Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P06_pT_E02
         (795 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC777.07 |||alpha-1,2-mannosyltransferase |Schizosaccharomyces...    27   3.1  
SPAC12G12.16c ||SPAC18B11.01c|nuclease, XP-G family|Schizosaccha...    27   4.1  
SPAC23H4.14 |vam6|vps39|guanyl-nucleotide exchange factor Vma6|S...    26   7.1  
SPCC594.07c |||sequence orphan|Schizosaccharomyces pombe|chr 3||...    25   9.4  

>SPCC777.07 |||alpha-1,2-mannosyltransferase |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 378

 Score = 27.1 bits (57), Expect = 3.1
 Identities = 14/33 (42%), Positives = 18/33 (54%), Gaps = 4/33 (12%)
 Frame = -2

Query: 752 AHLSHIYRLFYENW----LHSWYKSLYLLQSSV 666
           AHL   Y  FYE W    +HS   SL+L +S +
Sbjct: 293 AHLDKNYGFFYERWGDAPVHSLAASLFLNKSQI 325


>SPAC12G12.16c ||SPAC18B11.01c|nuclease, XP-G
           family|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 496

 Score = 26.6 bits (56), Expect = 4.1
 Identities = 11/30 (36%), Positives = 17/30 (56%)
 Frame = +2

Query: 620 NDLPGLDRSYVNFLQSHLTVISTVICTKSV 709
           ND P   RSY+ F+ S+L +    +C K +
Sbjct: 214 NDFPSEIRSYLEFILSNLDLECLTLCLKII 243


>SPAC23H4.14 |vam6|vps39|guanyl-nucleotide exchange factor
           Vma6|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 905

 Score = 25.8 bits (54), Expect = 7.1
 Identities = 10/46 (21%), Positives = 22/46 (47%)
 Frame = -2

Query: 722 YENWLHSWYKSLYLLQSSVTVEN*RKTYPTPASRF*TSNNVLYSFT 585
           +  +++ W K  Y +   + + N   T+    + F TSN+ ++  T
Sbjct: 260 HNQYIYIWNKETYAMIQQIGISNIYSTFSCHKNTFFTSNSYVWILT 305


>SPCC594.07c |||sequence orphan|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 255

 Score = 25.4 bits (53), Expect = 9.4
 Identities = 11/32 (34%), Positives = 17/32 (53%)
 Frame = +1

Query: 307 DVSWL*IKNCFYRYNCVKCLFEIKTIYILIFI 402
           D   L +  CF R N +KC  ++ T Y + F+
Sbjct: 106 DAISLLVARCFSRANPIKCSNQVNTQYSVSFL 137


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,860,329
Number of Sequences: 5004
Number of extensions: 53553
Number of successful extensions: 101
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 98
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 101
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 387388442
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)