Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P06_pT_E22
         (765 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC1223.09 |||uricase |Schizosaccharomyces pombe|chr 3|||Manual       28   1.3  
SPBC2A9.06c |||di-trans,poly-cis-decaprenylcistransferase|Schizo...    26   6.8  
SPBC409.15 |||rRNA processing protein Tsr2 |Schizosaccharomyces ...    25   9.0  
SPCC1620.11 |mug87||nucleoporin Nic96 homolog|Schizosaccharomyce...    25   9.0  

>SPCC1223.09 |||uricase |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 296

 Score = 28.3 bits (60), Expect = 1.3
 Identities = 17/48 (35%), Positives = 22/48 (45%)
 Frame = +2

Query: 389 YVREPTAHRTTVILHKLDFCAKTKISTNYEATVHF*LYSPLILDFSSA 532
           YV++    +T V   K D C KTK  T YE  V   L   L   ++ A
Sbjct: 6   YVKQCAYGKTLVRFMKKDICPKTKTHTVYEMDVQSLLTGELEESYTKA 53


>SPBC2A9.06c |||di-trans,
           poly-cis-decaprenylcistransferase|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 258

 Score = 25.8 bits (54), Expect = 6.8
 Identities = 13/33 (39%), Positives = 19/33 (57%), Gaps = 1/33 (3%)
 Frame = -3

Query: 259 PYYLSFDYCTYYMIDKCIILFFNQHDFV-FKLH 164
           P+YL  D CT ++ + C     NQ+D V  K+H
Sbjct: 122 PFYLGGDKCTVHVTNPCSPDEKNQNDCVDLKVH 154


>SPBC409.15 |||rRNA processing protein Tsr2 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 179

 Score = 25.4 bits (53), Expect = 9.0
 Identities = 8/30 (26%), Positives = 16/30 (53%)
 Frame = +2

Query: 617 LSRSYRPTSVVDDQPYIISRQIXEIXNGSC 706
           L   +   S+ DD PYI+++ +  +   +C
Sbjct: 73  LQDEFNVGSIEDDSPYILAQDLVNVWKAAC 102


>SPCC1620.11 |mug87||nucleoporin Nic96 homolog|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 851

 Score = 25.4 bits (53), Expect = 9.0
 Identities = 14/40 (35%), Positives = 22/40 (55%)
 Frame = +2

Query: 614 GLSRSYRPTSVVDDQPYIISRQIXEIXNGSCHVXRDRVLI 733
           GL R+   +SVV ++P  I   + E  +G   +  DR+LI
Sbjct: 513 GLLRTAPSSSVVSNEPGKIQSMLVETKSGKPSLEFDRLLI 552


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,777,976
Number of Sequences: 5004
Number of extensions: 54082
Number of successful extensions: 119
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 117
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 119
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 367316502
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)