Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P06_pT_D24
         (390 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z75547-8|CAA99898.1|  126|Caenorhabditis elegans Hypothetical pr...    51   3e-07
U41007-13|AAA82271.2|  307|Caenorhabditis elegans (s. pombe chro...    29   1.5  
Z81497-8|CAC70080.1|  707|Caenorhabditis elegans Hypothetical pr...    27   3.6  
Z75953-7|CAB00101.2|  707|Caenorhabditis elegans Hypothetical pr...    27   3.6  
U00181-1|AAA18259.1|  707|Caenorhabditis elegans protein kinase ...    27   3.6  
AF039052-5|AAF98626.2|  586|Caenorhabditis elegans Hypothetical ...    27   3.6  

>Z75547-8|CAA99898.1|  126|Caenorhabditis elegans Hypothetical
           protein R11D1.8 protein.
          Length = 126

 Score = 51.2 bits (117), Expect = 3e-07
 Identities = 42/114 (36%), Positives = 60/114 (52%)
 Frame = -2

Query: 383 ICNNNAFLVKKRNIKKPFSKEPNNVTNLHSFRYNGLIHKKAVGVVENPDRKGFTVVYKKA 204
           I NN+AFL  +R I K FS E  N+  ++S +Y+GL +K A+ V  +   KG  V  K  
Sbjct: 10  IRNNSAFLRTQRGIGKRFSTEKFNLKKVNSPKYSGLANKHAIDV--SAAAKGVVVSTKNE 67

Query: 203 KATRKPAKNLIRRPFKAGARRSLYKVKRLLKANHYRTDLCKATLRRASAILRSQ 42
           K   +PAK +        ++  +  V+RL K N       K   RRA+AI+RSQ
Sbjct: 68  KG--RPAKAVTTSTL---SKTPVASVRRLAK-NAGFNKFNKLAQRRAAAIVRSQ 115


>U41007-13|AAA82271.2|  307|Caenorhabditis elegans (s. pombe
           chromosome segregationprotein) homolog protein 1
           protein.
          Length = 307

 Score = 28.7 bits (61), Expect = 1.5
 Identities = 14/34 (41%), Positives = 18/34 (52%)
 Frame = -3

Query: 103 TTAQTYARLPFVVLQPSSAPRGPSKQKRLRQPQP 2
           +T  T  R P ++  PSS P GPSK    + P P
Sbjct: 213 STIPTNRRAPMLIA-PSSTPAGPSKPTARKPPTP 245


>Z81497-8|CAC70080.1|  707|Caenorhabditis elegans Hypothetical
           protein F57F5.5 protein.
          Length = 707

 Score = 27.5 bits (58), Expect = 3.6
 Identities = 13/39 (33%), Positives = 20/39 (51%)
 Frame = -2

Query: 329 SKEPNNVTNLHSFRYNGLIHKKAVGVVENPDRKGFTVVY 213
           SK P    ++H F +  ++ K + G V   +RKG   VY
Sbjct: 366 SKVPGGTLSIHDFTFMKVLGKGSFGKVMLAERKGTDEVY 404


>Z75953-7|CAB00101.2|  707|Caenorhabditis elegans Hypothetical
           protein F57F5.5 protein.
          Length = 707

 Score = 27.5 bits (58), Expect = 3.6
 Identities = 13/39 (33%), Positives = 20/39 (51%)
 Frame = -2

Query: 329 SKEPNNVTNLHSFRYNGLIHKKAVGVVENPDRKGFTVVY 213
           SK P    ++H F +  ++ K + G V   +RKG   VY
Sbjct: 366 SKVPGGTLSIHDFTFMKVLGKGSFGKVMLAERKGTDEVY 404


>U00181-1|AAA18259.1|  707|Caenorhabditis elegans protein kinase C
           protein.
          Length = 707

 Score = 27.5 bits (58), Expect = 3.6
 Identities = 13/39 (33%), Positives = 20/39 (51%)
 Frame = -2

Query: 329 SKEPNNVTNLHSFRYNGLIHKKAVGVVENPDRKGFTVVY 213
           SK P    ++H F +  ++ K + G V   +RKG   VY
Sbjct: 366 SKVPGGTLSIHDFTFMKVLGKGSFGKVMLAERKGTDEVY 404


>AF039052-5|AAF98626.2|  586|Caenorhabditis elegans Hypothetical
           protein T22D1.4 protein.
          Length = 586

 Score = 27.5 bits (58), Expect = 3.6
 Identities = 16/46 (34%), Positives = 24/46 (52%)
 Frame = +3

Query: 225 ESLPVRVLHDTNGFLVNQAVVPEGVEVSHIVRLLAERLFDIALLHK 362
           E+ PV+V ++ N   V   +V   +EVSH   +  E    I L+HK
Sbjct: 192 ETKPVKVHYENNSPFVIATIVERFIEVSHWGNIAVEEY--IELVHK 235


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,818,997
Number of Sequences: 27780
Number of extensions: 180916
Number of successful extensions: 491
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 481
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 491
length of database: 12,740,198
effective HSP length: 74
effective length of database: 10,684,478
effective search space used: 587646290
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)