Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P06_pT_E16
         (845 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AL023847-5|CAA19551.1|  247|Caenorhabditis elegans Hypothetical ...    29   5.5  
Z71185-4|CAA94909.2|  483|Caenorhabditis elegans Hypothetical pr...    28   7.3  
AC024803-1|AAL05589.4|  433|Caenorhabditis elegans Hypothetical ...    28   7.3  

>AL023847-5|CAA19551.1|  247|Caenorhabditis elegans Hypothetical
           protein Y57A10C.9 protein.
          Length = 247

 Score = 28.7 bits (61), Expect = 5.5
 Identities = 16/47 (34%), Positives = 24/47 (51%), Gaps = 1/47 (2%)
 Frame = +3

Query: 600 ITYLCLKFRIKISRISFILDL-IIYCMWRQNI*RPIQYNLFVFFKAG 737
           +T LC    +  + +SFI +  IIYC WR+ I  P    L ++   G
Sbjct: 13  VTELCC---LTAASLSFIFNAYIIYCFWRKKIPSPENLRLALYLAIG 56


>Z71185-4|CAA94909.2|  483|Caenorhabditis elegans Hypothetical
           protein C35A5.7 protein.
          Length = 483

 Score = 28.3 bits (60), Expect = 7.3
 Identities = 11/25 (44%), Positives = 16/25 (64%)
 Frame = +1

Query: 703 YNIIYLYFLRQEFHSSIIFHNTMIY 777
           YNI + YFL     +++IFH T I+
Sbjct: 96  YNIYWAYFLYYHSQATVIFHATSIW 120


>AC024803-1|AAL05589.4|  433|Caenorhabditis elegans Hypothetical
           protein Y51H7BM.1 protein.
          Length = 433

 Score = 28.3 bits (60), Expect = 7.3
 Identities = 11/28 (39%), Positives = 17/28 (60%)
 Frame = +3

Query: 717 FVFFKAGISFFNNIPQYYDLRNNVIVND 800
           F+F K G ++F+    + DL N  +VND
Sbjct: 259 FMFEKTGFAWFDRFLTWKDLENGYVVND 286


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,054,582
Number of Sequences: 27780
Number of extensions: 349638
Number of successful extensions: 749
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 713
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 749
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2098003600
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)