Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P06_pT_F01
(886 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC27E2.10c |rfc3|SPAPJ698.01c|DNA replication factor C complex... 243 3e-65
SPAC23D3.02 |rfc2||DNA replication factor C complex subunit Rfc2... 166 4e-42
SPAC1687.03c |rfc4||DNA replication factor C complex subunit Rfc... 142 6e-35
SPBC83.14c |rfc5||DNA replication factor C complex subunit Rfc5 ... 67 3e-12
SPBC23E6.07c |rfc1||DNA replication factor C complex subunit Rfc... 42 1e-04
SPBC902.02c |ctf18|chl12|DNA replication factor C complex subuni... 42 2e-04
SPAC23D3.13c |||guanyl-nucleotide exchange factor|Schizosaccharo... 31 0.29
SPAC23C11.13c |hpt1||xanthine phosphoribosyltransferase |Schizos... 27 2.7
SPAC23C4.03 |||haspin related kinase|Schizosaccharomyces pombe|c... 27 2.7
SPAC18G6.05c |||translation elongation regulator Gcn1 |Schizosac... 27 4.7
SPCC550.11 |||karyopherin|Schizosaccharomyces pombe|chr 3|||Manual 26 8.2
>SPAC27E2.10c |rfc3|SPAPJ698.01c|DNA replication factor C complex
subunit Rfc3 |Schizosaccharomyces pombe|chr 1|||Manual
Length = 342
Score = 243 bits (594), Expect = 3e-65
Identities = 123/259 (47%), Positives = 170/259 (65%)
Frame = -2
Query: 885 MYTPQQFSSMVLELNAXDDRGIGIVRGQILSFASTRTIFKAGPKLIILDEADAMTNDAQN 706
+Y P + + ++ELNA DDRGI VR QI +FASTR IF + K+IILDEADAMT AQN
Sbjct: 80 IYGPN-YRNQLMELNASDDRGIDAVREQIKNFASTRQIFASTFKMIILDEADAMTLAAQN 138
Query: 705 ALRRIIEKYTENVRFCIICNYLGKIIPALQSRCTRFRFAPLKQDQIVPRLQEIVTTEGVK 526
ALRR+IEKYT+NVRFCIICNY+ KI PA+QSRCTRFRF PL +I + ++ +E
Sbjct: 139 ALRRVIEKYTKNVRFCIICNYINKISPAIQSRCTRFRFQPLPPKEIEKTVDHVIQSEHCN 198
Query: 525 MSEGGMKALLTLSGGDMRKVLNTLQSTWLAYRDVTEDNVYTCVGHPLRADIDSILNWLLN 346
+ A+L LS GDMRK LN LQ+ AY + +Y CVGHP +DID L ++N
Sbjct: 199 IDPDAKMAVLRLSKGDMRKALNILQACHAAYDHIDVSAIYNCVGHPHPSDIDYFLKSIMN 258
Query: 345 ENDFSACFKSIQDLKIAKGLALSDILAEVHTIIQRVKLPPEVLVSLLIKMSDAEARLASG 166
+ +F F +I +K KGLAL DIL + + +++ P + +L +++ E R++ G
Sbjct: 259 D-EFVIAFNTISSIKQQKGLALQDILTCIFEALDELEIKPNAKIFILDQLATIEHRMSFG 317
Query: 165 SSERVELAALIASFQIARD 109
SE+++L+A+IAS + D
Sbjct: 318 CSEKIQLSAMIASIKTGVD 336
>SPAC23D3.02 |rfc2||DNA replication factor C complex subunit
Rfc2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 340
Score = 166 bits (403), Expect = 4e-42
Identities = 98/265 (36%), Positives = 151/265 (56%), Gaps = 9/265 (3%)
Frame = -2
Query: 885 MYTPQQFSSMVLELNAXDDRGIGIVRGQILSFASTRTIFKAGP------KLIILDEADAM 724
++ PQ S VLELNA D+RGI I+R ++ SFA T K K+IILDEAD+M
Sbjct: 76 LFGPQLMKSRVLELNASDERGISIIREKVKSFAKTTVTNKVDGYPCPPFKIIILDEADSM 135
Query: 723 TNDAQNALRRIIEKYTENVRFCIICNYLGKIIPALQSRCTRFRFAPLKQDQIVPRLQEIV 544
T DAQ ALRR +E Y RFC+ICNY+ +II L SRC+++RF PL + +V RL+ I
Sbjct: 136 TQDAQAALRRTMESYARITRFCLICNYMTRIIDPLSSRCSKYRFKPLDNENMVKRLEFIA 195
Query: 543 TTEGVKMSEGGMKALLTLSGGDMRKVLNTLQSTWLAYR--DVTEDNVYTCVGHPLRADID 370
+ V M G + AL+ SGGDMRK + LQS ++ +T +V G I
Sbjct: 196 ADQAVSMEPGVVNALVECSGGDMRKAITFLQSAANLHQGTPITISSVEELAGAVPYNIIR 255
Query: 369 SILNWLLNENDFSACFKSIQDLKIAKGLALSDILAEVHTIIQRVK-LPPEVLVSLLIKMS 193
S+L+ +N + +++ A+G + IL+++H ++ + + L V + +K+S
Sbjct: 256 SLLDTAYTKN--VSNIETLSRDVAAEGYSTGIILSQLHDVLLKEETLSSPVKYKIFMKLS 313
Query: 192 DAEARLASGSSERVELAALIASFQI 118
+ + RL G+ E ++L L++S +
Sbjct: 314 EVDKRLNDGADETLQLLDLLSSISV 338
>SPAC1687.03c |rfc4||DNA replication factor C complex subunit
Rfc4|Schizosaccharomyces pombe|chr 1|||Manual
Length = 342
Score = 142 bits (344), Expect = 6e-35
Identities = 85/254 (33%), Positives = 136/254 (53%), Gaps = 2/254 (0%)
Frame = -2
Query: 855 VLELNAXDDRGIGIVRGQILSFASTRTIFKAGP-KLIILDEADAMTNDAQNALRRIIEKY 679
VLELNA D+RGI +VR +I +FA + I G K+IILDEAD+MT AQ ALRR +E Y
Sbjct: 87 VLELNASDERGIDVVRNRIKAFAQKKVILPPGRHKIIILDEADSMTAGAQQALRRTMEIY 146
Query: 678 TENVRFCIICNYLGKIIPALQSRCTRFRFAPLKQDQIVPRLQEIVTTEGVKMSEGGMKAL 499
+ RF + CN KII +QSRC R++ L Q++ RL I E V ++ G+ AL
Sbjct: 147 SNTTRFALACNQSNKIIEPIQSRCAILRYSRLTDQQVLQRLLNICKAEKVNYTDDGLAAL 206
Query: 498 LTLSGGDMRKVLNTLQSTWLAYRDVTEDNVYTCVGHPLRADIDSILNWLLNENDFSACFK 319
+ + GDMR+ +N LQST + V +NV+ P I ++L + +
Sbjct: 207 IMTAEGDMRQAVNNLQSTVAGFGLVNGENVFRVADQPSPVAIHAMLT-ACQSGNIDVALE 265
Query: 318 SIQDLKIAKGLALSDILAEVHTIIQRVKLPPEV-LVSLLIKMSDAEARLASGSSERVELA 142
+Q + G + DI+ + +++ + PE + +L ++ + G ++L+
Sbjct: 266 KLQGI-WDLGFSAVDIVTNMFRVVKTMDSIPEFSRLEMLKEIGQTHMIILEGVQTLLQLS 324
Query: 141 ALIASFQIARDQVK 100
L+ ++A+ Q+K
Sbjct: 325 GLVC--RLAKSQMK 336
>SPBC83.14c |rfc5||DNA replication factor C complex subunit Rfc5
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 358
Score = 67.3 bits (157), Expect = 3e-12
Identities = 32/103 (31%), Positives = 61/103 (59%)
Frame = -2
Query: 756 KLIILDEADAMTNDAQNALRRIIEKYTENVRFCIICNYLGKIIPALQSRCTRFRFAPLKQ 577
K+++++ AD +T DAQ ALRR +EKY+ N+R +I N KII ++SR R A
Sbjct: 129 KVVVINVADELTRDAQAALRRTMEKYSNNIRLILIANSTSKIIEPIRSRTLMVRVAAPTP 188
Query: 576 DQIVPRLQEIVTTEGVKMSEGGMKALLTLSGGDMRKVLNTLQS 448
++I+ + +I+T +G++ + + + ++RK + L++
Sbjct: 189 EEIILVMSKILTAQGLEAPDSLLNNIANNCDRNLRKAILLLET 231
>SPBC23E6.07c |rfc1||DNA replication factor C complex subunit
Rfc1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 934
Score = 41.9 bits (94), Expect = 1e-04
Identities = 44/165 (26%), Positives = 75/165 (45%), Gaps = 17/165 (10%)
Frame = -2
Query: 855 VLELNAXDDRGIGIVRGQILSFASTRTIF-----KAGPK-------LIILDEADAMTNDA 712
VLELNA D R ++ Q+ ++++ KA P ++I+DE D M++
Sbjct: 437 VLELNASDTRSKRLLDEQLFGVTDSQSLAGYFGTKANPVDMAKSRLVLIMDEIDGMSSGD 496
Query: 711 QNA---LRRIIEKYTENVRFCIICNYLG--KIIPALQSRCTRFRFAPLKQDQIVPRLQEI 547
+ L II+K + ICN K+ P L RF + + R+ I
Sbjct: 497 RGGVGQLNMIIKK--SMIPIICICNDRAHPKLRP-LDRTTFDLRFRRPDANSMRSRIMSI 553
Query: 546 VTTEGVKMSEGGMKALLTLSGGDMRKVLNTLQSTWLAYRDVTEDN 412
EG+K+S + L+ + DMR+++N L + L+ ++T N
Sbjct: 554 AYREGLKLSPQAVDQLVQGTQSDMRQIINLLSTYKLSCSEMTPQN 598
>SPBC902.02c |ctf18|chl12|DNA replication factor C complex subunit
Ctf18|Schizosaccharomyces pombe|chr 2|||Manual
Length = 960
Score = 41.5 bits (93), Expect = 2e-04
Identities = 44/169 (26%), Positives = 68/169 (40%), Gaps = 20/169 (11%)
Frame = -2
Query: 855 VLELNAXDDRGIGIVRGQILSFASTRTIFKAGPKLIILDEADAMTNDAQNALRRII---E 685
VLE+NA DDR V ++ S S + + P +I+DE D AL ++ E
Sbjct: 444 VLEINASDDRTAHTVHEKVSSAISNHSALSSQPTCVIVDEIDGGDPAFVRALLSLLESDE 503
Query: 684 KYTEN------------VRFC--IICNYLGKIIPA---LQSRCTRFRFAPLKQDQIVPRL 556
K TE + C IIC PA L+ F P Q +V RL
Sbjct: 504 KATEYSQAGNSKKKKKFKKLCRPIICICNDLYTPALRPLRPYAQIIYFRPPPQASLVGRL 563
Query: 555 QEIVTTEGVKMSEGGMKALLTLSGGDMRKVLNTLQSTWLAYRDVTEDNV 409
+ I E + + + L + D+R +N+LQ L + + + +
Sbjct: 564 RTICRNENIAVDSRSLTLLTDIYNSDIRSCINSLQLLSLNNKRIDSETI 612
>SPAC23D3.13c |||guanyl-nucleotide exchange factor|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1616
Score = 30.7 bits (66), Expect = 0.29
Identities = 24/88 (27%), Positives = 42/88 (47%), Gaps = 1/88 (1%)
Frame = -2
Query: 492 LSGGDMRKVLNTLQSTWLAYRDVTEDNV-YTCVGHPLRADIDSILNWLLNENDFSACFKS 316
L+ D L+ + + + R + + NV T VG L ++ L + + +DFS + S
Sbjct: 946 LASLDTSNYLDLMDTLLVFCRQLEDANVSLTAVG--LFWNVSDTLKNMFSTSDFSCAYNS 1003
Query: 315 IQDLKIAKGLALSDILAEVHTIIQRVKL 232
++DL + +IL EV I+ V L
Sbjct: 1004 VEDLYAFTSMKSKEILPEVLWIMLLVHL 1031
>SPAC23C11.13c |hpt1||xanthine phosphoribosyltransferase
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 206
Score = 27.5 bits (58), Expect = 2.7
Identities = 14/54 (25%), Positives = 24/54 (44%)
Frame = -2
Query: 825 GIGIVRGQILSFASTRTIFKAGPKLIILDEADAMTNDAQNALRRIIEKYTENVR 664
G+ + R Q L F++ + G ++I+DE D ALR + E +
Sbjct: 82 GLEVKRTQWLDFSTLGMVDLVGKNILIVDEVDDTRTTLHYALRELQRDVAEQAK 135
>SPAC23C4.03 |||haspin related kinase|Schizosaccharomyces pombe|chr
1|||Manual
Length = 488
Score = 27.5 bits (58), Expect = 2.7
Identities = 11/28 (39%), Positives = 17/28 (60%), Gaps = 2/28 (7%)
Frame = -3
Query: 875 HSNLVRW--CWNLMLXTIEALALLEVRY 798
H L W CW++ T++ L+L+E RY
Sbjct: 272 HFELRSWRECWSVFYETLKILSLVETRY 299
>SPAC18G6.05c |||translation elongation regulator Gcn1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 2670
Score = 26.6 bits (56), Expect = 4.7
Identities = 16/62 (25%), Positives = 30/62 (48%)
Frame = -2
Query: 795 SFASTRTIFKAGPKLIILDEADAMTNDAQNALRRIIEKYTENVRFCIICNYLGKIIPALQ 616
S R + P+L+ L E++ + A +ALR II + + + +I + K + A
Sbjct: 2015 SILGDRAVDDVLPQLLKLLESENQSEQALSALREIISRRSSTIFPVLIPTLIKKPVSAFN 2074
Query: 615 SR 610
+R
Sbjct: 2075 AR 2076
>SPCC550.11 |||karyopherin|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1029
Score = 25.8 bits (54), Expect = 8.2
Identities = 17/43 (39%), Positives = 22/43 (51%)
Frame = +2
Query: 275 SLSANPFAIFKSCMDLKQAEKSFSFSNQLSMLSISARRGWPTQ 403
+LSA+P K+ + LKQ EK SF + L S PTQ
Sbjct: 10 TLSADPNTRTKAELSLKQLEKEPSFVLAVLQLLSSQEISLPTQ 52
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,304,905
Number of Sequences: 5004
Number of extensions: 64208
Number of successful extensions: 185
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 179
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 181
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 444486180
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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