Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P06_pT_E14
         (846 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC162.09c |hmg1||3-hydroxy-3-methylglutaryl-CoA reductase|Schi...    27   4.4  
SPCC550.09 |||peroxin Pex32 |Schizosaccharomyces pombe|chr 3|||M...    27   4.4  
SPBP23A10.02 |||conserved fungal protein|Schizosaccharomyces pom...    26   5.8  
SPAC959.05c |||protein disulfide isomerase |Schizosaccharomyces ...    26   7.7  

>SPCC162.09c |hmg1||3-hydroxy-3-methylglutaryl-CoA
           reductase|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1053

 Score = 26.6 bits (56), Expect = 4.4
 Identities = 16/41 (39%), Positives = 19/41 (46%)
 Frame = -3

Query: 448 HILFSSSVLIVNDFRAFGISLYFNFIFREIYQ*LKLSFFFV 326
           H  F   VL +  +  FGI  +F F    IY  L L  FFV
Sbjct: 320 HFSFGIVVLAIFSYCNFGIKQFFLFAAVMIYDLLLLFSFFV 360


>SPCC550.09 |||peroxin Pex32 |Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 535

 Score = 26.6 bits (56), Expect = 4.4
 Identities = 8/25 (32%), Positives = 15/25 (60%)
 Frame = -2

Query: 776 YGLVLKICIWNSTKYFIILYLAITW 702
           + L+LK+ +W +  Y+ +  L  TW
Sbjct: 25  FDLILKVLLWTAPWYYCLTTLFFTW 49


>SPBP23A10.02 |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 132

 Score = 26.2 bits (55), Expect = 5.8
 Identities = 16/48 (33%), Positives = 26/48 (54%)
 Frame = -2

Query: 764 LKICIWNSTKYFIILYLAITWDNNPSRCAHRNXXXXXIDNSNSQRNTN 621
           L IC+W S  +F++  LA    NN  + + ++      DNSN+Q  +N
Sbjct: 53  LAICLWLSLTWFLV-ELAHARVNNDLQMSSQS-ANKNDDNSNNQNPSN 98


>SPAC959.05c |||protein disulfide isomerase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 632

 Score = 25.8 bits (54), Expect = 7.7
 Identities = 12/28 (42%), Positives = 15/28 (53%)
 Frame = +3

Query: 387 REIPKALKSLTIKTDEEKSMCS*LVIKK 470
           R   + LK   +  DEEK MC+   IKK
Sbjct: 224 RNTDERLKMAQVNCDEEKEMCNHFHIKK 251


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,919,835
Number of Sequences: 5004
Number of extensions: 53466
Number of successful extensions: 77
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 77
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 77
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 418457710
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)