Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P06_pT_D23
         (325 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z95559-7|CAB76730.2|  329|Caenorhabditis elegans Hypothetical pr...    27   2.3  
Z29095-2|CAD18875.1| 2056|Caenorhabditis elegans Hypothetical pr...    27   3.1  
Z29095-1|CAA82353.2| 2045|Caenorhabditis elegans Hypothetical pr...    27   3.1  
U00065-2|AAL27237.1|  672|Caenorhabditis elegans Prion-like-(q/n...    27   4.1  
U67947-2|AAB07558.1|  204|Caenorhabditis elegans Hypothetical pr...    26   5.4  
Z30215-6|CAF31477.2| 1144|Caenorhabditis elegans Hypothetical pr...    26   7.2  
Z78410-11|CAB01639.2|  315|Caenorhabditis elegans Hypothetical p...    25   9.5  
U97005-11|AAB52288.1|  891|Caenorhabditis elegans Hypothetical p...    25   9.5  

>Z95559-7|CAB76730.2|  329|Caenorhabditis elegans Hypothetical
           protein Y41E3.14 protein.
          Length = 329

 Score = 27.5 bits (58), Expect = 2.3
 Identities = 9/29 (31%), Positives = 17/29 (58%), Gaps = 1/29 (3%)
 Frame = -2

Query: 162 RCVYFTCCVLCIFRLLTSWLF-CLHLLGP 79
           R ++  CC++C F   T+ ++  L L+ P
Sbjct: 238 RAIFIQCCIICFFNTATALIYNALSLMTP 266


>Z29095-2|CAD18875.1| 2056|Caenorhabditis elegans Hypothetical protein
            R10E11.1b protein.
          Length = 2056

 Score = 27.1 bits (57), Expect = 3.1
 Identities = 17/53 (32%), Positives = 26/53 (49%), Gaps = 1/53 (1%)
 Frame = +2

Query: 47   WLSISERSKCMGPSRCRQNSQ-EVSRRNMQSTQQVKYTQRQLGRCRQLGTHTP 202
            WL + E    + P+R +  SQ  +   N+Q+ QQ +  Q+Q G  R  G   P
Sbjct: 1890 WLRMRENQNLV-PNRMQGYSQMSMGSSNLQNLQQQQLQQQQAGAMRGGGGFAP 1941


>Z29095-1|CAA82353.2| 2045|Caenorhabditis elegans Hypothetical protein
            R10E11.1a protein.
          Length = 2045

 Score = 27.1 bits (57), Expect = 3.1
 Identities = 17/53 (32%), Positives = 26/53 (49%), Gaps = 1/53 (1%)
 Frame = +2

Query: 47   WLSISERSKCMGPSRCRQNSQ-EVSRRNMQSTQQVKYTQRQLGRCRQLGTHTP 202
            WL + E    + P+R +  SQ  +   N+Q+ QQ +  Q+Q G  R  G   P
Sbjct: 1879 WLRMRENQNLV-PNRMQGYSQMSMGSSNLQNLQQQQLQQQQAGAMRGGGGFAP 1930


>U00065-2|AAL27237.1|  672|Caenorhabditis elegans
           Prion-like-(q/n-rich)-domain-bearingprotein protein 25
           protein.
          Length = 672

 Score = 26.6 bits (56), Expect = 4.1
 Identities = 16/50 (32%), Positives = 26/50 (52%), Gaps = 2/50 (4%)
 Frame = +2

Query: 2   TVSHNRNSIAFKIAFWLSISERSKCMGPSRCRQNSQEVSR--RNMQSTQQ 145
           +VS + N +      +  +S  S+C+G  +C  NSQ +S   +  Q TQQ
Sbjct: 381 SVSCSTNQVCISNQCYNYVSIGSQCVGSQQCLSNSQCISSICQCPQGTQQ 430


>U67947-2|AAB07558.1|  204|Caenorhabditis elegans Hypothetical
           protein H03E18.2 protein.
          Length = 204

 Score = 26.2 bits (55), Expect = 5.4
 Identities = 15/31 (48%), Positives = 21/31 (67%)
 Frame = -2

Query: 123 RLLTSWLFCLHLLGPIHLLRSLIDNQKAILN 31
           +LL S LFCLHL GP   L S +D +K +++
Sbjct: 171 QLLVS-LFCLHLSGP---LFSWLDTEKKLIS 197


>Z30215-6|CAF31477.2| 1144|Caenorhabditis elegans Hypothetical protein
            F40F12.5 protein.
          Length = 1144

 Score = 25.8 bits (54), Expect = 7.2
 Identities = 14/49 (28%), Positives = 21/49 (42%)
 Frame = -2

Query: 192  VPSCLHRPSCRCVYFTCCVLCIFRLLTSWLFCLHLLGPIHLLRSLIDNQ 46
            VP+C    +C  VY   C L      +  +FC       HLL  + D++
Sbjct: 955  VPACSKCQACSEVYCPTCFLTRRVFYSEVIFCRKCFHHTHLLPEIEDHK 1003


>Z78410-11|CAB01639.2|  315|Caenorhabditis elegans Hypothetical
           protein C51E3.4 protein.
          Length = 315

 Score = 25.4 bits (53), Expect = 9.5
 Identities = 8/31 (25%), Positives = 15/31 (48%)
 Frame = -2

Query: 174 RPSCRCVYFTCCVLCIFRLLTSWLFCLHLLG 82
           R  C  +    C+  +  L   +++C+HL G
Sbjct: 41  RSPCHILISLTCICDLLHLCAQFVYCVHLFG 71


>U97005-11|AAB52288.1|  891|Caenorhabditis elegans Hypothetical
           protein F19F10.10 protein.
          Length = 891

 Score = 25.4 bits (53), Expect = 9.5
 Identities = 9/33 (27%), Positives = 18/33 (54%)
 Frame = +2

Query: 56  ISERSKCMGPSRCRQNSQEVSRRNMQSTQQVKY 154
           +S+ +KC G  R R+N  +  ++  Q +   +Y
Sbjct: 342 LSDTTKCSGEGRLRKNFTDTFKKVTQGSASTRY 374


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 5,206,036
Number of Sequences: 27780
Number of extensions: 71699
Number of successful extensions: 303
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 296
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 303
length of database: 12,740,198
effective HSP length: 71
effective length of database: 10,767,818
effective search space used: 387641448
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)