Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P06_pT_E07
(461 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
01_06_0319 - 28441082-28441102,28441630-28441701,28442568-284426... 30 0.79
05_02_0037 + 5883285-5884292 29 2.4
02_05_0372 + 28370589-28371857 28 4.2
12_01_0814 - 7483597-7483818,7484136-7484276,7484370-7484444,748... 27 5.6
01_01_0873 + 6836746-6836775,6836859-6836918,6837729-6837899,683... 27 5.6
08_02_0404 - 16788315-16788725,16788833-16789528 27 9.7
07_01_1074 - 9599465-9599545,9599632-9599690,9600070-9600143,960... 27 9.7
07_01_0163 + 1149466-1150593,1150733-1150937,1151453-1151485,115... 27 9.7
05_07_0028 + 27153663-27153932,27154966-27155175,27156220-271564... 27 9.7
>01_06_0319 -
28441082-28441102,28441630-28441701,28442568-28442627,
28442918-28443105,28444300-28444327,28444880-28444907,
28444942-28445163,28445238-28445409,28446224-28447468,
28447573-28447741,28447820-28448045,28449096-28449451,
28449530-28449724,28450655-28450864,28451729-28452004
Length = 1155
Score = 30.3 bits (65), Expect = 0.79
Identities = 16/49 (32%), Positives = 25/49 (51%), Gaps = 2/49 (4%)
Frame = -2
Query: 208 DVIKELLENHFQESKTKIAPHALMLLA--DVAKCLVTETCLRAVKQAQR 68
D I E +E HF + +TK+ P A ML + + L C+ +K +R
Sbjct: 405 DQIMETIEKHFCDEETKVLPQARMLFSPEKQRQLLYKSLCVMPLKLLER 453
>05_02_0037 + 5883285-5884292
Length = 335
Score = 28.7 bits (61), Expect = 2.4
Identities = 9/16 (56%), Positives = 10/16 (62%)
Frame = -3
Query: 138 CCWQMWPNVWSPRHAC 91
CCW P+VW PR C
Sbjct: 304 CCWPSPPSVWWPRCGC 319
>02_05_0372 + 28370589-28371857
Length = 422
Score = 27.9 bits (59), Expect = 4.2
Identities = 14/31 (45%), Positives = 20/31 (64%)
Frame = -2
Query: 208 DVIKELLENHFQESKTKIAPHALMLLADVAK 116
DVIK LLE E+ T+++ AL +L DV +
Sbjct: 242 DVIKSLLELLSDEASTRLSSRALDVLLDVVE 272
>12_01_0814 -
7483597-7483818,7484136-7484276,7484370-7484444,
7484706-7484882,7485530-7485685,7485781-7485864,
7486589-7486661,7487744-7487946,7488046-7488124,
7488326-7488464,7488559-7488646
Length = 478
Score = 27.5 bits (58), Expect = 5.6
Identities = 19/60 (31%), Positives = 31/60 (51%)
Frame = -2
Query: 274 IKDNNNIDPATLLSNVKSTIKKDVIKELLENHFQESKTKIAPHALMLLADVAKCLVTETC 95
I + N++ P L ++VK+ ++K V + E+ + TK P L L+A A C E C
Sbjct: 179 INNQNHLVPV-LATSVKNEMQKLVAENGSESS-ESKNTKHHPLLLQLIAKEANCKPDEIC 236
>01_01_0873 +
6836746-6836775,6836859-6836918,6837729-6837899,
6838308-6838407,6838619-6838710,6838825-6839013
Length = 213
Score = 27.5 bits (58), Expect = 5.6
Identities = 11/38 (28%), Positives = 21/38 (55%)
Frame = -2
Query: 208 DVIKELLENHFQESKTKIAPHALMLLADVAKCLVTETC 95
D+++ +E + S K+ P+A ++ VA+ L TC
Sbjct: 39 DLLRNWIEEYSDHSFPKLRPYAPLIAGSVARSLACITC 76
>08_02_0404 - 16788315-16788725,16788833-16789528
Length = 368
Score = 26.6 bits (56), Expect = 9.7
Identities = 10/36 (27%), Positives = 23/36 (63%)
Frame = -2
Query: 454 IRPADEKSERIQYLHNFVLYLLDLLYPDTIIVTLIL 347
+RPA + +++Q H+F +L +L+ D++ V ++
Sbjct: 302 VRPAKKAKKKVQLDHSFCSHLGNLISCDSLFVGFVM 337
>07_01_1074 -
9599465-9599545,9599632-9599690,9600070-9600143,
9600797-9600996,9601074-9601365,9601665-9602411,
9602653-9602696,9602714-9602827,9603590-9603838,
9603922-9603927
Length = 621
Score = 26.6 bits (56), Expect = 9.7
Identities = 11/30 (36%), Positives = 18/30 (60%)
Frame = -2
Query: 250 PATLLSNVKSTIKKDVIKELLENHFQESKT 161
P +SN + TI+K ++E + F+ SKT
Sbjct: 249 PLVPISNFRRTIRKKKLQEFSKEEFETSKT 278
>07_01_0163 +
1149466-1150593,1150733-1150937,1151453-1151485,
1152244-1153646
Length = 922
Score = 26.6 bits (56), Expect = 9.7
Identities = 10/20 (50%), Positives = 15/20 (75%)
Frame = +3
Query: 90 RRHVSVTRHLATSANNIXAC 149
+RHVS TRH TS+++ +C
Sbjct: 794 QRHVSATRHKRTSSSSSYSC 813
>05_07_0028 +
27153663-27153932,27154966-27155175,27156220-27156414,
27156491-27156840,27157198-27157423,27157524-27157692,
27158145-27158990,27159647-27159818,27159934-27160052,
27160117-27160155,27161033-27161157,27161250-27161309,
27161471-27161542,27161980-27162114
Length = 995
Score = 26.6 bits (56), Expect = 9.7
Identities = 10/22 (45%), Positives = 14/22 (63%)
Frame = -2
Query: 208 DVIKELLENHFQESKTKIAPHA 143
D I E +E HF+ +TK+ P A
Sbjct: 401 DQIMEKIERHFKNEETKVLPQA 422
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,261,993
Number of Sequences: 37544
Number of extensions: 169120
Number of successful extensions: 410
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 400
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 410
length of database: 14,793,348
effective HSP length: 76
effective length of database: 11,940,004
effective search space used: 919380308
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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