Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P06_pT_E16
         (845 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

05_07_0288 + 29001228-29001399,29001493-29001723,29001817-290019...    32   0.66 
01_05_0735 - 24749975-24750601,24751411-24751541,24752150-247523...    30   2.7  
01_06_1400 - 37036957-37037705,37037809-37037995,37038108-370382...    29   3.5  

>05_07_0288 +
           29001228-29001399,29001493-29001723,29001817-29001914,
           29002687-29002873,29003068-29003198,29003282-29003908
          Length = 481

 Score = 31.9 bits (69), Expect = 0.66
 Identities = 12/26 (46%), Positives = 16/26 (61%)
 Frame = -3

Query: 585 IKKKTFTYKIFVVTFYLNTISGYWAF 508
           +K     Y + + TFYL  I+GYWAF
Sbjct: 285 MKALVLCYTVVLFTFYLPAITGYWAF 310


>01_05_0735 -
           24749975-24750601,24751411-24751541,24752150-24752336,
           24753801-24753898,24754182-24754689
          Length = 516

 Score = 29.9 bits (64), Expect = 2.7
 Identities = 10/26 (38%), Positives = 15/26 (57%)
 Frame = -3

Query: 585 IKKKTFTYKIFVVTFYLNTISGYWAF 508
           +K     Y +    FY+ +I+GYWAF
Sbjct: 320 MKALVLCYSVIAFAFYIPSITGYWAF 345


>01_06_1400 -
           37036957-37037705,37037809-37037995,37038108-37038205,
           37039562-37039655
          Length = 375

 Score = 29.5 bits (63), Expect = 3.5
 Identities = 11/19 (57%), Positives = 13/19 (68%)
 Frame = -3

Query: 564 YKIFVVTFYLNTISGYWAF 508
           Y + V TF+   ISGYWAF
Sbjct: 190 YAVVVTTFFSVAISGYWAF 208


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,076,623
Number of Sequences: 37544
Number of extensions: 298925
Number of successful extensions: 440
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 432
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 440
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2350456800
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)