Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P06_pT_D24
(390 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
01_06_0431 + 29308635-29308782,29308882-29309048,29309747-29309869 74 5e-14
02_05_1254 - 35275050-35275178,35275701-35275867,35275969-35276116 73 1e-13
05_06_0252 - 26695467-26695595,26697233-26697399,26697503-26697650 72 2e-13
11_01_0298 - 2231063-2232015,2232124-2232798,2232918-2232946,223... 27 4.0
05_04_0210 + 19082778-19082940,19083806-19083875,19084172-190842... 27 5.3
03_05_0394 + 23758392-23758625,23759097-23759273,23759349-237594... 27 5.3
06_03_1314 + 29266320-29266346,29266463-29266556,29266663-292667... 27 7.0
05_05_0075 + 22209322-22210041,22210323-22210391,22210775-222111... 27 7.0
04_04_1002 - 30025914-30026021,30026116-30026297,30026626-300269... 27 7.0
01_01_1190 + 9463973-9465732,9466210-9466440,9467664-9467793,946... 27 7.0
05_01_0564 - 4919294-4919391,4919491-4919620,4919700-4919789,491... 26 9.2
04_04_0330 + 24456200-24456261,24456385-24456520,24457100-244571... 26 9.2
01_02_0022 + 10290033-10290407,10290497-10290848,10290923-102910... 26 9.2
>01_06_0431 + 29308635-29308782,29308882-29309048,29309747-29309869
Length = 145
Score = 73.7 bits (173), Expect = 5e-14
Identities = 46/115 (40%), Positives = 63/115 (54%), Gaps = 5/115 (4%)
Frame = -2
Query: 374 NNAFLVKK---RNIKKPFSKEPNNVTNLHSFRYNGLIHKKAVGVVENPDRKGFTVVYKKA 204
NN+FLVK+ N K FSKEPNN+ N+HS++++GL +KK V V+ K VV
Sbjct: 16 NNSFLVKQFGNGNAKVQFSKEPNNLYNVHSYKHSGLANKKTV-TVQPASGKETAVVLSTT 74
Query: 203 KATR--KPAKNLIRRPFKAGARRSLYKVKRLLKANHYRTDLCKATLRRASAILRS 45
K + KPA + + R+ VK + N+YR DL K L R SA+ RS
Sbjct: 75 KTEKQNKPASLYHKSVMRKEFRKMAKAVKNQVSDNYYRPDLTKPALARLSAVYRS 129
>02_05_1254 - 35275050-35275178,35275701-35275867,35275969-35276116
Length = 147
Score = 72.5 bits (170), Expect = 1e-13
Identities = 42/114 (36%), Positives = 62/114 (54%), Gaps = 4/114 (3%)
Frame = -2
Query: 374 NNAFLVKK---RNIKKPFSKEPNNVTNLHSFRYNGLIHKKAVGVVENPDRKGFTVV-YKK 207
NN FLVK+ N K F+KEPNN+ N+HS++++GL +KK V + + + V+ K
Sbjct: 16 NNCFLVKQFGNSNAKVQFTKEPNNLYNVHSYKHSGLANKKTVTIQPSGGKDAAVVLSTTK 75
Query: 206 AKATRKPAKNLIRRPFKAGARRSLYKVKRLLKANHYRTDLCKATLRRASAILRS 45
K PAK + + R+ VK + N+YR DL K L R S++ RS
Sbjct: 76 TKKQNAPAKLYHKSVMRKEFRKMAKAVKNQVSDNYYRPDLTKPALARLSSVYRS 129
>05_06_0252 - 26695467-26695595,26697233-26697399,26697503-26697650
Length = 147
Score = 71.7 bits (168), Expect = 2e-13
Identities = 42/114 (36%), Positives = 62/114 (54%), Gaps = 4/114 (3%)
Frame = -2
Query: 374 NNAFLVKK---RNIKKPFSKEPNNVTNLHSFRYNGLIHKKAVGVVENPDRKGFTVV-YKK 207
NN FLVK+ N K F+KEPNN+ N+HS++++GL +KK V + + + V+ K
Sbjct: 16 NNCFLVKQFGNSNAKVQFTKEPNNLYNVHSYKHSGLANKKTVTIQPSGVKDAAVVLSTTK 75
Query: 206 AKATRKPAKNLIRRPFKAGARRSLYKVKRLLKANHYRTDLCKATLRRASAILRS 45
K PAK + + R+ VK + N+YR DL K L R S++ RS
Sbjct: 76 TKKQNAPAKLYHKSVMRKEFRKMAKAVKNQVSDNYYRPDLTKPALARLSSVYRS 129
>11_01_0298 - 2231063-2232015,2232124-2232798,2232918-2232946,
2233053-2233513,2233593-2233717,2233801-2234098,
2235004-2236234,2236562-2237233,2237329-2238539
Length = 1884
Score = 27.5 bits (58), Expect = 4.0
Identities = 14/50 (28%), Positives = 21/50 (42%)
Frame = -2
Query: 377 NNNAFLVKKRNIKKPFSKEPNNVTNLHSFRYNGLIHKKAVGVVENPDRKG 228
N A + K KKP ++P +Y GL+ KK+ N + G
Sbjct: 1474 NAGAQVQPKTKSKKPKPEKPRKSKKTEEIKYFGLVWKKSTNDKNNNENSG 1523
>05_04_0210 +
19082778-19082940,19083806-19083875,19084172-19084295,
19084442-19084897
Length = 270
Score = 27.1 bits (57), Expect = 5.3
Identities = 11/25 (44%), Positives = 14/25 (56%)
Frame = +2
Query: 38 ASGSGGWLKHDEG*PCIGLCGSG*P 112
A GSGGW + +G CG+G P
Sbjct: 28 AEGSGGWRRRRDGHVARARCGAGEP 52
>03_05_0394 +
23758392-23758625,23759097-23759273,23759349-23759453,
23759640-23759681,23759763-23759960,23760037-23760165,
23760248-23760377,23761119-23761179,23761241-23761322,
23761402-23761653
Length = 469
Score = 27.1 bits (57), Expect = 5.3
Identities = 11/28 (39%), Positives = 18/28 (64%)
Frame = +3
Query: 300 EVSHIVRLLAERLFDIALLHKECIVVAN 383
+VSHI+ + E+ D+AL + EC + N
Sbjct: 361 KVSHIIVVACEKCLDLALKYVECCLKHN 388
>06_03_1314 +
29266320-29266346,29266463-29266556,29266663-29266712,
29266798-29266847,29266945-29267053,29267135-29267195,
29267291-29267343,29267629-29267721,29268091-29268166,
29268401-29268508,29268596-29268840
Length = 321
Score = 26.6 bits (56), Expect = 7.0
Identities = 22/82 (26%), Positives = 40/82 (48%), Gaps = 7/82 (8%)
Frame = +3
Query: 165 TAD*VFSGLSGSLCFLVHYCESLP-VRVLHDTNGFLVNQAVVPEGVEVSHIVRL---LAE 332
TA+ V G LV C+ P V LHD + F+ +Q ++ V+H++++
Sbjct: 107 TAEVVIRHFDGCKADLV-VCDGAPDVTGLHDMDEFVQSQLILAALTIVTHVLKVGGKFVA 165
Query: 333 RLF---DIALLHKECIVVANSF 389
++F D +LL+ +C + F
Sbjct: 166 KIFRGKDTSLLYCQCFMQLKLF 187
>05_05_0075 +
22209322-22210041,22210323-22210391,22210775-22211145,
22212291-22212351,22212496-22213086
Length = 603
Score = 26.6 bits (56), Expect = 7.0
Identities = 16/50 (32%), Positives = 25/50 (50%), Gaps = 2/50 (4%)
Frame = -2
Query: 371 NAFLVKKRNIKKPFSKEPNNVTNLHSFRYNGLI--HKKAVGVVENPDRKG 228
N + R+I+ S+ P++++ SF YNGL H A+ PD G
Sbjct: 478 NHSISASRHIEDGLSQMPHDISGQVSFAYNGLAAHHSIAMAHHHQPDLIG 527
>04_04_1002 -
30025914-30026021,30026116-30026297,30026626-30026908,
30026992-30027630
Length = 403
Score = 26.6 bits (56), Expect = 7.0
Identities = 13/37 (35%), Positives = 19/37 (51%)
Frame = -2
Query: 176 LIRRPFKAGARRSLYKVKRLLKANHYRTDLCKATLRR 66
L+ R + G LYK L A+++ T CKA L +
Sbjct: 51 LLGRQSQVGCLDELYKSVEDLSADYFHTKACKAMLMK 87
>01_01_1190 +
9463973-9465732,9466210-9466440,9467664-9467793,
9468723-9468888,9469528-9469859,9470284-9470513,
9471535-9471613,9471689-9471865
Length = 1034
Score = 26.6 bits (56), Expect = 7.0
Identities = 11/28 (39%), Positives = 15/28 (53%)
Frame = -3
Query: 85 ARLPFVVLQPSSAPRGPSKQKRLRQPQP 2
A PF + +S+PR P + RQP P
Sbjct: 10 ASAPFPTIPAASSPRNPRAARPRRQPAP 37
>05_01_0564 -
4919294-4919391,4919491-4919620,4919700-4919789,
4919882-4919987,4920087-4920187,4920347-4920442,
4920549-4920648,4920761-4920897,4920980-4921111,
4921222-4921320,4921397-4921594,4921715-4921892,
4922020-4922075,4922168-4922320,4922422-4922514,
4922605-4922706,4922817-4922878,4922995-4923090,
4923354-4923453,4923546-4923617,4923728-4923775,
4923853-4923996
Length = 796
Score = 26.2 bits (55), Expect = 9.2
Identities = 11/41 (26%), Positives = 23/41 (56%)
Frame = -1
Query: 231 GIHSSVQESKGYQKAR*KLNPPSIQGWCQEVTVQSEEVVKG 109
G++ E + ++K NP ++ W ++ +S+EV+KG
Sbjct: 703 GVNPLKVEIRLFEKLFLSENPVELEDWLGDLNPRSKEVIKG 743
>04_04_0330 +
24456200-24456261,24456385-24456520,24457100-24457165,
24457260-24457310,24457399-24457455,24457742-24457827,
24458207-24458216,24458385-24458450,24458744-24458784,
24460050-24460182,24460857-24461045,24461145-24461219,
24462228-24462358,24463155-24463229,24463385-24463562
Length = 451
Score = 26.2 bits (55), Expect = 9.2
Identities = 12/47 (25%), Positives = 25/47 (53%)
Frame = +1
Query: 223 VNPFLSGFSTTPTAFL*IKPLYLKEWRLVTLFGSLLNGFLILRFFTR 363
++PF++G S L I+ + W L +GS++ G ++ + T+
Sbjct: 162 IDPFVAGTSGGDPESLSIRHAFPALWNLENKYGSVIAGAILSKLSTK 208
>01_02_0022 +
10290033-10290407,10290497-10290848,10290923-10291070,
10291145-10291225,10291651-10291822,10292120-10292158,
10292384-10292543,10292676-10292779,10292979-10293278
Length = 576
Score = 26.2 bits (55), Expect = 9.2
Identities = 13/38 (34%), Positives = 19/38 (50%)
Frame = +1
Query: 223 VNPFLSGFSTTPTAFL*IKPLYLKEWRLVTLFGSLLNG 336
+ PF SG + L +K + K WRL GS++ G
Sbjct: 237 IEPFCSGVYAGDPSKLSMKAAFGKVWRLEDTGGSIIGG 274
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,801,568
Number of Sequences: 37544
Number of extensions: 229535
Number of successful extensions: 599
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 587
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 596
length of database: 14,793,348
effective HSP length: 74
effective length of database: 12,015,092
effective search space used: 660830060
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -