Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P06_pT_E21
         (861 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC17A2.06c |vps8||WD repeat protein Vps8|Schizosaccharomyces p...    27   3.4  
SPBC354.11c |||sequence orphan|Schizosaccharomyces pombe|chr 2||...    26   7.9  
SPBC15C4.04c |||amino acid permease, unknown 10|Schizosaccharomy...    26   7.9  

>SPAC17A2.06c |vps8||WD repeat protein Vps8|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1272

 Score = 27.1 bits (57), Expect = 3.4
 Identities = 12/38 (31%), Positives = 20/38 (52%)
 Frame = -2

Query: 803 HFDISAVVENRWDMLL*RHQCHITASCALASEYSKSFL 690
           HFDI+  + + WD  L +   HI+  C    +Y ++ L
Sbjct: 856 HFDIATTLLSCWDHQLYQVILHISFKCGRYEDYIEAIL 893


>SPBC354.11c |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 172

 Score = 25.8 bits (54), Expect = 7.9
 Identities = 17/56 (30%), Positives = 27/56 (48%)
 Frame = +3

Query: 603 PTEYILCKRAFPYSRLLYSRIFTEHITHE*KAFTVFTS*SARSCYVTLMTSQQHIP 770
           PT ++L  +   YSRL + RI   HI +      +F S ++ +   T+ T    IP
Sbjct: 116 PTVFLLFFKF--YSRLFFFRIIPSHILYNSFRIVLFLSHASPAILHTIFTFTLSIP 169


>SPBC15C4.04c |||amino acid permease, unknown 10|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 542

 Score = 25.8 bits (54), Expect = 7.9
 Identities = 10/21 (47%), Positives = 12/21 (57%)
 Frame = -3

Query: 316 IRLAYKEIFSREFSNLVAFFF 254
           + L YK +F REFS    F F
Sbjct: 49  LELGYKPVFKREFSTWATFSF 69


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,474,543
Number of Sequences: 5004
Number of extensions: 71348
Number of successful extensions: 142
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 138
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 142
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 428468660
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)