Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P06_pT_E06
         (720 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U42845-1|AAA83599.1|  196|Caenorhabditis elegans Ribosomal prote...   278   3e-75
U64844-3|AAB18306.1|  196|Caenorhabditis elegans Ribosomal prote...   276   1e-74
AL161712-18|CAC70140.1|  448|Caenorhabditis elegans Hypothetical...    30   1.4  
U88176-4|ABB51191.1|  427|Caenorhabditis elegans Hypothetical pr...    30   1.9  
U41541-3|AAK18894.1| 7829|Caenorhabditis elegans Hypothetical pr...    29   3.3  
AF016685-7|AAG24151.1|  341|Caenorhabditis elegans Seven tm rece...    29   3.3  
U39850-7|AAM45370.1|  573|Caenorhabditis elegans Polyq (poly glu...    28   7.7  
U29488-1|AAA68773.2|  338|Caenorhabditis elegans Serpentine rece...    28   7.7  

>U42845-1|AAA83599.1|  196|Caenorhabditis elegans Ribosomal protein,
           large subunitprotein 11.2 protein.
          Length = 196

 Score =  278 bits (681), Expect = 3e-75
 Identities = 128/162 (79%), Positives = 146/162 (90%)
 Frame = -1

Query: 510 SKNVMRNLHIRKLCLNICVGESGDRLTRAAKVLEQLTGQQPVFSKARYTVRSFGIRRNEK 331
           ++NVMR L I+KLCLNICVGESGDRLTRAAKVLEQLTGQ PVFSKARYTVR+FGIRRNEK
Sbjct: 15  ARNVMRELKIQKLCLNICVGESGDRLTRAAKVLEQLTGQTPVFSKARYTVRTFGIRRNEK 74

Query: 330 IAVHCTVRGAKAEEILERGLKVREYELRRDNFSATGNFGFGIQEHIDLGIKYDPSIGIYG 151
           IAVHCTVRG KAEEILE+GLKV+EYEL ++NFS TGNFGFG+QEHIDLGIKYDPSIGIYG
Sbjct: 75  IAVHCTVRGPKAEEILEKGLKVKEYELYKENFSDTGNFGFGVQEHIDLGIKYDPSIGIYG 134

Query: 150 LDFYVVLGRPGFNVAHRRRKTGKVGFPHRLTKEDAMKWFQQE 25
           +DFYVVL R G  +A RRR  G+VG  HR+ +E+++KWFQQ+
Sbjct: 135 MDFYVVLDRAGRRIAKRRRAPGRVGPSHRVEREESIKWFQQK 176


>U64844-3|AAB18306.1|  196|Caenorhabditis elegans Ribosomal protein,
           large subunitprotein 11.1 protein.
          Length = 196

 Score =  276 bits (676), Expect = 1e-74
 Identities = 127/161 (78%), Positives = 143/161 (88%)
 Frame = -1

Query: 507 KNVMRNLHIRKLCLNICVGESGDRLTRAAKVLEQLTGQQPVFSKARYTVRSFGIRRNEKI 328
           +NVMR L I+KLCLNICVGESGDRLTRAAKVLEQLTGQ PVFSKARYTVR+FGIRRNEKI
Sbjct: 16  RNVMRELKIQKLCLNICVGESGDRLTRAAKVLEQLTGQTPVFSKARYTVRTFGIRRNEKI 75

Query: 327 AVHCTVRGAKAEEILERGLKVREYELRRDNFSATGNFGFGIQEHIDLGIKYDPSIGIYGL 148
           AVHCTVRG KAEEILE+GLKV+EYEL ++NFS TGNFGFG+QEHIDLGIKYDP IGIYG+
Sbjct: 76  AVHCTVRGPKAEEILEKGLKVKEYELFKENFSDTGNFGFGVQEHIDLGIKYDPGIGIYGM 135

Query: 147 DFYVVLGRPGFNVAHRRRKTGKVGFPHRLTKEDAMKWFQQE 25
           DFYVVL R G  V+ RRR  G++G  HR+ KE+ +KWFQQ+
Sbjct: 136 DFYVVLNRNGVRVSKRRRAPGRIGPSHRVDKEETIKWFQQK 176


>AL161712-18|CAC70140.1|  448|Caenorhabditis elegans Hypothetical
           protein Y66D12A.23 protein.
          Length = 448

 Score = 30.3 bits (65), Expect = 1.4
 Identities = 17/54 (31%), Positives = 27/54 (50%), Gaps = 1/54 (1%)
 Frame = -1

Query: 315 TVRGAKAEEILERGLKVREY-ELRRDNFSATGNFGFGIQEHIDLGIKYDPSIGI 157
           ++R   AEE+  RG  +  Y E+RR     TG FG G +  +   I +  S+ +
Sbjct: 353 SLREQSAEELQRRGCGIDWYLEMRRRGQPPTGGFGIGFERMLQYLIFFRKSLNL 406


>U88176-4|ABB51191.1|  427|Caenorhabditis elegans Hypothetical
           protein F18F11.3 protein.
          Length = 427

 Score = 29.9 bits (64), Expect = 1.9
 Identities = 15/41 (36%), Positives = 21/41 (51%)
 Frame = -1

Query: 174 DPSIGIYGLDFYVVLGRPGFNVAHRRRKTGKVGFPHRLTKE 52
           DP  GI G+  + V G   F +A R+  +GK     RL K+
Sbjct: 160 DPDTGISGISRFSVEGDSSFTLAKRKCSSGKCSTQLRLAKK 200


>U41541-3|AAK18894.1| 7829|Caenorhabditis elegans Hypothetical protein
            C41A3.1 protein.
          Length = 7829

 Score = 29.1 bits (62), Expect = 3.3
 Identities = 14/46 (30%), Positives = 25/46 (54%)
 Frame = +1

Query: 214  AKITRGGEVVTPQFIFSDFQTPLKDFFCFSSSDCTMDSNLFITTDT 351
            AK+ + G ++ PQ  FS+F+  +  FF  +    T+  N  I+ D+
Sbjct: 5666 AKMLQTG-IIPPQVNFSEFRDGMGQFFTVNGKKSTISQNSLISIDS 5710


>AF016685-7|AAG24151.1|  341|Caenorhabditis elegans Seven tm
           receptor protein 86 protein.
          Length = 341

 Score = 29.1 bits (62), Expect = 3.3
 Identities = 13/31 (41%), Positives = 18/31 (58%), Gaps = 1/31 (3%)
 Frame = +1

Query: 253 FIFSDFQTPLKDFF-CFSSSDCTMDSNLFIT 342
           ++  DF+  +KDFF C   SD T  S +F T
Sbjct: 300 YVIKDFRIGVKDFFKCGKKSDNTSSSTIFTT 330


>U39850-7|AAM45370.1|  573|Caenorhabditis elegans Polyq (poly
           glutamine tract) toxicityenhancer protein 1, isoform e
           protein.
          Length = 573

 Score = 27.9 bits (59), Expect = 7.7
 Identities = 14/52 (26%), Positives = 24/52 (46%)
 Frame = +3

Query: 495 ALHF*NYPSEPSSPFYLSSTQAVVHAP*LQLFKKKSIGRPNSFKFPIVSRIK 650
           A HF  +   P+S   + S    VH P  ++    S+  P+  K P++  +K
Sbjct: 10  ASHFNQFQKRPTSSASVDSNDDGVHIPAKRMAHASSVPGPSRSKPPMIGAVK 61


>U29488-1|AAA68773.2|  338|Caenorhabditis elegans Serpentine
           receptor, class a (alpha)protein 31 protein.
          Length = 338

 Score = 27.9 bits (59), Expect = 7.7
 Identities = 15/34 (44%), Positives = 20/34 (58%)
 Frame = +1

Query: 298 FSSSDCTMDSNLFITTDTKRPHCIPSLGKYRLLS 399
           F SS+C ++SNL+  T+     C  SL   RLLS
Sbjct: 97  FQSSECLIESNLYYYTNLFSSLCCISLFFDRLLS 130


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,614,724
Number of Sequences: 27780
Number of extensions: 347974
Number of successful extensions: 849
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 819
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 849
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1687292480
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)