Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P06_pT_E07
(461 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC2C4.17c |||MS ion channel protein 2|Schizosaccharomyces pomb... 27 1.4
SPBC6B1.08c |ofd1||2-oxoglutarate and Fe|Schizosaccharomyces pom... 26 2.4
SPBC3B8.04c |||membrane transporter|Schizosaccharomyces pombe|ch... 26 2.4
SPAC1B9.03c ||SPAC6B12.01|RNA-binding protein|Schizosaccharomyce... 26 3.2
SPBC26H8.04c |||DEP domain|Schizosaccharomyces pombe|chr 2|||Manual 25 4.3
SPAC24C9.09 |||mitochondrial threonine-tRNA ligase|Schizosacchar... 25 5.6
SPAC3G9.05 |||GTPase activating protein |Schizosaccharomyces pom... 25 5.6
SPCC16C4.05 |||RNase P and RNase MRP subunit |Schizosaccharomyce... 25 5.6
SPBC211.03c |||guanyl-nucleotide exchange factor|Schizosaccharom... 25 7.4
SPCC1494.02c |taf13||transcription factor TFIID complex subunit ... 24 9.8
>SPAC2C4.17c |||MS ion channel protein 2|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 840
Score = 27.1 bits (57), Expect = 1.4
Identities = 9/25 (36%), Positives = 18/25 (72%)
Frame = +3
Query: 159 LVLLSWKWFSNSSFITSFLIVLFTL 233
+++ ++WF+N SFIT ++ + F L
Sbjct: 52 VIVKFYRWFNNLSFITRWITIWFPL 76
>SPBC6B1.08c |ofd1||2-oxoglutarate and Fe|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 515
Score = 26.2 bits (55), Expect = 2.4
Identities = 14/45 (31%), Positives = 23/45 (51%), Gaps = 1/45 (2%)
Frame = -2
Query: 286 MARNIKDNNNIDPATLLSNVKSTIKKDVIKELLEN-HFQESKTKI 155
++R N + + + T+ ++V KEL+EN HF E T I
Sbjct: 26 LSREYHKNGPYNHVVIRPLINDTLLRNVRKELMENIHFTEKVTDI 70
>SPBC3B8.04c |||membrane transporter|Schizosaccharomyces pombe|chr
2|||Manual
Length = 867
Score = 26.2 bits (55), Expect = 2.4
Identities = 13/35 (37%), Positives = 22/35 (62%), Gaps = 2/35 (5%)
Frame = +3
Query: 147 CGAILVLLSWKWFSNSS--FITSFLIVLFTLDNKV 245
C A+LV++S W + + F+TSFL+ T+ K+
Sbjct: 434 CLALLVMVSLLWATEAIPLFVTSFLVPFMTVFLKI 468
>SPAC1B9.03c ||SPAC6B12.01|RNA-binding protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 389
Score = 25.8 bits (54), Expect = 3.2
Identities = 15/43 (34%), Positives = 22/43 (51%), Gaps = 1/43 (2%)
Frame = -2
Query: 259 NIDPATLLSNVKSTIKKDVIKELLE-NHFQESKTKIAPHALML 134
N D L N KS + + LL NHF ++ +K +PH +L
Sbjct: 117 NKDVRRLQKNPKSPTTEFLTPPLLVMNHFNQNSSKDSPHEALL 159
>SPBC26H8.04c |||DEP domain|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1496
Score = 25.4 bits (53), Expect = 4.3
Identities = 9/19 (47%), Positives = 14/19 (73%)
Frame = -1
Query: 200 KGTIRKPLPRK*NQDCPTC 144
K TI++P+P K N+D +C
Sbjct: 698 KSTIQRPIPIKNNEDSDSC 716
>SPAC24C9.09 |||mitochondrial threonine-tRNA
ligase|Schizosaccharomyces pombe|chr 1|||Manual
Length = 473
Score = 25.0 bits (52), Expect = 5.6
Identities = 10/23 (43%), Positives = 13/23 (56%)
Frame = -3
Query: 123 WPNVWSPRHACVQSNKHRERVLT 55
WP SPRHA + +R+LT
Sbjct: 352 WPFWLSPRHAVILPVNQTDRILT 374
>SPAC3G9.05 |||GTPase activating protein |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 659
Score = 25.0 bits (52), Expect = 5.6
Identities = 10/39 (25%), Positives = 22/39 (56%)
Frame = -2
Query: 268 DNNNIDPATLLSNVKSTIKKDVIKELLENHFQESKTKIA 152
DNN++ P T L+ + KD+++ + + F +T+ +
Sbjct: 619 DNNSVPPLTDLAFSAAKCFKDILRAIEDAEFSVQRTQFS 657
>SPCC16C4.05 |||RNase P and RNase MRP subunit |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 201
Score = 25.0 bits (52), Expect = 5.6
Identities = 14/41 (34%), Positives = 20/41 (48%)
Frame = -2
Query: 226 KSTIKKDVIKELLENHFQESKTKIAPHALMLLADVAKCLVT 104
K T+ + + ELLE Q +K P + +L D LVT
Sbjct: 54 KLTVGLNSVNELLERCCQNAKDVTQPAVVFILHDQDSMLVT 94
>SPBC211.03c |||guanyl-nucleotide exchange factor|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1462
Score = 24.6 bits (51), Expect = 7.4
Identities = 10/29 (34%), Positives = 16/29 (55%)
Frame = -2
Query: 277 NIKDNNNIDPATLLSNVKSTIKKDVIKEL 191
N D+N + LSN++S I D++ L
Sbjct: 1020 NTVDDNKVSSVEALSNIQSAIVADLLTSL 1048
>SPCC1494.02c |taf13||transcription factor TFIID complex subunit
Taf13|Schizosaccharomyces pombe|chr 3|||Manual
Length = 132
Score = 24.2 bits (50), Expect = 9.8
Identities = 11/36 (30%), Positives = 18/36 (50%)
Frame = -2
Query: 154 APHALMLLADVAKCLVTETCLRAVKQAQREGXNKVD 47
AP ++ +L ++ + E CL A + A KVD
Sbjct: 36 APDSINVLEEIVVDYINEMCLEAARIAGNRNKVKVD 71
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,687,576
Number of Sequences: 5004
Number of extensions: 29563
Number of successful extensions: 99
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 97
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 99
length of database: 2,362,478
effective HSP length: 67
effective length of database: 2,027,210
effective search space used: 174340060
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -