Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P06_pT_E21
         (861 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

05_03_0684 - 16944937-16945959,16946074-16946469,16948055-16948330     29   4.8  
07_03_0340 + 16949105-16949109,16949328-16949436,16949547-169496...    29   6.3  

>05_03_0684 - 16944937-16945959,16946074-16946469,16948055-16948330
          Length = 564

 Score = 29.1 bits (62), Expect = 4.8
 Identities = 12/20 (60%), Positives = 16/20 (80%)
 Frame = +2

Query: 755 TTTYPSGSQPQRKCQSVSRN 814
           TTT P+GS P R+ Q+VSR+
Sbjct: 78  TTTLPTGSGPPRRLQAVSRD 97


>07_03_0340 +
           16949105-16949109,16949328-16949436,16949547-16949642,
           16949685-16949771,16952658-16953299
          Length = 312

 Score = 28.7 bits (61), Expect = 6.3
 Identities = 15/54 (27%), Positives = 25/54 (46%)
 Frame = -3

Query: 367 TKWAVSSSTHPSYKKVPIRLAYKEIFSREFSNLVAFFFLIREVKELLL*IYYWC 206
           T W  +        + P+ +A +EI +  F N  A   + R + E+L  +YY C
Sbjct: 209 TYWFENQRASRIISRTPMEVAVREIATYWFENQRASRIISRTLMEVLELVYYMC 262


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,410,361
Number of Sequences: 37544
Number of extensions: 424653
Number of successful extensions: 752
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 744
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 752
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2409218220
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)