148 PPKGVVFILATTDPQRVLATIISRCQRFDFRRIPLEAMVKHLHHIAIEEKIDITTEAIQM 207
Query: 501 LLTLSGGDMRKVLNTLQSTWLAYRDVTEDNVYTCVGHPLRADIDSILNWLLNENDFSA-- 328
+ ++ G +R + L L ++T + V+ VG D+ ++ + +N
Sbjct: 208 IAQIAQGGLRDAESLLDQLSLLAGEITVERVWDLVGAVPERDLMVLVEAIAADNSIKVLK 267
Query: 327 CFKSIQD 307
C + I D
Sbjct: 268 CTRQIMD 274
>UniRef50_Q057E1 Cluster: DNA polymerase III, g and t subunits; n=1;
Buchnera aphidicola str. Cc (Cinara cedri)|Rep: DNA
polymerase III, g and t subunits - Buchnera aphidicola
subsp. Cinara cedri
Length = 368
Score = 57.6 bits (133), Expect = 4e-07
Identities = 39/178 (21%), Positives = 88/178 (49%), Gaps = 3/178 (1%)
Frame = -2
Query: 756 KLIILDEADAMTNDAQNALRRIIEKYTENVRFCIICNYLGKIIPALQSRCTRFRFAPLKQ 577
K+ ++DE ++ + NAL +I+E+ + ++ I + KI + SRC + + +
Sbjct: 121 KIYLIDEVHMLSKHSFNALLKILEEPPKYIQIYIATTNIHKIPKTIISRCLHIKLSYITL 180
Query: 576 DQIVPRLQEIVTTEGVKMSEGGMKALLTLSGGDMRKVLNTLQSTWLAYRDVTE---DNVY 406
I L++I E +K+ + +K + S G +R LNTL+ + ++ TE ++
Sbjct: 181 HNIYNFLKKITKKENIKIKKEALKIISNTSQGSIRNALNTLEFIRSSVKNKTEIKKKYIF 240
Query: 405 TCVGHPLRADIDSILNWLLNENDFSACFKSIQDLKIAKGLALSDILAEVHTIIQRVKL 232
+G + ++ + ++N NDF+ F + + + G+ S+I++ + ++ L
Sbjct: 241 KLLGILDKKNVLKLAIEIIN-NDFNKIFNILNNAE-KIGIQYSNIVSSLIIFFHKISL 296
>UniRef50_A6VYC4 Cluster: DNA polymerase III, subunits gamma and
tau; n=1; Marinomonas sp. MWYL1|Rep: DNA polymerase III,
subunits gamma and tau - Marinomonas sp. MWYL1
Length = 752
Score = 57.6 bits (133), Expect = 4e-07
Identities = 51/222 (22%), Positives = 105/222 (47%), Gaps = 4/222 (1%)
Frame = -2
Query: 798 LSFASTRTIFKAGPKLIILDEADAMTNDAQNALRRIIEKYTENVRFCIICNYLGKIIPAL 619
+ +A TR FK + ++DE ++ + NAL + +E+ +V+F + K+ +
Sbjct: 112 VQYAPTRGRFK----VYLIDEVHMLSTHSFNALLKTLEEPPAHVKFLLATTDPQKLPVTI 167
Query: 618 QSRCTRFRFAPLKQDQIVPRLQEIVTTEGVKMSEGGMKALLTLSGGDMRKVLN-TLQSTW 442
SRC +F + ++V LQ ++TTE V + + + + G MR L+ T Q+
Sbjct: 168 LSRCLQFNLKNMSPQRVVDYLQTVLTTEEVNFDQPALWQIGQAANGSMRDALSLTDQAIA 227
Query: 441 LAYRDVTEDNVYTCVGHPLRADIDSILNWLLNENDFSACFKSIQDLKIAKGLALSDILAE 262
++E V +G +A + +L + ++N + I+ L + + I
Sbjct: 228 FGNGTISESGVTAMLGLVNQAQVLDLLESVASKN-AAQVLTRIEQLADYQP-DFTAICGS 285
Query: 261 VHTIIQRVKLPPEVLVSLLIKMSD---AEARLASGSSERVEL 145
+ ++ RV + +V +L+ ++ D +A AS SSE +++
Sbjct: 286 LLDVLHRVAIEQQVPGALMDQLGDLARIQAIAASVSSEEIQI 327
>UniRef50_A6GQQ4 Cluster: AAA ATPase, central region; n=1;
Limnobacter sp. MED105|Rep: AAA ATPase, central region -
Limnobacter sp. MED105
Length = 586
Score = 57.6 bits (133), Expect = 4e-07
Identities = 45/176 (25%), Positives = 80/176 (45%), Gaps = 1/176 (0%)
Frame = -2
Query: 756 KLIILDEADAMTNDAQNALRRIIEKYTENVRFCIICNYLGKIIPALQSRCTRFRFAPLKQ 577
K+ ++DE ++ A NA+ + +E+ +V F + KI + SRC +F L
Sbjct: 124 KVYVIDEVHMLSTSAFNAMLKTLEEPPGHVLFILATTDPQKIPATVLSRCLQFALRQLPP 183
Query: 576 DQIVPRLQEIVTTEGVKMSEGGMKALLTLSGGDMRKVLN-TLQSTWLAYRDVTEDNVYTC 400
DQ+ L I++ E + G ++ L + G +R L+ T Q+ + VTED V T
Sbjct: 184 DQLADHLAHILSEEQIAFEPGALRLLAKAARGSVRDALSLTDQAIAYSAGHVTEDTVRTM 243
Query: 399 VGHPLRADIDSILNWLLNENDFSACFKSIQDLKIAKGLALSDILAEVHTIIQRVKL 232
+G + + +L L + D A + + + A IL E+ I R+ +
Sbjct: 244 LGAIDQQVVHQLLQ-ALAQGDGKALLE-LSNALAAASAPFGAILDELAAIAYRLSV 297
>UniRef50_A5KSU9 Cluster: DNA polymerase III, subunits gamma and
tau; n=1; candidate division TM7 genomosp. GTL1|Rep: DNA
polymerase III, subunits gamma and tau - candidate
division TM7 genomosp. GTL1
Length = 454
Score = 57.6 bits (133), Expect = 4e-07
Identities = 53/248 (21%), Positives = 114/248 (45%), Gaps = 4/248 (1%)
Frame = -2
Query: 855 VLELNAXDDRGIGIVRG--QILSFASTRTIFKAGPKLIILDEADAMTNDAQNALRRIIEK 682
++E++A +R I +R + + A T FK + I+DE +T ++ NAL + +E+
Sbjct: 75 IVEIDAASNRRIDDIRDLREKVHIAPTSAPFK----VYIIDEVHMLTGESFNALLKTLEE 130
Query: 681 YTENVRFCIICNYLGKIIPALQSRCTRFRFAPLKQDQIVPRLQEIVTTEGVKMSEGGMKA 502
+V F + K+ + SR RF F + + ++ L I E +K+ E ++
Sbjct: 131 PPAHVVFILATTEAHKLPATIVSRTQRFHFRLIPEAEVAKHLSHIAEQENIKIDEDALEL 190
Query: 501 LLTLSGGDMRKVLNTLQSTWLAYRD--VTEDNVYTCVGHPLRADIDSILNWLLNENDFSA 328
+ G R ++ L D VT + + +G RA ++ ++ L +D
Sbjct: 191 IAEHGEGSFRDSISLLDQLGSVAGDEHVTAKMIESTLGLAPRARVEKLIE-LTEAHDIGG 249
Query: 327 CFKSIQDLKIAKGLALSDILAEVHTIIQRVKLPPEVLVSLLIKMSDAEARLASGSSERVE 148
K + +L+ G + + ++ ++ + R++ PP + +++A + + +++
Sbjct: 250 ATKLLDNLE-KVGTSPTVLVNQLLKAL-RIQEPP---TTESFALAEALLEVPRSHNPQMK 304
Query: 147 LAALIASF 124
L A+IA F
Sbjct: 305 LLAIIAKF 312
>UniRef50_Q8G0U2 Cluster: DNA polymerase III, delta prime subunit
domain protein; n=6; Brucellaceae|Rep: DNA polymerase
III, delta prime subunit domain protein - Brucella suis
Length = 360
Score = 57.2 bits (132), Expect = 5e-07
Identities = 35/122 (28%), Positives = 58/122 (47%)
Frame = -2
Query: 783 TRTIFKAGPKLIILDEADAMTNDAQNALRRIIEKYTENVRFCIICNYLGKIIPALQSRCT 604
TRT +++I+D AD M +A NAL + +E+ F +I + G+++P ++SRC
Sbjct: 135 TRTASDHAWRIVIVDPADDMNRNAANALLKTLEEPPARALFILISHSSGRLLPTIRSRCQ 194
Query: 603 RFRFAPLKQDQIVPRLQEIVTTEGVKMSEGGMKALLTLSGGDMRKVLNTLQSTWLAYRDV 424
F PL + + L + G+ + + LL S G +RK L L L D
Sbjct: 195 SISFKPLDGETLGRALSHAGSKAGISAGD-ITEVLLQRSEGSVRKALLLLAHGGLEISDT 253
Query: 423 TE 418
+
Sbjct: 254 VD 255
>UniRef50_A7HD56 Cluster: DNA polymerase III, delta prime subunit;
n=2; Anaeromyxobacter|Rep: DNA polymerase III, delta
prime subunit - Anaeromyxobacter sp. Fw109-5
Length = 347
Score = 57.2 bits (132), Expect = 5e-07
Identities = 37/115 (32%), Positives = 56/115 (48%)
Frame = -2
Query: 771 FKAGPKLIILDEADAMTNDAQNALRRIIEKYTENVRFCIICNYLGKIIPALQSRCTRFRF 592
F+ + +ILD ADAM AQNAL + +E+ E ++ ++P ++SRC R F
Sbjct: 128 FEGRRRFVILDPADAMNPQAQNALLKTLEEPPEATTLVLVAASPDALLPTIRSRCLRVPF 187
Query: 591 APLKQDQIVPRLQEIVTTEGVKMSEGGMKALLTLSGGDMRKVLNTLQSTWLAYRD 427
APL + RL+ G +E + A L+GG + + L T A RD
Sbjct: 188 APLPAAAVAARLE----AGGRPAAEARLAA--ALAGGSLSRALALDAETLAAERD 236
>UniRef50_Q41AZ0 Cluster: DNA-directed DNA polymerase; n=1;
Exiguobacterium sibiricum 255-15|Rep: DNA-directed DNA
polymerase - Exiguobacterium sibiricum 255-15
Length = 561
Score = 56.8 bits (131), Expect = 7e-07
Identities = 41/155 (26%), Positives = 76/155 (49%), Gaps = 1/155 (0%)
Frame = -2
Query: 855 VLELNAXDDRGIGIVRGQILSFASTRTIFKAGPKLIILDEADAMTNDAQNALRRIIEKYT 676
V E++A + G+ +R +I +A K+ I+DE ++ A NAL + +E+
Sbjct: 90 VFEIDAASNNGVDEIR-EIRDKVKYPPS-EAAYKVYIIDEVHMLSTGAFNALLKTLEEPP 147
Query: 675 ENVRFCIICNYLGKIIPALQSRCTRFRFAPLKQDQIVPRLQEIVTTEGVKMSEGGMKALL 496
+ F + KI + SRC RF + DQ++ R+Q I++ + + +E ++ +
Sbjct: 148 AHAIFILATTEPHKIPATIISRCQRFDVKRHEVDQLMERMQYILSDQTIGYTETALRLIA 207
Query: 495 TLSGGDMRKVLNTL-QSTWLAYRDVTEDNVYTCVG 394
+ G MR L+ L Q+ + D+T+D V G
Sbjct: 208 RAADGGMRDALSLLDQAVAFSNGDLTDDAVLEVTG 242
>UniRef50_Q1Z5S3 Cluster: DNA polymerase III subunits gamma and tau;
n=12; Vibrionales|Rep: DNA polymerase III subunits gamma
and tau - Photobacterium profundum 3TCK
Length = 759
Score = 56.8 bits (131), Expect = 7e-07
Identities = 47/200 (23%), Positives = 89/200 (44%), Gaps = 1/200 (0%)
Frame = -2
Query: 756 KLIILDEADAMTNDAQNALRRIIEKYTENVRFCIICNYLGKIIPALQSRCTRFRFAPLKQ 577
K+ ++DE ++ + NAL + +E+ E V+F + K+ + SRC +F L
Sbjct: 121 KVYLIDEVHMLSRHSFNALLKTLEEPPEYVKFILATTDPQKLPVTILSRCLQFHLKHLDN 180
Query: 576 DQIVPRLQEIVTTEGVKMSEGGMKALLTLSGGDMRKVLN-TLQSTWLAYRDVTEDNVYTC 400
+QI +L ++T E V + L + G MR L+ T Q+ L V D+V
Sbjct: 181 NQIQSQLSNVLTQENVDFEPKALSLLSRAAEGSMRDALSLTDQAIALGNGQVHADSVSMM 240
Query: 399 VGHPLRADIDSILNWLLNENDFSACFKSIQDLKIAKGLALSDILAEVHTIIQRVKLPPEV 220
+G L D L ++ + +++L + G+ +L E+ + RV + +
Sbjct: 241 LG-TLNTDQALFLLEAVSGGQANTAMGGLEEL-ASVGVEWDSLLRELSAQLHRVAMHQAL 298
Query: 219 LVSLLIKMSDAEARLASGSS 160
+L + DA+ + S+
Sbjct: 299 PAALDMSAPDADRIITLSSA 318
>UniRef50_A4BJR3 Cluster: DNA polymerase III subunits gamma and tau;
n=1; Reinekea sp. MED297|Rep: DNA polymerase III
subunits gamma and tau - Reinekea sp. MED297
Length = 677
Score = 56.8 bits (131), Expect = 7e-07
Identities = 55/229 (24%), Positives = 103/229 (44%), Gaps = 6/229 (2%)
Frame = -2
Query: 798 LSFASTRTIFKAGPKLIILDEADAMTNDAQNALRRIIEKYTENVRFCIICNYLGKIIPAL 619
+ +A TR FK + ++DE ++ + NAL + +E+ +V+F + K+ +
Sbjct: 111 VQYAPTRGRFK----VYLIDEVHMLSTSSFNALLKTLEEPPPHVKFLLATTDPQKLPVTV 166
Query: 618 QSRCTRFRFAPLKQDQIVPRLQEIVTTEGVKMSEGGMKALLTLSGGDMRKVLN-TLQSTW 442
SRC +F + ++ IV L I+T E V E + A+ + G MR L+ T Q+
Sbjct: 167 LSRCLQFNLKNMSREHIVQHLNHILTVEQVPFDEPSLWAIAEGAQGSMRDALSLTDQAIA 226
Query: 441 LAYRDVTEDNVYTCVGHPLRADIDSILNWL--LNENDFSACFKSIQDLKIAKGLALSDIL 268
+ + E V +G D+ +LN + L + D + +L +L
Sbjct: 227 FGHGALAEQEVAAMLG---TVDLKRVLNLVRALLQKDADGLLAMVSELD-EHTPDYQTLL 282
Query: 267 AEVHTIIQRVKLPPEVLVSLLIKMSDAEARLA---SGSSERVELAALIA 130
E+ + + RV + V ++ D +A +A +G +E ++L IA
Sbjct: 283 TELMSTLHRVAIAQAVPSAISNHKGDRDAIMALAKAGYAEDIQLYYQIA 331
>UniRef50_Q5UQE8 Cluster: Putative replication factor C small
subunit L478; n=1; Acanthamoeba polyphaga mimivirus|Rep:
Putative replication factor C small subunit L478 -
Mimivirus
Length = 370
Score = 56.8 bits (131), Expect = 7e-07
Identities = 28/98 (28%), Positives = 52/98 (53%)
Frame = -2
Query: 756 KLIILDEADAMTNDAQNALRRIIEKYTENVRFCIICNYLGKIIPALQSRCTRFRFAPLKQ 577
K I++ + + N++Q ALRR +E+Y + RF ++CN L KI+ L+SRC F
Sbjct: 128 KTIVIHNIENLANNSQAALRRTMERYAKTCRFIMVCNNLSKIMDPLRSRCRTFCVPLPTI 187
Query: 576 DQIVPRLQEIVTTEGVKMSEGGMKALLTLSGGDMRKVL 463
+ I + I E +K+++ K +L +++ +
Sbjct: 188 ENINTVVDYIAFMENIKLNKNDTKFILDNCNNNLKTAI 225
>UniRef50_Q83FL2 Cluster: DNA polymerase III gamma and tau subunit;
n=2; Tropheryma whipplei|Rep: DNA polymerase III gamma
and tau subunit - Tropheryma whipplei (strain Twist)
(Whipple's bacillus)
Length = 522
Score = 56.4 bits (130), Expect = 9e-07
Identities = 35/136 (25%), Positives = 68/136 (50%), Gaps = 2/136 (1%)
Frame = -2
Query: 855 VLELNAXDDRGIGIVRG--QILSFASTRTIFKAGPKLIILDEADAMTNDAQNALRRIIEK 682
V+E++A G+ R + FA ++ F+ + ILDEA +T NAL +I+E+
Sbjct: 94 VIEIDAASHNGVDDARALRERAIFAPAQSRFR----IFILDEAHMVTTQGFNALLKIVEE 149
Query: 681 YTENVRFCIICNYLGKIIPALQSRCTRFRFAPLKQDQIVPRLQEIVTTEGVKMSEGGMKA 502
+V+F K++ ++SR + FA + + P + +I E +++ +G +
Sbjct: 150 PPAHVKFIFATTEPEKVLGTIRSRTFSYPFALVSASVMQPYIADICNKEKIRVEDGVLPL 209
Query: 501 LLTLSGGDMRKVLNTL 454
++ GG +R L+ L
Sbjct: 210 VVRAGGGSVRDTLSIL 225
>UniRef50_Q6FZU9 Cluster: DNA polymerase III, delta prime subunit;
n=3; Bartonella|Rep: DNA polymerase III, delta prime
subunit - Bartonella quintana (Rochalimaea quintana)
Length = 351
Score = 56.4 bits (130), Expect = 9e-07
Identities = 28/98 (28%), Positives = 53/98 (54%)
Frame = -2
Query: 762 GPKLIILDEADAMTNDAQNALRRIIEKYTENVRFCIICNYLGKIIPALQSRCTRFRFAPL 583
G +++I+D AD M A NA+ + +E+ F II + GK++P ++SRC + PL
Sbjct: 136 GWRIVIIDPADDMNRSAANAILKTLEEPPAKTLFIIITHSSGKLLPTIRSRCQQISLRPL 195
Query: 582 KQDQIVPRLQEIVTTEGVKMSEGGMKALLTLSGGDMRK 469
D++ + + + +++E +K ++ S G RK
Sbjct: 196 HDDEMKKVITHVFFNQN-RLNEETIKMIVQRSKGSPRK 232
>UniRef50_Q6F0D9 Cluster: DNA polymerase III gamma and tau subunits;
n=1; Mesoplasma florum|Rep: DNA polymerase III gamma and
tau subunits - Mesoplasma florum (Acholeplasma florum)
Length = 631
Score = 56.4 bits (130), Expect = 9e-07
Identities = 42/179 (23%), Positives = 83/179 (46%), Gaps = 1/179 (0%)
Frame = -2
Query: 873 QQFSSMVLELNAXDDRGIGIVRGQILSFASTRTIFKAGPKLIILDEADAMTNDAQNALRR 694
+Q + ++E++A + G+ +R + S I K K+ I+DE +T A NAL +
Sbjct: 85 EQRNPDIIEMDAASNNGVDEIREIKNNINSLPFIGKY--KIYIIDEVHMLTKAAFNALLK 142
Query: 693 IIEKYTENVRFCIICNYLGKIIPALQSRCTRFRFAPLKQDQIVPRLQEIVTTEGVKMSEG 514
+E+ + F + KI + SRC F F + + ++ RL I EG K+ +
Sbjct: 143 TLEEPPVHAIFILATTEYAKIPATILSRCQIFNFKKIDRISLMNRLSFICENEGYKIDKA 202
Query: 513 GMKALLTLSGGDMRKVLNTLQSTWLAYRD-VTEDNVYTCVGHPLRADIDSILNWLLNEN 340
++ + +S G +R N ++ D +T +++ + + + IL +LN +
Sbjct: 203 VLEEIAIISEGSLRDASNVIEQLMTVTSDHITVEDLKSVFYVATKNEKMKILTNILNND 261
>UniRef50_Q9GQW6 Cluster: Replication factor C subunit 1; n=6;
Plasmodium|Rep: Replication factor C subunit 1 -
Plasmodium falciparum
Length = 904
Score = 56.4 bits (130), Expect = 9e-07
Identities = 43/146 (29%), Positives = 72/146 (49%), Gaps = 11/146 (7%)
Frame = -2
Query: 855 VLELNAXDDRGIGIVR--------GQILSFASTRTIFKAGPKLIILDEADAMTND---AQ 709
V+E NA D+R V G + + R + K II+DE D M++
Sbjct: 435 VIEFNASDERNKAAVEKISEMATGGYSIMSLNNRKLTKT---CIIMDEVDGMSSGDKGGS 491
Query: 708 NALRRIIEKYTENVRFCIICNYLGKIIPALQSRCTRFRFAPLKQDQIVPRLQEIVTTEGV 529
A+ ++IEK T+ CI + + L ++C +F+ +++ +V RL EI EG+
Sbjct: 492 TAILKLIEK-TKCPIICICNDRQNNKMRTLANKCYDLKFSMPQKNSVVKRLLEICKKEGI 550
Query: 528 KMSEGGMKALLTLSGGDMRKVLNTLQ 451
M ++ L + GD+R++LNTLQ
Sbjct: 551 MMEPNALELLWESTCGDIRQMLNTLQ 576
>UniRef50_Q2LYB8 Cluster: DNA polymerase III subunit gamma/tau; n=1;
Syntrophus aciditrophicus SB|Rep: DNA polymerase III
subunit gamma/tau - Syntrophus aciditrophicus (strain
SB)
Length = 588
Score = 56.0 bits (129), Expect = 1e-06
Identities = 30/95 (31%), Positives = 49/95 (51%)
Frame = -2
Query: 756 KLIILDEADAMTNDAQNALRRIIEKYTENVRFCIICNYLGKIIPALQSRCTRFRFAPLKQ 577
K+ I+DE +T +A NAL + +E+ +V F K+ + SRC F F L
Sbjct: 121 KVYIIDEVHMLTREAFNALLKTLEEPPPHVVFIFATTETHKVPATILSRCQCFEFRRLSL 180
Query: 576 DQIVPRLQEIVTTEGVKMSEGGMKALLTLSGGDMR 472
QI +L++I TE +++S+ G+ + G MR
Sbjct: 181 RQIAEQLRKIAETEKIRISDAGLAWIAEAGDGSMR 215
>UniRef50_O31001 Cluster: DNA polymerase III holoenzyme tau subunit;
n=3; Thermus thermophilus|Rep: DNA polymerase III
holoenzyme tau subunit - Thermus thermophilus
Length = 529
Score = 56.0 bits (129), Expect = 1e-06
Identities = 37/131 (28%), Positives = 62/131 (47%)
Frame = -2
Query: 756 KLIILDEADAMTNDAQNALRRIIEKYTENVRFCIICNYLGKIIPALQSRCTRFRFAPLKQ 577
K+ ILDEA ++ A NAL + +E+ +V F ++ P + SR FRF L +
Sbjct: 117 KVFILDEAHMLSKSAFNALLKTLEEPPPHVLFVFATTEPERMPPTILSRTQHFRFRRLTE 176
Query: 576 DQIVPRLQEIVTTEGVKMSEGGMKALLTLSGGDMRKVLNTLQSTWLAYRDVTEDNVYTCV 397
++I +L+ I+ G + E + L L+ G +R + L+ L +T V +
Sbjct: 177 EEIAFKLRRILEAVGREAEEEALLLLARLADGALRDAESLLERFLLLEGPLTRKEVERAL 236
Query: 396 GHPLRADIDSI 364
G P R + I
Sbjct: 237 GLPPREALAEI 247
>UniRef50_A6GJ36 Cluster: DNA polymerase III, gamma and tau
subunits; n=1; Plesiocystis pacifica SIR-1|Rep: DNA
polymerase III, gamma and tau subunits - Plesiocystis
pacifica SIR-1
Length = 747
Score = 56.0 bits (129), Expect = 1e-06
Identities = 36/142 (25%), Positives = 65/142 (45%), Gaps = 3/142 (2%)
Frame = -2
Query: 756 KLIILDEADAMTNDAQNALRRIIEKYTENVRFCIICNYLGKIIPALQSRCTRFRFAPLKQ 577
K+ I+DE +T A NAL + +E+ +V F K++P + SR +R + ++
Sbjct: 121 KIYIIDEVHMLTQAAFNALLKTLEEPPPHVTFLFATTDPHKVLPTILSRVSRLDYRRVRA 180
Query: 576 DQIVPRLQEIVTTEGVKMSEGGMKALLTLSGGDMRKVLNTLQSTWLAYRD---VTEDNVY 406
+VP LQ I+ EG + G+ + G +R L L D +T + V
Sbjct: 181 ATLVPYLQFILEQEGFAVEPEGLYVIARCGDGSVRDSLTLLDKVIAFAHDPKAITGEEVL 240
Query: 405 TCVGHPLRADIDSILNWLLNEN 340
T +G R + ++ +L+ +
Sbjct: 241 TVLGQASRYAVAELVQAILDRD 262
>UniRef50_A3EPW1 Cluster: Putative DNA polymerase III, gamma/tau
subunits; n=1; Leptospirillum sp. Group II UBA|Rep:
Putative DNA polymerase III, gamma/tau subunits -
Leptospirillum sp. Group II UBA
Length = 540
Score = 56.0 bits (129), Expect = 1e-06
Identities = 61/238 (25%), Positives = 108/238 (45%), Gaps = 5/238 (2%)
Frame = -2
Query: 855 VLELNAXDDRGIGIVRGQILSFASTRTIFKAGPKLIILDEADAMTNDAQNALRRIIEKYT 676
VLE++ G+ +R L F++ ++ I+DE ++ A NAL + +E+
Sbjct: 91 VLEIDGASHTGVEDIRS--LREGIRYLPFRSRSRVYIIDEVHMLSQAAFNALLKTLEEPP 148
Query: 675 ENVRFCIICNYLGKIIPALQSRCTRFRFAPLKQDQIVPRLQEIVTTEGVKMSEGGMKALL 496
+V F KI + SRC FRF L +I +L+ IV E + + +
Sbjct: 149 PHVVFIFATTEDHKIPDTILSRCQHFRFRSLGVPEITAKLENIVRQESLSFPRAILNLIA 208
Query: 495 TLSGGDMRKVLNTL-QSTWL--AYRDVTEDNVYTCV--GHPLRADIDSILNWLLNENDFS 331
SGG +R L+ L Q +L R V E ++ + G P + +DS+L E +
Sbjct: 209 RASGGSLRDALSLLDQIRFLGDTPRSVEETALFLGMAGGLPEKKLLDSLL-----EGNLK 263
Query: 330 ACFKSIQDLKIAKGLALSDILAEVHTIIQRVKLPPEVLVSLLIKMSDAEARLASGSSE 157
++ D +A G+ D A + ++ +V+ ++L+S L++ + R A SE
Sbjct: 264 NALEN-GDRMLAMGI---DPRATLRSLASKVR---DLLMSSLLECPLTDPRFAWDESE 314
>UniRef50_UPI0000DAE674 Cluster: hypothetical protein
Rgryl_01000912; n=1; Rickettsiella grylli|Rep:
hypothetical protein Rgryl_01000912 - Rickettsiella
grylli
Length = 523
Score = 55.6 bits (128), Expect = 2e-06
Identities = 40/177 (22%), Positives = 88/177 (49%), Gaps = 2/177 (1%)
Frame = -2
Query: 756 KLIILDEADAMTNDAQNALRRIIEKYTENVRFCIICNYLGKIIPALQSRCTRFRFAPLKQ 577
K+ ++DE +++ + NAL + +E+ +V F + ++ + SRC +F +
Sbjct: 121 KIYLIDEVHMLSSHSFNALLKTLEEPPPHVIFLLATTDTQRLPATILSRCLQFHLKTITT 180
Query: 576 DQIVPRLQEIVTTEGVKMSEGGMKALLTLSGGDMRKVLNTLQSTWLAY--RDVTEDNVYT 403
QI +L I+ E + + L + G +R L+ L +AY +++T+ ++ T
Sbjct: 181 VQISNQLANILKKEKIPFEPEALAPLAQAAQGSLRDALSLLDQA-IAYTNQNLTKQDINT 239
Query: 402 CVGHPLRADIDSILNWLLNENDFSACFKSIQDLKIAKGLALSDILAEVHTIIQRVKL 232
+GH ++I +L+ L+ E+ +A S+ + G+ S ++ E+ T + ++ L
Sbjct: 240 LLGHVAHSEIIQLLDALILED--TAKLWSLVEQFSELGVDFSCVMDELLTCLHQMAL 294
>UniRef50_UPI00006CAE51 Cluster: ATPase, AAA family protein; n=1;
Tetrahymena thermophila SB210|Rep: ATPase, AAA family
protein - Tetrahymena thermophila SB210
Length = 1242
Score = 55.6 bits (128), Expect = 2e-06
Identities = 44/159 (27%), Positives = 74/159 (46%), Gaps = 8/159 (5%)
Frame = -2
Query: 873 QQFSSMVLELNAXDDRGIGIVRGQILSFASTRTI-FK----AGPKLIILDEADAMTND-- 715
Q+++ ++E NA D R + I + FK + +I++DE D M++
Sbjct: 713 QKYNMNIIEWNASDVRNKNAIETIINPLKDNTVLNFKHEVSSQRSIILMDEVDGMSSGDI 772
Query: 714 -AQNALRRIIEKYTENVRFCIICNYLGKIIPALQSRCTRFRFAPLKQDQIVPRLQEIVTT 538
AL +II K T+N FC+ + + + +L S C RF + QI RL E+
Sbjct: 773 GGNQALMKII-KETKNPIFCVCNDRYSQKLRSLASICFDVRFYKPNKGQIAKRLLEVCRK 831
Query: 537 EGVKMSEGGMKALLTLSGGDMRKVLNTLQSTWLAYRDVT 421
EG+K ++ L D+R+ LN LQ +D++
Sbjct: 832 EGLKSELNHLEFLAESVNNDIRQALNLLQMQSKKSKDIS 870
>UniRef50_UPI000049936A Cluster: Activator 1 140 kDa subunit; n=1;
Entamoeba histolytica HM-1:IMSS|Rep: Activator 1 140 kDa
subunit - Entamoeba histolytica HM-1:IMSS
Length = 718
Score = 55.6 bits (128), Expect = 2e-06
Identities = 39/141 (27%), Positives = 66/141 (46%), Gaps = 6/141 (4%)
Frame = -2
Query: 852 LELNAXDDRGIGIVRGQILSFASTRTIFKAGPK----LIILDEADAMTNDAQNALRRIIE 685
+E NA D R + I I G K LII+DE D M++ + + +++
Sbjct: 311 IEFNASDTRNKSSIELAIKRIFLNGQISIDGSKNKKPLIIMDEVDGMSSGDRGGITELVK 370
Query: 684 --KYTENVRFCIICNYLGKIIPALQSRCTRFRFAPLKQDQIVPRLQEIVTTEGVKMSEGG 511
K TE CI + + K + L + C F+ + ++ RL+ I EGV +S+
Sbjct: 371 YIKETEQPIVCICNDIMDKKMQPLINVCETINFSKISVSELTERLKYICDKEGVHVSDEN 430
Query: 510 MKALLTLSGGDMRKVLNTLQS 448
+ + + + GD+R +N LQS
Sbjct: 431 LNQIASKAHGDVRYGINMLQS 451
>UniRef50_Q6KIL7 Cluster: DNA polymerase III subunit gamma and tau;
n=1; Mycoplasma mobile|Rep: DNA polymerase III subunit
gamma and tau - Mycoplasma mobile
Length = 720
Score = 55.6 bits (128), Expect = 2e-06
Identities = 46/205 (22%), Positives = 98/205 (47%), Gaps = 1/205 (0%)
Frame = -2
Query: 855 VLELNAXDDRGIGIVRGQILSFASTRTIFKAGPKLIILDEADAMTNDAQNALRRIIEKYT 676
++E++A + G+ +R + + +K K+ I+DEA +T A NAL + +E+
Sbjct: 87 IIEIDAASNNGVDEIRELREKVKYSPSQYKY--KVYIIDEAHMLTKSAFNALLKTLEEPP 144
Query: 675 ENVRFCIICNYLGKIIPALQSRCTRFRFAPLKQDQIVPRLQEIVTTEGVKMSEGGMKALL 496
++ F + KI + SR RF F + + +LQE++T E +++++ + +
Sbjct: 145 KHAIFILATTDPQKIPLTVISRVQRFNFKRITLPILEKQLQEVLTKENIRINKNALTLIA 204
Query: 495 TLSGGDMRKVLNTL-QSTWLAYRDVTEDNVYTCVGHPLRADIDSILNWLLNENDFSACFK 319
++ G +R L+ Q + + ++TE V D LN L+ + D + +
Sbjct: 205 KMAEGGLRDALSIADQISIFSNNNITEKEVDEVFSLVSIEDQIYFLN-LIYKKDTTTVLR 263
Query: 318 SIQDLKIAKGLALSDILAEVHTIIQ 244
+I + I G+ + ++ + II+
Sbjct: 264 TINNY-IESGINIEKLVINLIDIIR 287
>UniRef50_Q1QAW7 Cluster: DNA polymerase III, subunits gamma and
tau; n=1; Psychrobacter cryohalolentis K5|Rep: DNA
polymerase III, subunits gamma and tau - Psychrobacter
cryohalolentis (strain K5)
Length = 685
Score = 55.6 bits (128), Expect = 2e-06
Identities = 54/226 (23%), Positives = 110/226 (48%), Gaps = 6/226 (2%)
Frame = -2
Query: 756 KLIILDEADAMTNDAQNALRRIIEKYTENVRFCIICNYLGKIIPALQSRCTRFRFAPLKQ 577
K+ ++DE ++ + NAL + +E+ E+V+F + K+ + SRC +F PL Q
Sbjct: 123 KVYLIDEVHMLSTHSFNALLKTLEEPPEHVKFLLATTDPQKLPITIISRCLQFVLRPLSQ 182
Query: 576 DQIVPRLQEIVTTEGVKMSEGGMKALLTLSGGDMRKVLN-TLQSTWLAYRDVTEDNVYTC 400
+ L ++T E V ++ + L + + G +R L+ T Q+ + + V +
Sbjct: 183 SLLSEHLANVLTQEQVGYTQPALWQLASAAKGSVRDALSLTDQAIAFGQGALDDVTVNSM 242
Query: 399 VGHPLRADIDSILNWLLNENDFSACFKSIQDLK--IAKGLALSDILAEVHTIIQRVKLPP 226
+G AD+ S++ + N +D A I+ ++ + ++ D LAE+ + +L P
Sbjct: 243 LGLIDAADLVSLITDIYN-HDKPAVAAHIEQMRAQMVDASSMFDGLAELLHQLALCQLLP 301
Query: 225 EVLVSLLIKMSDAEARLASGSSERVELAALIASFQI---ARDQVKL 97
EV + +++A+A+ ++ + L ++I AR+ VKL
Sbjct: 302 EV----ALNVNEAQAQHIDQLAQHMSPDVLQLYYEIVVQAREGVKL 343
>UniRef50_A5WFF8 Cluster: DNA polymerase III, subunits gamma and
tau; n=2; Psychrobacter|Rep: DNA polymerase III,
subunits gamma and tau - Psychrobacter sp. PRwf-1
Length = 751
Score = 55.6 bits (128), Expect = 2e-06
Identities = 53/226 (23%), Positives = 108/226 (47%), Gaps = 6/226 (2%)
Frame = -2
Query: 756 KLIILDEADAMTNDAQNALRRIIEKYTENVRFCIICNYLGKIIPALQSRCTRFRFAPLKQ 577
K+ ++DE ++ + NAL + +E+ +V+F + K+ + SRC +F PL Q
Sbjct: 123 KVYLIDEVHMLSTHSFNALLKTLEEPPAHVKFLLATTDPQKLPITIISRCLQFVLRPLPQ 182
Query: 576 DQIVPRLQEIVTTEGVKMSEGGMKALLTLSGGDMRKVLN-TLQSTWLAYRDVTEDNVYTC 400
+ + ++T E + ++ + L + G +R L+ T Q+ +T++ V
Sbjct: 183 QALSDHIANLLTQENIDFTQPALWQLANAAKGSVRDALSLTDQAIAFGQGRLTDETVNDM 242
Query: 399 VGHPLRADIDSILNWLLNEN--DFSACFKSIQDLKIAKGLALSDILAEVHTIIQRVKLPP 226
+G AD+ S+L + N SA + ++ + G ++ D LA++ I V+L P
Sbjct: 243 LGLIDSADLISLLLDIYQGNAPALSAHIEQMRAQLVDAG-SMFDGLADLLHQIAMVQLLP 301
Query: 225 EVLVSLLIKMSDAEARLASGSSERVELAALIASFQI---ARDQVKL 97
V + ++D +A+ + + ++ L +QI R+Q+KL
Sbjct: 302 NV----SLNVNDLQAQQITALAAQIGPDVLQLYYQIVIQGREQIKL 343
>UniRef50_A3V6X7 Cluster: Putative uncharacterized protein; n=1;
Loktanella vestfoldensis SKA53|Rep: Putative
uncharacterized protein - Loktanella vestfoldensis SKA53
Length = 232
Score = 55.6 bits (128), Expect = 2e-06
Identities = 34/118 (28%), Positives = 57/118 (48%)
Frame = -2
Query: 804 QILSFASTRTIFKAGPKLIILDEADAMTNDAQNALRRIIEKYTENVRFCIICNYLGKIIP 625
+IL+ A + + P +I++DE D + R +E++ ++V+ NY+ KI P
Sbjct: 84 KILNMAQIQMWPRGTPAIIVIDEIDEFEDKLPGKTRTFVEQH-KSVQLLASTNYIKKIKP 142
Query: 624 ALQSRCTRFRFAPLKQDQIVPRLQEIVTTEGVKMSEGGMKALLTLSGGDMRKVLNTLQ 451
ALQSR VPR I+T EG +S ++ L+ GD R ++ L+
Sbjct: 143 ALQSRMRCVEVKKPSNANWVPRAHAILTAEGATVSHNDVQQLMQNFTGDARDFIDYLE 200
>UniRef50_A6MVQ4 Cluster: DNA polymerase III; n=1; Rhodomonas
salina|Rep: DNA polymerase III - Rhodomonas salina
(Cryptomonas salina)
Length = 370
Score = 55.6 bits (128), Expect = 2e-06
Identities = 34/143 (23%), Positives = 73/143 (51%)
Frame = -2
Query: 849 ELNAXDDRGIGIVRGQILSFASTRTIFKAGPKLIILDEADAMTNDAQNALRRIIEKYTEN 670
E++A + GI +R I + + K K+ I+DEA ++ +A N+L + +E N
Sbjct: 93 EIDAAKNTGIENIREIIEKVQYSPIMSKY--KVCIIDEAHMLSINAFNSLLKTLESPPIN 150
Query: 669 VRFCIICNYLGKIIPALQSRCTRFRFAPLKQDQIVPRLQEIVTTEGVKMSEGGMKALLTL 490
F + + KI + SRC + F P++ ++ + ++V E ++++ G++ L+ +
Sbjct: 151 TVFILSTTAVNKIPNTIISRCQKLYFQPIRDHDLIIGITKVVYNEKLRITNKGIENLIKI 210
Query: 489 SGGDMRKVLNTLQSTWLAYRDVT 421
+ G R LN ++ + + +T
Sbjct: 211 TKGSFRDALNIVELFSVGEKKIT 233
>UniRef50_A2Y6S3 Cluster: Putative uncharacterized protein; n=6;
Oryza sativa|Rep: Putative uncharacterized protein -
Oryza sativa subsp. indica (Rice)
Length = 1066
Score = 55.6 bits (128), Expect = 2e-06
Identities = 42/170 (24%), Positives = 84/170 (49%)
Frame = -2
Query: 756 KLIILDEADAMTNDAQNALRRIIEKYTENVRFCIICNYLGKIIPALQSRCTRFRFAPLKQ 577
++ I+D+ + + D + + ++IE+ V F +I L + + SRC +F F LK+
Sbjct: 471 RVFIVDDCNTLPPDTWSVISKVIERAPRRVVFILISPNLD-LPHIIVSRCQKFFFPKLKE 529
Query: 576 DQIVPRLQEIVTTEGVKMSEGGMKALLTLSGGDMRKVLNTLQSTWLAYRDVTEDNVYTCV 397
IV LQ I T+EG+ + +K + + S G +R TL L + ++ V V
Sbjct: 530 CDIVNTLQWISTSEGLDVDRDALKLIASRSDGSLRDAEMTLDQLSLLGQRISMSLVQELV 589
Query: 396 GHPLRADIDSILNWLLNENDFSACFKSIQDLKIAKGLALSDILAEVHTII 247
G + +L+ L+ + + K+++D+ G+ +++++ TII
Sbjct: 590 GLVSDDKLVDLLDLALSADTVNT-VKTLRDI-TETGVEPLALMSQLATII 637
>UniRef50_Q4QEE0 Cluster: Putative uncharacterized protein; n=3;
Leishmania|Rep: Putative uncharacterized protein -
Leishmania major
Length = 1292
Score = 55.6 bits (128), Expect = 2e-06
Identities = 29/105 (27%), Positives = 55/105 (52%), Gaps = 2/105 (1%)
Frame = -2
Query: 759 PKLIILDEADAMTNDAQNALRRIIEKYTENVRFCIICNYLGKIIPALQSRCTR-FRFAPL 583
PK +++DE D + N + A +I++ FC+ ++ + L+ C+ + P+
Sbjct: 508 PKCLVIDEMDGIANSSVAAY--LIQQQLHRPVFCLCNDFYVPSLRPLRQHCSHVYHMPPI 565
Query: 582 KQDQIVPRLQEIVTTEGVKMSEG-GMKALLTLSGGDMRKVLNTLQ 451
+ +++ RL+EI EG M + + L+ SGGD+R LN +Q
Sbjct: 566 RPQRLLSRLEEIAWREGATMFDSMALSELIKTSGGDVRSCLNAMQ 610
>UniRef50_UPI000050FCE9 Cluster: COG2812: DNA polymerase III,
gamma/tau subunits; n=1; Brevibacterium linens BL2|Rep:
COG2812: DNA polymerase III, gamma/tau subunits -
Brevibacterium linens BL2
Length = 1148
Score = 55.2 bits (127), Expect = 2e-06
Identities = 34/136 (25%), Positives = 70/136 (51%), Gaps = 2/136 (1%)
Frame = -2
Query: 855 VLELNAXDDRGIGIVRG--QILSFASTRTIFKAGPKLIILDEADAMTNDAQNALRRIIEK 682
V+E++A G+ R + +A R +K + ILDEA +T+ NAL +I+E+
Sbjct: 91 VVEIDAASHNGVDDARDLRERAIYAPARDRYK----VFILDEAHMVTSQGFNALLKIVEE 146
Query: 681 YTENVRFCIICNYLGKIIPALQSRCTRFRFAPLKQDQIVPRLQEIVTTEGVKMSEGGMKA 502
+++F K+I ++SR + F + + + ++++ EGV++++G +
Sbjct: 147 PPPHIKFIFATTEPEKVIGTIRSRTHHYPFRLVPPEALGNYMEDLCNREGVQVAKGVLPL 206
Query: 501 LLTLSGGDMRKVLNTL 454
++ GG +R L+ L
Sbjct: 207 VVRAGGGSVRDTLSVL 222
>UniRef50_Q1GV06 Cluster: DNA polymerase III, subunits gamma and
tau; n=6; Sphingomonadales|Rep: DNA polymerase III,
subunits gamma and tau - Sphingopyxis alaskensis
(Sphingomonas alaskensis)
Length = 565
Score = 55.2 bits (127), Expect = 2e-06
Identities = 44/182 (24%), Positives = 83/182 (45%), Gaps = 6/182 (3%)
Frame = -2
Query: 855 VLELNAXDDRGIGIVRGQILSFASTRTIFKAGPKLIILDEADAMTNDAQNALRRIIEKYT 676
V+E++A + G+ VR +I+ + A K+ I+DE ++ +A NAL + +E+
Sbjct: 121 VIEMDAASNTGVDDVR-EIIEAVRYAAV-SARYKIYIIDEVHMLSRNAFNALLKTLEEPP 178
Query: 675 ENVRFCIICNYLGKIIPALQSRCTRFRFAPLKQDQIVPRLQEIVTTEGVKMSEGGMKALL 496
+V+F + K+ + SRC RF + D + I+ EGV+ + +
Sbjct: 179 PHVKFLFATTEVNKVPVTVLSRCQRFDLRRITPDMLFAHFSAILQKEGVEAEAPAIWLIA 238
Query: 495 TLSGGDMRKVLNTLQSTWLAYRD------VTEDNVYTCVGHPLRADIDSILNWLLNENDF 334
+ G +R L+ L +A+ D V+ + V +G R+ I ++ +L N
Sbjct: 239 NAAEGSVRDGLSILDQA-IAHADLDGGGKVSAEQVRAMLGLSDRSSIAGLMAAILEGNSG 297
Query: 333 SA 328
A
Sbjct: 298 GA 299
>UniRef50_A5IZC8 Cluster: DNA polymerase III subunit gamma and TAU;
n=1; Mycoplasma agalactiae|Rep: DNA polymerase III
subunit gamma and TAU - Mycoplasma agalactiae
Length = 614
Score = 55.2 bits (127), Expect = 2e-06
Identities = 45/186 (24%), Positives = 82/186 (44%), Gaps = 1/186 (0%)
Frame = -2
Query: 855 VLELNAXDDRGIGIVRGQILSFASTRTIFKAGPKLIILDEADAMTNDAQNALRRIIEKYT 676
++E++A + G+ +R ++ K+ I+DE ++ A NAL + +E+
Sbjct: 88 IIEMDAASNNGVDSIRELRDKIQHLPSV--GNYKIYIIDEVHMLSKGAFNALLKTLEEPP 145
Query: 675 ENVRFCIICNYLGKIIPALQSRCTRFRFAPLKQDQIVPRLQEIVTTEGVKMSEGGMKALL 496
+V F KI + SR RF F + D +V +++ I+ EG+K + +
Sbjct: 146 AHVIFIFATTDPQKIPLTILSRVQRFNFRRMSNDTLVKQIKSILEQEGIKYDAEALPYIA 205
Query: 495 TLSGGDMRKVLNTL-QSTWLAYRDVTEDNVYTCVGHPLRADIDSILNWLLNENDFSACFK 319
L+ G MR L+ + Q+ + +V G ++ I+N L N A
Sbjct: 206 RLAVGSMRDALSIIDQANAYGNGYIKFSDVMYSFGITSNDNLIKIINSLYNGKSEEA-LM 264
Query: 318 SIQDLK 301
+QDLK
Sbjct: 265 LLQDLK 270
>UniRef50_A5D6B1 Cluster: DNA polymerase III, gamma/tau subunits;
n=2; Peptococcaceae|Rep: DNA polymerase III, gamma/tau
subunits - Pelotomaculum thermopropionicum SI
Length = 558
Score = 55.2 bits (127), Expect = 2e-06
Identities = 39/157 (24%), Positives = 77/157 (49%), Gaps = 3/157 (1%)
Frame = -2
Query: 855 VLELNAXDDRGIGIVRG--QILSFASTRTIFKAGPKLIILDEADAMTNDAQNALRRIIEK 682
V+E++A +RGI +R + + FA ++ + I+DE +T++A NAL + +E+
Sbjct: 90 VIEIDAASNRGIDEIRDLREKIRFAPAAGRYR----VYIIDEVHMLTSEAFNALLKTLEE 145
Query: 681 YTENVRFCIICNYLGKIIPALQSRCTRFRFAPLKQDQIVPRLQEIVTTEGVKMSEGGMKA 502
+ + ++ + SRC RF F + I+ RL+E+ +++ E ++
Sbjct: 146 PPRHAVLILATTEPHRVPLTILSRCQRFDFRRIIPADIIKRLKEVAAGARLEVEEEALRL 205
Query: 501 LLTLSGGDMRKVLNTL-QSTWLAYRDVTEDNVYTCVG 394
+ + G +R L+ L Q+ VTE V+ +G
Sbjct: 206 IARAAEGGLRDALSILDQAAAFGGMKVTEAGVHQILG 242
>UniRef50_A0JSD4 Cluster: DNA polymerase III, subunits gamma and
tau; n=3; Micrococcineae|Rep: DNA polymerase III,
subunits gamma and tau - Arthrobacter sp. (strain FB24)
Length = 1078
Score = 55.2 bits (127), Expect = 2e-06
Identities = 34/134 (25%), Positives = 67/134 (50%)
Frame = -2
Query: 855 VLELNAXDDRGIGIVRGQILSFASTRTIFKAGPKLIILDEADAMTNDAQNALRRIIEKYT 676
V+E++A G+ R L +T + K+ I+DEA +T+ NAL +I+E+
Sbjct: 93 VIEIDAASHGGVDDARD--LRERATYAPVRDRYKIFIIDEAHMVTSAGFNALLKIVEEPP 150
Query: 675 ENVRFCIICNYLGKIIPALQSRCTRFRFAPLKQDQIVPRLQEIVTTEGVKMSEGGMKALL 496
E+++F K+I ++SR + F + + ++ L+ + E V ++ G + ++
Sbjct: 151 EHIKFIFATTEPDKVIGTIRSRTHHYPFRLVPPEPLMAYLELLCNQENVPVAPGVLSLVI 210
Query: 495 TLSGGDMRKVLNTL 454
GG +R L+ L
Sbjct: 211 RAGGGSVRDSLSVL 224
>UniRef50_Q5V1F7 Cluster: Replication factor C large subunit; n=5;
Halobacteriaceae|Rep: Replication factor C large subunit
- Haloarcula marismortui (Halobacterium marismortui)
Length = 508
Score = 55.2 bits (127), Expect = 2e-06
Identities = 42/155 (27%), Positives = 69/155 (44%), Gaps = 5/155 (3%)
Frame = -2
Query: 852 LELNAXDDRG---IGIVRGQILSFASTRTIFKAGPKLIILDEADAMTNDAQNALRRIIEK 682
+ELNA D R I V G+ + T T G +L+I+DEAD + +A R I
Sbjct: 65 IELNASDSRTKDVINRVAGEAAK-SGTLTAGGGGRRLVIMDEADNIHGNADRGGARAITA 123
Query: 681 YTENVR--FCIICNYLGKIIPALQSRCTRFRFAPLKQDQIVPRLQEIVTTEGVKMSEGGM 508
+ +I N ++ L++ C F + IVP L+++ EGV+ +
Sbjct: 124 LVKEASQPMILIANEYYEMSNGLRNNCQDIEFRDVSPRSIVPVLRDLCRQEGVEYESDAL 183
Query: 507 KALLTLSGGDMRKVLNTLQSTWLAYRDVTEDNVYT 403
+ L + G +R + LQ+ +T D+V T
Sbjct: 184 QELAEQNSGGLRGAVKDLQAIAETTERLTADDVVT 218
>UniRef50_UPI0000E87FCE Cluster: DNA-directed DNA polymerase; n=1;
Methylophilales bacterium HTCC2181|Rep: DNA-directed DNA
polymerase - Methylophilales bacterium HTCC2181
Length = 544
Score = 54.8 bits (126), Expect = 3e-06
Identities = 42/202 (20%), Positives = 92/202 (45%), Gaps = 3/202 (1%)
Frame = -2
Query: 756 KLIILDEADAMTNDAQNALRRIIEKYTENVRFCIICNYLGKIIPALQSRCTRFRFAPLKQ 577
K+ I+DE ++ A NA+ + +E+ E+V+F + K+ + SRC +F +
Sbjct: 121 KVYIIDEVHMLSKSAFNAMLKTLEEPPEHVKFILATTEPQKVPITVLSRCLQFNLKQMTT 180
Query: 576 DQIVPRLQEIVTTEGVKMSEGGMKALLTLSGGDMRKVLNTL-QSTWLAYRDVTEDNVYTC 400
+ I L I+T E + G ++ + + G MR L+ L Q+ + ++ + V
Sbjct: 181 ENIASHLTSILTEEKIGSESGAIQIIAKAANGSMRDALSILDQAIAYSSEKISTEKVTQM 240
Query: 399 VGHPLRADIDSILNWLLNEN--DFSACFKSIQDLKIAKGLALSDILAEVHTIIQRVKLPP 226
+G + I+ L+++N + K++++ + AL+ + VH + +P
Sbjct: 241 LGTIEDDILFDIIKHLIDKNGKGLTDIAKAMEEKNTSFDDALNGLAKLVHELAVCKIIPD 300
Query: 225 EVLVSLLIKMSDAEARLASGSS 160
+ S + + A+ +G +
Sbjct: 301 QYAESSKKNLYEEFAKKLTGET 322
>UniRef50_UPI0000E0E6B7 Cluster: putative DnaX, DNA polymerase III,
gamma/tau subunits; n=1; alpha proteobacterium
HTCC2255|Rep: putative DnaX, DNA polymerase III,
gamma/tau subunits - alpha proteobacterium HTCC2255
Length = 834
Score = 54.8 bits (126), Expect = 3e-06
Identities = 50/208 (24%), Positives = 95/208 (45%), Gaps = 4/208 (1%)
Frame = -2
Query: 756 KLIILDEADAMTNDAQNALRRIIEKYTENVRFCIICNYLGKIIPALQSRCTRFRFAPLKQ 577
K+ ++DE ++ + NAL + +E+ +V+F + K+ + SRC +F L +
Sbjct: 121 KVYLIDEVHMLSKHSFNALLKTLEEPPPHVKFLLATTDPQKLPVTILSRCLQFNLKALSR 180
Query: 576 DQIVPRLQEIVTTEGVKMSEGGMKALLTLSGGDMRKVLN-TLQSTWLAYRDVTEDNVYTC 400
+QI +L ++T E + + L + G MR L+ T Q+ ++ V
Sbjct: 181 EQIQQQLSHVLTQEHINHEPAALAQLARAANGSMRDALSLTDQAIAQGNNQISTVVVSDM 240
Query: 399 VGHPLRADIDSILNWLLNENDFSACFKSIQDL-KIAKGLA--LSDILAEVHTIIQRVKLP 229
+G + I IL+ ++ E D A F+ ++ L + + A L ++++ +H I ++
Sbjct: 241 LGLMDKNQILKILHSMI-EGDKIAVFEQVESLAQTSPNYAHVLDELMSLLHQIAM-TQVV 298
Query: 228 PEVLVSLLIKMSDAEARLASGSSERVEL 145
PEV I S S E V+L
Sbjct: 299 PEVCKLETISARAIYKLAGSISKEHVQL 326
>UniRef50_Q8EFG0 Cluster: DNA polymerase III, gamma and tau
subunits; n=1; Shewanella oneidensis|Rep: DNA polymerase
III, gamma and tau subunits - Shewanella oneidensis
Length = 1002
Score = 54.8 bits (126), Expect = 3e-06
Identities = 42/176 (23%), Positives = 81/176 (46%), Gaps = 1/176 (0%)
Frame = -2
Query: 756 KLIILDEADAMTNDAQNALRRIIEKYTENVRFCIICNYLGKIIPALQSRCTRFRFAPLKQ 577
K+ ++DE ++ + NAL + +E+ E+V+F + K+ + SRC +F L Q
Sbjct: 121 KVYLIDEVHMLSRSSFNALLKTLEEPPEHVKFLLATTDPQKLPVTVLSRCLQFNLKSLTQ 180
Query: 576 DQIVPRLQEIVTTEGVKMSEGGMKALLTLSGGDMRKVLN-TLQSTWLAYRDVTEDNVYTC 400
+I +LQ I+T E + + L + G MR L+ T Q+ V + V +
Sbjct: 181 QEIGTQLQHILTQEQLPFEHEALGLLAKSANGSMRDALSLTDQAIAFGGGTVMLNQVQSM 240
Query: 399 VGHPLRADIDSILNWLLNENDFSACFKSIQDLKIAKGLALSDILAEVHTIIQRVKL 232
+G + +L L + D A +S + +A G ++L + ++ ++ L
Sbjct: 241 LGSIDEQHVLGLLK-ALTDADIGALMQSCAQV-LAYGADAQEVLRSLLELLHQITL 294
>UniRef50_Q6D7Z9 Cluster: DNA polymerase III subunit tau; n=1;
Pectobacterium atrosepticum|Rep: DNA polymerase III
subunit tau - Erwinia carotovora subsp. atroseptica
(Pectobacterium atrosepticum)
Length = 691
Score = 54.8 bits (126), Expect = 3e-06
Identities = 45/195 (23%), Positives = 89/195 (45%), Gaps = 1/195 (0%)
Frame = -2
Query: 756 KLIILDEADAMTNDAQNALRRIIEKYTENVRFCIICNYLGKIIPALQSRCTRFRFAPLKQ 577
K+ ++DE ++ + NAL + +E+ +V+F + K+ + SRC +F L
Sbjct: 121 KVYLIDEVHMLSRHSFNALLKTLEEPPPHVKFLLATTDPQKLPVTILSRCLQFHLKALDV 180
Query: 576 DQIVPRLQEIVTTEGVKMSEGGMKALLTLSGGDMRKVLN-TLQSTWLAYRDVTEDNVYTC 400
+QI L++++ E + ++ L + G +R L+ T Q+ + VT +V
Sbjct: 181 EQIRAHLEQVLQAENLASEPRALQLLARAADGSLRDALSLTDQAIAMGQGQVTTASVSQM 240
Query: 399 VGHPLRADIDSILNWLLNENDFSACFKSIQDLKIAKGLALSDILAEVHTIIQRVKLPPEV 220
+G L + L L + D S+ D A+G+ +L E T++ R+ + +
Sbjct: 241 LG-TLDDEQPLALIEALAKGD-GGQVMSLLDQVAARGVDWESLLVETQTLLHRIAMVQLL 298
Query: 219 LVSLLIKMSDAEARL 175
+L + EAR+
Sbjct: 299 PAALGDDYAAVEARI 313
>UniRef50_A0L8F3 Cluster: DNA polymerase III, subunits gamma and
tau; n=1; Magnetococcus sp. MC-1|Rep: DNA polymerase
III, subunits gamma and tau - Magnetococcus sp. (strain
MC-1)
Length = 605
Score = 54.8 bits (126), Expect = 3e-06
Identities = 28/101 (27%), Positives = 52/101 (51%)
Frame = -2
Query: 756 KLIILDEADAMTNDAQNALRRIIEKYTENVRFCIICNYLGKIIPALQSRCTRFRFAPLKQ 577
K+ ILDE ++ + NAL + +E+ +V+F + KI+P + SRC R+ L +
Sbjct: 125 KIYILDEVHMLSASSFNALLKTLEEPPTHVKFIFATTEVRKILPTILSRCQRYDLRRLDR 184
Query: 576 DQIVPRLQEIVTTEGVKMSEGGMKALLTLSGGDMRKVLNTL 454
D + L ++ E + + G+ A+ + G +R L+ L
Sbjct: 185 DGLARYLAHVLDVEQIAYDQEGLAAISHAADGSVRDALSLL 225
>UniRef50_Q63UU8 Cluster: DNA polymerase III subunit gamma; n=19;
Burkholderia|Rep: DNA polymerase III subunit gamma -
Burkholderia pseudomallei (Pseudomonas pseudomallei)
Length = 825
Score = 54.4 bits (125), Expect = 4e-06
Identities = 59/246 (23%), Positives = 113/246 (45%), Gaps = 4/246 (1%)
Frame = -2
Query: 852 LELNAXDDRGIGIVRGQILSFASTRTIFKAGPKLIILDEADAMTNDAQNALRRIIEKYTE 673
+E++A +RG+ + +L A + A K+ ++DE +TN A NA+ + +E+
Sbjct: 91 VEMDAASNRGVDEMAA-LLERAVYAPV-DARFKVYMIDEVHMLTNHAFNAMLKTLEEPPP 148
Query: 672 NVRFCIICNYLGKIIPALQSRCTRFRFAPLKQDQIVPRLQEIVTTEGVKMSEGGMKALLT 493
+V+F + KI + SRC +F + IV L+ I+ E + ++ L
Sbjct: 149 HVKFILATTDPQKIPVTVLSRCLQFNLKQMPAGHIVSHLERILGEERIAFEPQALRLLAR 208
Query: 492 LSGGDMRKVLN-TLQSTWLAYRDVTEDNVYTCVGHPLRADIDSILNWLLNENDFSACFKS 316
+ G MR L+ T Q+ + +VTE V +G + + +L+ L + +
Sbjct: 209 AAQGSMRDALSLTDQAIAYSANEVTETAVSGMLGTLDQTYMVRLLDALAAAD--GPQILA 266
Query: 315 IQDLKIAKGLALSDILAEVHTIIQRVKLPPEVLVSLLIKMSDAE--ARLAS-GSSERVEL 145
+ D + L+ S L ++ +++ R+ S+L + +A R A S E+V+L
Sbjct: 267 VADEMALRSLSFSAALQDLASLLHRIAWAQFAPASVLDEWPEAADLRRFAELLSPEQVQL 326
Query: 144 AALIAS 127
IA+
Sbjct: 327 YYQIAT 332
>UniRef50_Q39FP4 Cluster: DNA-directed DNA polymerase; n=13;
Burkholderiales|Rep: DNA-directed DNA polymerase -
Burkholderia sp. (strain 383) (Burkholderia cepacia
(strain ATCC 17760/ NCIB 9086 / R18194))
Length = 791
Score = 54.4 bits (125), Expect = 4e-06
Identities = 41/154 (26%), Positives = 74/154 (48%), Gaps = 1/154 (0%)
Frame = -2
Query: 852 LELNAXDDRGIGIVRGQILSFASTRTIFKAGPKLIILDEADAMTNDAQNALRRIIEKYTE 673
+E++A +RG+ + +L A + A K+ ++DE +TN A NA+ + +E+
Sbjct: 91 VEMDAASNRGVDEMAA-LLERAVYAPV-DARFKVYMIDEVHMLTNHAFNAMLKTLEEPPP 148
Query: 672 NVRFCIICNYLGKIIPALQSRCTRFRFAPLKQDQIVPRLQEIVTTEGVKMSEGGMKALLT 493
+V+F + KI + SRC +F + IV L+ I+ E + ++ L
Sbjct: 149 HVKFILATTDPQKIPVTVLSRCLQFNLKQMPAGHIVSHLERILGEEQITFEPQALRLLAR 208
Query: 492 LSGGDMRKVLN-TLQSTWLAYRDVTEDNVYTCVG 394
+ G MR L+ T Q+ + +VTE V +G
Sbjct: 209 AAQGSMRDALSLTDQAIAYSANEVTESAVSGMLG 242
>UniRef50_A6LPM5 Cluster: DNA polymerase III delta' subunit; n=1;
Clostridium beijerinckii NCIMB 8052|Rep: DNA polymerase
III delta' subunit - Clostridium beijerinckii NCIMB 8052
Length = 310
Score = 54.4 bits (125), Expect = 4e-06
Identities = 31/97 (31%), Positives = 52/97 (53%)
Frame = -2
Query: 771 FKAGPKLIILDEADAMTNDAQNALRRIIEKYTENVRFCIICNYLGKIIPALQSRCTRFRF 592
++ K++IL + D +T AQNAL + IE+ V ++ + L I+ ++SRC +R
Sbjct: 87 YEGDKKVLILYKCDKLTVQAQNALLKTIEEPPRGVHLILLSDSLEVILDTIKSRCQIYRL 146
Query: 591 APLKQDQIVPRLQEIVTTEGVKMSEGGMKALLTLSGG 481
PL +++I+ L+E +SE KA L S G
Sbjct: 147 TPLNKEEILSYLEEKYN----NLSEDDKKAALAYSAG 179
>UniRef50_A2A0B1 Cluster: DNA polymerase III subunit gamma/tau; n=1;
Microscilla marina ATCC 23134|Rep: DNA polymerase III
subunit gamma/tau - Microscilla marina ATCC 23134
Length = 575
Score = 54.4 bits (125), Expect = 4e-06
Identities = 56/257 (21%), Positives = 110/257 (42%), Gaps = 3/257 (1%)
Frame = -2
Query: 870 QFSSMVLELNAXDDRGIGIVRGQILSFASTRTIFKAGP-KLIILDEADAMTNDAQNALRR 694
Q S V EL+A + +R + R ++G K+ I+DE ++N A NA +
Sbjct: 87 QGSMNVYELDAASSNSVDDIRNLV---DQVRYPPQSGKRKVYIIDEVHMLSNSAFNAFLK 143
Query: 693 IIEKYTENVRFCIICNYLGKIIPALQSRCTRFRFAPLKQDQIVPRLQEIVTTEGVKMSEG 514
+E+ E V F + KIIP + SRC F F ++ + L I E ++ +
Sbjct: 144 TLEEPPEYVIFILATTEKHKIIPTILSRCQIFDFKRIEVKDMSGHLANIAQKEEIEAEQD 203
Query: 513 GMKALLTLSGGDMRKVLN--TLQSTWLAYRDVTEDNVYTCVGHPLRADIDSILNWLLNEN 340
+ + + G +R L+ L +T+ A R +T +V + H L D + L
Sbjct: 204 ALDLIAQKADGGLRDALSLFDLITTFSADRHITYQSVVKNL-HILDHDYYFKITDALLAQ 262
Query: 339 DFSACFKSIQDLKIAKGLALSDILAEVHTIIQRVKLPPEVLVSLLIKMSDAEARLASGSS 160
D ++ + KG +A + ++ V + + L+++S+ + + +
Sbjct: 263 DMPLVLLYFDEI-LRKGFDGHIFIAGLGAHLRNVMMCKDPATVKLLEVSEKVKQRFAEQA 321
Query: 159 ERVELAALIASFQIARD 109
+ + L+++ +A D
Sbjct: 322 QNASASFLLSALNLAND 338
>UniRef50_A1SDH6 Cluster: DNA polymerase III, subunits gamma and
tau; n=2; Actinomycetales|Rep: DNA polymerase III,
subunits gamma and tau - Nocardioides sp. (strain
BAA-499 / JS614)
Length = 678
Score = 54.4 bits (125), Expect = 4e-06
Identities = 35/136 (25%), Positives = 64/136 (47%), Gaps = 2/136 (1%)
Frame = -2
Query: 855 VLELNAXDDRGIGIVRG--QILSFASTRTIFKAGPKLIILDEADAMTNDAQNALRRIIEK 682
V+E++A G+ R + FA R+ +K + I+DEA +T NAL +++E+
Sbjct: 93 VIEIDAASHGGVDDARDLREKAFFAPVRSKYK----VYIIDEAHMVTTQGFNALLKLVEE 148
Query: 681 YTENVRFCIICNYLGKIIPALQSRCTRFRFAPLKQDQIVPRLQEIVTTEGVKMSEGGMKA 502
++RF K++P ++SR + F + + L E+ EGV + +
Sbjct: 149 PPPHLRFIFATTEPDKVLPTIRSRTHHYPFRLIPPRLLSSYLSELCAKEGVAIDPAALPL 208
Query: 501 LLTLSGGDMRKVLNTL 454
++ GG R L+ L
Sbjct: 209 VVRAGGGSARDTLSVL 224
>UniRef50_A1S561 Cluster: DNA-directed DNA polymerase; n=1;
Shewanella amazonensis SB2B|Rep: DNA-directed DNA
polymerase - Shewanella amazonensis (strain ATCC
BAA-1098 / SB2B)
Length = 909
Score = 54.4 bits (125), Expect = 4e-06
Identities = 34/122 (27%), Positives = 60/122 (49%), Gaps = 1/122 (0%)
Frame = -2
Query: 756 KLIILDEADAMTNDAQNALRRIIEKYTENVRFCIICNYLGKIIPALQSRCTRFRFAPLKQ 577
K+ ++DE ++ + NAL + +E+ E+V+F + K+ + SRC +F L Q
Sbjct: 121 KVYLIDEVHMLSKSSFNALLKTLEEPPEHVKFLLATTDPQKLPVTVLSRCLQFNLKALTQ 180
Query: 576 DQIVPRLQEIVTTEGVKMSEGGMKALLTLSGGDMRKVLN-TLQSTWLAYRDVTEDNVYTC 400
QI +L +++ EG+ E + L + G MR L+ T Q+ +V V T
Sbjct: 181 PQIQAQLAAVLSGEGLGFDEDALSLLAKAAAGSMRDALSLTDQAIAFGGGEVRLAQVQTM 240
Query: 399 VG 394
+G
Sbjct: 241 LG 242
>UniRef50_A3H683 Cluster: AAA ATPase, central region; n=1;
Caldivirga maquilingensis IC-167|Rep: AAA ATPase,
central region - Caldivirga maquilingensis IC-167
Length = 418
Score = 54.4 bits (125), Expect = 4e-06
Identities = 48/174 (27%), Positives = 77/174 (44%), Gaps = 4/174 (2%)
Frame = -2
Query: 849 ELNAXDDRGIGIVRGQILSFASTRTIFKAGPKLIILDEADAMTNDA-QNALRRIIEKYTE 673
E+NA D R +R I + ++F KL++ DE D + A Q + I++ E
Sbjct: 73 EMNASDVRTASRIRETIGKALTQGSLFGFRGKLVLFDEVDGINVRADQGGIYEIVDIVKE 132
Query: 672 -NVRFCIICN--YLGKIIPALQSRCTRFRFAPLKQDQIVPRLQEIVTTEGVKMSEGGMKA 502
V + N + K+ P L+ C + PLK I+ L+ I E VK E ++
Sbjct: 133 AKVPIAMTANDPWDPKLRP-LRDICVVVQVKPLKNRDIIEMLRRICNAEKVKCEEDALRL 191
Query: 501 LLTLSGGDMRKVLNTLQSTWLAYRDVTEDNVYTCVGHPLRADIDSILNWLLNEN 340
+ S GDMR +N LQ T VT + V + D+ +++ +L N
Sbjct: 192 IAESSMGDMRSAINDLQ-TVAETGPVTRERVSLLSSRAHQYDMFRMVDMVLKAN 244
>UniRef50_Q9I3I1 Cluster: DNA polymerase subunits gamma and tau;
n=18; Pseudomonadaceae|Rep: DNA polymerase subunits
gamma and tau - Pseudomonas aeruginosa
Length = 681
Score = 54.0 bits (124), Expect = 5e-06
Identities = 44/196 (22%), Positives = 89/196 (45%), Gaps = 1/196 (0%)
Frame = -2
Query: 756 KLIILDEADAMTNDAQNALRRIIEKYTENVRFCIICNYLGKIIPALQSRCTRFRFAPLKQ 577
K+ ++DE +++ + NAL + +E+ +V+F + K+ + SRC +F +
Sbjct: 121 KVYLIDEVHMLSSHSFNALLKTLEEPPPHVKFLLATTDPQKLPVTILSRCLQFSLKNMPP 180
Query: 576 DQIVPRLQEIVTTEGVKMSEGGMKALLTLSGGDMRKVLN-TLQSTWLAYRDVTEDNVYTC 400
+++V L ++ E V + + L + G MR ++ T Q+ V +V
Sbjct: 181 ERVVEHLTHVLGAENVPFEDDALWLLGRAADGSMRDAMSLTDQAIAFGEGKVLAADVRAM 240
Query: 399 VGHPLRADIDSILNWLLNENDFSACFKSIQDLKIAKGLALSDILAEVHTIIQRVKLPPEV 220
+G + +L LL E D A ++++ L +G +LAE+ ++ RV + +
Sbjct: 241 LGTLDHGQVYGVLQALL-EGDARALLEAVRHL-AEQGPDWGGVLAEILNVLHRVAIAQAL 298
Query: 219 LVSLLIKMSDAEARLA 172
++ D E LA
Sbjct: 299 PEAIDNGQGDRERVLA 314
>UniRef50_Q7MUS1 Cluster: DNA polymerase III, gamma and tau
subunits; n=1; Porphyromonas gingivalis|Rep: DNA
polymerase III, gamma and tau subunits - Porphyromonas
gingivalis (Bacteroides gingivalis)
Length = 602
Score = 54.0 bits (124), Expect = 5e-06
Identities = 37/138 (26%), Positives = 63/138 (45%)
Frame = -2
Query: 873 QQFSSMVLELNAXDDRGIGIVRGQILSFASTRTIFKAGPKLIILDEADAMTNDAQNALRR 694
+Q S + EL+A + + +R I I K K+ I+DE ++ A NA +
Sbjct: 87 EQRSMNIYELDAASNNSVDDIRLLIEQANVPPQIGKY--KIYIIDEVHMLSQQAFNAFLK 144
Query: 693 IIEKYTENVRFCIICNYLGKIIPALQSRCTRFRFAPLKQDQIVPRLQEIVTTEGVKMSEG 514
+E+ V F + KI+P + SRC F F + +I L+ + +EG+K
Sbjct: 145 TLEEPPSYVIFILATTEKHKILPTILSRCQIFDFKRIPPARIEQHLRYVADSEGIKAEAE 204
Query: 513 GMKALLTLSGGDMRKVLN 460
+ + T + G MR L+
Sbjct: 205 ALAIIATKADGGMRDALS 222
>UniRef50_O84338 Cluster: DNA Pol III Gamma and Tau; n=8;
Chlamydiaceae|Rep: DNA Pol III Gamma and Tau - Chlamydia
trachomatis
Length = 466
Score = 54.0 bits (124), Expect = 5e-06
Identities = 31/130 (23%), Positives = 65/130 (50%), Gaps = 2/130 (1%)
Frame = -2
Query: 855 VLELNAXDDRGIGIVR--GQILSFASTRTIFKAGPKLIILDEADAMTNDAQNALRRIIEK 682
V+E++ RGI +R + + F +++ +K + I+DE +T +A N+L + +E+
Sbjct: 92 VIEIDGASHRGIEDIRQINETVLFVPSKSRYK----IYIIDEVHMLTKEAFNSLLKTLEE 147
Query: 681 YTENVRFCIICNYLGKIIPALQSRCTRFRFAPLKQDQIVPRLQEIVTTEGVKMSEGGMKA 502
+V+F + + KI + SRC + + ++ I+ +L I EG + S +
Sbjct: 148 PPVHVKFFLATTEIAKIPNTISSRCQKMLLKRISEETIIDKLATIAKQEGTETSREALLP 207
Query: 501 LLTLSGGDMR 472
+ + G +R
Sbjct: 208 IAKAAQGSLR 217
>UniRef50_Q0C591 Cluster: DNA polymerase III, subunits gamma and
tau; n=1; Hyphomonas neptunium ATCC 15444|Rep: DNA
polymerase III, subunits gamma and tau - Hyphomonas
neptunium (strain ATCC 15444)
Length = 578
Score = 54.0 bits (124), Expect = 5e-06
Identities = 36/134 (26%), Positives = 65/134 (48%)
Frame = -2
Query: 855 VLELNAXDDRGIGIVRGQILSFASTRTIFKAGPKLIILDEADAMTNDAQNALRRIIEKYT 676
VLEL+A G+ +R +L A + A K+ I+DE ++N + NAL + +E+
Sbjct: 128 VLELDAASRTGVADMR-DLLDSARYGPV-SARYKVYIIDEVHMLSNASFNALLKTLEEPP 185
Query: 675 ENVRFCIICNYLGKIIPALQSRCTRFRFAPLKQDQIVPRLQEIVTTEGVKMSEGGMKALL 496
+++F + K+ + SRC RF L ++ L + +EG +SE + +
Sbjct: 186 PHLKFIFATTEIRKVPVTVLSRCQRFDLKRLDSGELSRHLGNVAQSEGANVSEEALALIA 245
Query: 495 TLSGGDMRKVLNTL 454
+ G +R L+ L
Sbjct: 246 RAAEGSVRDGLSLL 259
>UniRef50_A6FVT5 Cluster: Replication factor C small subunit; n=1;
Roseobacter sp. AzwK-3b|Rep: Replication factor C small
subunit - Roseobacter sp. AzwK-3b
Length = 234
Score = 54.0 bits (124), Expect = 5e-06
Identities = 35/108 (32%), Positives = 54/108 (50%), Gaps = 7/108 (6%)
Frame = -2
Query: 753 LIILDEADAMTNDAQNALRRIIEKYTENVRFCIICN-------YLGKIIPALQSRCTRFR 595
+I+++E D M D Q R +EK+ + + + N KI+PALQSR R
Sbjct: 100 IILINEFDEMDRDTQAKFRAWMEKH-KGIELVVTTNEQPGVQGVKQKIMPALQSRFERVE 158
Query: 594 FAPLKQDQIVPRLQEIVTTEGVKMSEGGMKALLTLSGGDMRKVLNTLQ 451
AP +PR Q I+ EG +S ++ LL+ GD+R +L L+
Sbjct: 159 LAPPSLQDCLPRAQAIMQQEGFAVSTHALQMLLSTFNGDIRDMLPRLE 206
>UniRef50_A6FTR6 Cluster: DNA-directed DNA polymerase gamma/tau
subunit; n=1; Roseobacter sp. AzwK-3b|Rep: DNA-directed
DNA polymerase gamma/tau subunit - Roseobacter sp.
AzwK-3b
Length = 211
Score = 54.0 bits (124), Expect = 5e-06
Identities = 32/105 (30%), Positives = 49/105 (46%)
Frame = -2
Query: 747 ILDEADAMTNDAQNALRRIIEKYTENVRFCIICNYLGKIIPALQSRCTRFRFAPLKQDQI 568
I+DE D + + Q LR ++ ++ F N L + L RC + D
Sbjct: 103 IIDEVDQIPPEIQYKLRWEVDMRSDQGCFIFTTNKLHNVEKGLVDRCDVIELPAVNADHW 162
Query: 567 VPRLQEIVTTEGVKMSEGGMKALLTLSGGDMRKVLNTLQSTWLAY 433
R + ++ EGV+MS+ +KALL G +R +L TLQ L Y
Sbjct: 163 FDRARWMLEQEGVRMSDAKLKALLDTCDGSIRDLLRTLQDAALRY 207
>UniRef50_A5Z8F9 Cluster: Putative uncharacterized protein; n=2;
Clostridiales|Rep: Putative uncharacterized protein -
Eubacterium ventriosum ATCC 27560
Length = 541
Score = 54.0 bits (124), Expect = 5e-06
Identities = 42/157 (26%), Positives = 74/157 (47%), Gaps = 3/157 (1%)
Frame = -2
Query: 855 VLELNAXDDRGIGIVRGQILSFASTRTIFKAGPKLI-ILDEADAMTNDAQNALRRIIEKY 679
V+E++A + G+ +R QI +G + I+DE ++ A NAL + +E+
Sbjct: 105 VIEIDAASNNGVDNIR-QIRDEIQYSP--SSGKYTVYIIDEVHMLSIGAFNALLKTLEEP 161
Query: 678 TENVRFCIICNYLGKIIPALQSRCTRFRFAPLKQDQIVPRLQEIVTTEGVKMSEGGMKAL 499
V F + KI + SRC R+ F + D I RL E++ E +++ + ++ +
Sbjct: 162 PAYVIFILATTEPHKIPITILSRCQRYDFKRISIDTIAARLSELMEKESIEVEDKAIRYV 221
Query: 498 LTLSGGDMRKVLNTLQSTWLAY--RDVTEDNVYTCVG 394
+ G MR L+ L Y + +T DNV +G
Sbjct: 222 AKAADGSMRDALSLLDQCIAFYLGQKLTYDNVLDVLG 258
Database: uniref50
Posted date: Oct 5, 2007 11:19 AM
Number of letters in database: 575,637,011
Number of sequences in database: 1,657,284
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 786,219,718
Number of Sequences: 1657284
Number of extensions: 14603584
Number of successful extensions: 38620
Number of sequences better than 10.0: 500
Number of HSP's better than 10.0 without gapping: 37054
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 38503
length of database: 575,637,011
effective HSP length: 100
effective length of database: 409,908,611
effective search space used: 79522270534
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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