Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P06_pT_D24
         (390 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

L10433-1|AAA27732.1|  149|Apis mellifera transposase protein.          24   0.71 
M29490-1|AAA27725.1|  109|Apis mellifera protein ( Bee homeobox-...    22   2.2  
AB204558-1|BAD89803.1| 1143|Apis mellifera nitric oxide synthase...    22   2.9  
DQ325130-1|ABD14144.1|  174|Apis mellifera complementary sex det...    21   3.8  
DQ325129-1|ABD14143.1|  174|Apis mellifera complementary sex det...    21   3.8  
DQ325128-1|ABD14142.1|  174|Apis mellifera complementary sex det...    21   3.8  
DQ325127-1|ABD14141.1|  174|Apis mellifera complementary sex det...    21   3.8  
DQ325125-1|ABD14139.1|  174|Apis mellifera complementary sex det...    21   3.8  
AY217747-1|AAP45005.1|  246|Apis mellifera short-chain dehydroge...    21   3.8  
M29489-1|AAA27724.1|  109|Apis mellifera protein ( Bee homeobox-...    21   5.0  
AY155490-1|AAO12861.1|  342|Apis mellifera Ammar1 transposase pr...    21   5.0  
AB022907-1|BAA86908.1|  615|Apis mellifera glucose oxidase protein.    21   6.6  
EF625897-1|ABR45904.1|  684|Apis mellifera hexamerin protein.          20   8.7  
EF591128-1|ABQ59246.1|  684|Apis mellifera hexamerin 70a protein.      20   8.7  
DQ855485-1|ABH88172.1|  128|Apis mellifera chemosensory protein ...    20   8.7  
AJ973400-1|CAJ01447.1|  128|Apis mellifera hypothetical protein ...    20   8.7  

>L10433-1|AAA27732.1|  149|Apis mellifera transposase protein.
          Length = 149

 Score = 23.8 bits (49), Expect = 0.71
 Identities = 10/19 (52%), Positives = 12/19 (63%)
 Frame = -2

Query: 374 NNAFLVKKRNIKKPFSKEP 318
           N+  L+KKRN   PF K P
Sbjct: 10  NSCDLLKKRNENDPFLKRP 28


>M29490-1|AAA27725.1|  109|Apis mellifera protein ( Bee
           homeobox-containing gene,partial cds, clone E30. ).
          Length = 109

 Score = 22.2 bits (45), Expect = 2.2
 Identities = 12/43 (27%), Positives = 20/43 (46%)
 Frame = -2

Query: 170 RRPFKAGARRSLYKVKRLLKANHYRTDLCKATLRRASAILRSQ 42
           +RP  A +   L ++KR    N Y T+  +  L R   +  +Q
Sbjct: 21  KRPRTAFSAEQLARLKREFAENRYLTERRRQQLSRDLGLTEAQ 63


>AB204558-1|BAD89803.1| 1143|Apis mellifera nitric oxide synthase
           protein.
          Length = 1143

 Score = 21.8 bits (44), Expect = 2.9
 Identities = 8/32 (25%), Positives = 14/32 (43%)
 Frame = -2

Query: 383 ICNNNAFLVKKRNIKKPFSKEPNNVTNLHSFR 288
           +CN+  +   K NI+   +  P      H +R
Sbjct: 153 LCNHIKYSTNKGNIRSAITIFPQRTDGKHDYR 184


>DQ325130-1|ABD14144.1|  174|Apis mellifera complementary sex
           determiner protein.
          Length = 174

 Score = 21.4 bits (43), Expect = 3.8
 Identities = 7/15 (46%), Positives = 11/15 (73%)
 Frame = +3

Query: 201 LCFLVHYCESLPVRV 245
           LC+ ++Y E +PV V
Sbjct: 102 LCYNINYIEQIPVPV 116


>DQ325129-1|ABD14143.1|  174|Apis mellifera complementary sex
           determiner protein.
          Length = 174

 Score = 21.4 bits (43), Expect = 3.8
 Identities = 7/15 (46%), Positives = 11/15 (73%)
 Frame = +3

Query: 201 LCFLVHYCESLPVRV 245
           LC+ ++Y E +PV V
Sbjct: 102 LCYNINYIEQIPVPV 116


>DQ325128-1|ABD14142.1|  174|Apis mellifera complementary sex
           determiner protein.
          Length = 174

 Score = 21.4 bits (43), Expect = 3.8
 Identities = 7/15 (46%), Positives = 11/15 (73%)
 Frame = +3

Query: 201 LCFLVHYCESLPVRV 245
           LC+ ++Y E +PV V
Sbjct: 102 LCYNINYIEQIPVPV 116


>DQ325127-1|ABD14141.1|  174|Apis mellifera complementary sex
           determiner protein.
          Length = 174

 Score = 21.4 bits (43), Expect = 3.8
 Identities = 7/15 (46%), Positives = 11/15 (73%)
 Frame = +3

Query: 201 LCFLVHYCESLPVRV 245
           LC+ ++Y E +PV V
Sbjct: 102 LCYNINYIEQIPVPV 116


>DQ325125-1|ABD14139.1|  174|Apis mellifera complementary sex
           determiner protein.
          Length = 174

 Score = 21.4 bits (43), Expect = 3.8
 Identities = 7/15 (46%), Positives = 11/15 (73%)
 Frame = +3

Query: 201 LCFLVHYCESLPVRV 245
           LC+ ++Y E +PV V
Sbjct: 102 LCYNINYIEQIPVPV 116


>AY217747-1|AAP45005.1|  246|Apis mellifera short-chain
           dehydrogenase/reductase protein.
          Length = 246

 Score = 21.4 bits (43), Expect = 3.8
 Identities = 11/36 (30%), Positives = 20/36 (55%)
 Frame = +3

Query: 267 LVNQAVVPEGVEVSHIVRLLAERLFDIALLHKECIV 374
           L+N A +   V + +   L  +++FDI LL   C++
Sbjct: 88  LINNATINIDVTLQNDEVLDWKKIFDINLLGLTCMI 123


>M29489-1|AAA27724.1|  109|Apis mellifera protein ( Bee
           homeobox-containing gene,partial cds, clone E60. ).
          Length = 109

 Score = 21.0 bits (42), Expect = 5.0
 Identities = 12/43 (27%), Positives = 20/43 (46%)
 Frame = -2

Query: 170 RRPFKAGARRSLYKVKRLLKANHYRTDLCKATLRRASAILRSQ 42
           +RP  A +   L ++KR    N Y T+  +  L R   +  +Q
Sbjct: 21  KRPRTAFSGEQLARLKREFAENRYLTERRRQQLSRDLGLNEAQ 63


>AY155490-1|AAO12861.1|  342|Apis mellifera Ammar1 transposase
           protein.
          Length = 342

 Score = 21.0 bits (42), Expect = 5.0
 Identities = 9/17 (52%), Positives = 11/17 (64%)
 Frame = -2

Query: 374 NNAFLVKKRNIKKPFSK 324
           N+  L+KKRN   PF K
Sbjct: 131 NSCDLLKKRNENDPFLK 147


>AB022907-1|BAA86908.1|  615|Apis mellifera glucose oxidase protein.
          Length = 615

 Score = 20.6 bits (41), Expect = 6.6
 Identities = 8/22 (36%), Positives = 13/22 (59%)
 Frame = +1

Query: 313 LFGSLLNGFLILRFFTRNALLL 378
           L G  +NGF + +  +RN + L
Sbjct: 242 LSGDRINGFTVAQTISRNGVRL 263


>EF625897-1|ABR45904.1|  684|Apis mellifera hexamerin protein.
          Length = 684

 Score = 20.2 bits (40), Expect = 8.7
 Identities = 8/16 (50%), Positives = 10/16 (62%)
 Frame = -2

Query: 377 NNNAFLVKKRNIKKPF 330
           NN   L ++RN  KPF
Sbjct: 471 NNGLLLEEQRNDDKPF 486


>EF591128-1|ABQ59246.1|  684|Apis mellifera hexamerin 70a protein.
          Length = 684

 Score = 20.2 bits (40), Expect = 8.7
 Identities = 8/16 (50%), Positives = 10/16 (62%)
 Frame = -2

Query: 377 NNNAFLVKKRNIKKPF 330
           NN   L ++RN  KPF
Sbjct: 471 NNGLLLEEQRNDDKPF 486


>DQ855485-1|ABH88172.1|  128|Apis mellifera chemosensory protein 4
           protein.
          Length = 128

 Score = 20.2 bits (40), Expect = 8.7
 Identities = 6/12 (50%), Positives = 8/12 (66%)
 Frame = -1

Query: 381 LQQQCIPCEEAQ 346
           L+ +C PC E Q
Sbjct: 71  LENECSPCSEKQ 82


>AJ973400-1|CAJ01447.1|  128|Apis mellifera hypothetical protein
           protein.
          Length = 128

 Score = 20.2 bits (40), Expect = 8.7
 Identities = 6/12 (50%), Positives = 8/12 (66%)
 Frame = -1

Query: 381 LQQQCIPCEEAQ 346
           L+ +C PC E Q
Sbjct: 71  LENECSPCSEKQ 82


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 104,851
Number of Sequences: 438
Number of extensions: 1967
Number of successful extensions: 16
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 16
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 16
length of database: 146,343
effective HSP length: 52
effective length of database: 123,567
effective search space used:  9514659
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.2 bits)