Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P06_pT_E05
(778 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC106.15 |idi1||isopentenyl-diphosphate delta-isomerase Idi1|S... 169 5e-43
SPCC965.14c |||cytosine deaminase |Schizosaccharomyces pombe|chr... 29 0.98
SPBC4.03c |||COPII-coated vesicle component Sfb3 |Schizosaccharo... 29 0.98
SPBC30B4.01c |wsc1|SPBC3D6.14c|transmembrane receptor Wsc1 |Schi... 28 1.3
SPBC336.12c |cdc10||MBF transcription factor complex subunit Cdc... 28 1.7
SPBC2G2.01c |liz1|SPBC4B4.13c|pantothenate transporter |Schizosa... 27 4.0
SPAC22E12.09c |krp1|krp|kexin|Schizosaccharomyces pombe|chr 1|||... 26 5.2
SPBC3E7.06c |||membrane transporter|Schizosaccharomyces pombe|ch... 26 5.2
>SPBC106.15 |idi1||isopentenyl-diphosphate delta-isomerase
Idi1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 227
Score = 169 bits (410), Expect = 5e-43
Identities = 77/197 (39%), Positives = 118/197 (59%), Gaps = 8/197 (4%)
Frame = -3
Query: 665 LDKDICLLVDEKDNFIGTATKRECHKVGPDGDVLLHRAFSVFLFNKRGDMFLQRRSSQKV 486
L +++C++VDE D + TK+ECH + LLHRAFS+F+F+++ + LQ+R+ +K+
Sbjct: 17 LMEEVCIVVDENDVPLRYGTKKECHLMENINKGLLHRAFSMFIFDEQNRLLLQQRAEEKI 76
Query: 485 TYPDYYTNACCSHPLYI--------DEKPEEIITAARRRMNHELGIPLDQLDPELFTFMT 330
T+P +TN CCSHPL + E E + AA+R++ HELGI + + F F+T
Sbjct: 77 TFPSLWTNTCCSHPLDVAGERGNTLPEAVEGVKNAAQRKLFHELGIQAKYIPKDKFQFLT 136
Query: 329 RVHYHDPGDGVWGEHEIDHILFFQSDVKVKPNSDEISEYCFVPKAEFNSFLPTLEGPITP 150
R+HY P G WGEHEID+ILFF+ V++ N +E+ Y +V E + TP
Sbjct: 137 RIHYLAPSTGAWGEHEIDYILFFKGKVELDINPNEVQAYKYVTMEELKEMFSDPQYGFTP 196
Query: 149 WFNMIRRHRLKLWWDNL 99
WF +I H + WW ++
Sbjct: 197 WFKLICEHFMFKWWQDV 213
>SPCC965.14c |||cytosine deaminase |Schizosaccharomyces pombe|chr
3|||Manual
Length = 162
Score = 28.7 bits (61), Expect = 0.98
Identities = 15/31 (48%), Positives = 18/31 (58%)
Frame = -3
Query: 650 CLLVDEKDNFIGTATKRECHKVGPDGDVLLH 558
C++VDE DN I +A R PDGDV H
Sbjct: 34 CIIVDENDNVIMSAGNRV-----PDGDVTQH 59
>SPBC4.03c |||COPII-coated vesicle component Sfb3
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 891
Score = 28.7 bits (61), Expect = 0.98
Identities = 25/95 (26%), Positives = 39/95 (41%), Gaps = 2/95 (2%)
Frame = -3
Query: 437 IDEKPEEIITAARRRMNHELGIPLDQLDPELFTFMTRVHYHDPGDGV--WGEHEIDHILF 264
++ +PE + ++ + I D P F FM V Y G+ I +IL+
Sbjct: 263 VESRPELNVGTIDFKVGKDYWIKEDPPKPARFVFMIDVSYEASSKGLPKVAAEAIRNILY 322
Query: 263 FQSDVKVKPNSDEISEYCFVPKAEFNSFLPTLEGP 159
V + PN +I+ CF F + P LE P
Sbjct: 323 --GPVPLDPNV-KIAIVCFDRSVNFFNLSPNLEQP 354
>SPBC30B4.01c |wsc1|SPBC3D6.14c|transmembrane receptor Wsc1
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 374
Score = 28.3 bits (60), Expect = 1.3
Identities = 23/69 (33%), Positives = 35/69 (50%)
Frame = +1
Query: 562 SSTSPSGPTL*HSLFVAVPMKLSFSSTSRQISLSKASAWANSRPSLSRVAGFTGSEAKNL 741
SS+S S + S +VP+ S SS+ S S +S+ ++SRPS S + T +
Sbjct: 191 SSSSSSSSSSSSSSSSSVPITSSTSSSHSSSSSSSSSSSSSSRPS-SSSSFITTMSSSTF 249
Query: 742 FSTLXVLHS 768
ST+ V S
Sbjct: 250 ISTVTVTPS 258
>SPBC336.12c |cdc10||MBF transcription factor complex subunit
Cdc10|Schizosaccharomyces pombe|chr 2|||Manual
Length = 767
Score = 27.9 bits (59), Expect = 1.7
Identities = 19/59 (32%), Positives = 28/59 (47%)
Frame = +1
Query: 82 SSLMRCKLSHQSFNRWRRIMLNHGVIGPSKVGRNELNSALGTKQYSEISSEFGLTLTSL 258
SS + L+ SFN R + NH PSK +N +++ + SS F L LT +
Sbjct: 180 SSSISKNLNTSSFNT-RSPLRNHNFSNPSKSSKNGVHTINNMQSSPSPSSSFLLPLTQI 237
>SPBC2G2.01c |liz1|SPBC4B4.13c|pantothenate transporter
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 514
Score = 26.6 bits (56), Expect = 4.0
Identities = 20/64 (31%), Positives = 27/64 (42%)
Frame = +1
Query: 61 CIFSGSASSLMRCKLSHQSFNRWRRIMLNHGVIGPSKVGRNELNSALGTKQYSEISSEFG 240
CI S R K S Q + + H + K+G+N+ S T EISS G
Sbjct: 438 CIVSYMQIRDKRIKRSIQDAKDFDDVFTEHESLELKKIGKNDEESLNTTNAVKEISSP-G 496
Query: 241 LTLT 252
L +T
Sbjct: 497 LVIT 500
>SPAC22E12.09c |krp1|krp|kexin|Schizosaccharomyces pombe|chr
1|||Manual
Length = 709
Score = 26.2 bits (55), Expect = 5.2
Identities = 9/17 (52%), Positives = 13/17 (76%)
Frame = -3
Query: 344 FTFMTRVHYHDPGDGVW 294
+TFMT H+ +P +GVW
Sbjct: 543 WTFMTVQHWAEPPEGVW 559
>SPBC3E7.06c |||membrane transporter|Schizosaccharomyces pombe|chr
2|||Manual
Length = 577
Score = 26.2 bits (55), Expect = 5.2
Identities = 11/39 (28%), Positives = 20/39 (51%)
Frame = +1
Query: 187 LNSALGTKQYSEISSEFGLTLTSLWKNSMWSISCSPHTP 303
L++ + Y++I +EFG W + + ISC+ P
Sbjct: 104 LDNTIVASTYTKIGAEFGKFSQVSWTATAYMISCTAFQP 142
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,395,720
Number of Sequences: 5004
Number of extensions: 74378
Number of successful extensions: 230
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 223
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 229
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 375345278
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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