Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P06_pT_D23
         (325 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ667186-1|ABG75738.1|  447|Apis mellifera glutamate-gated chlor...    23   1.2  
DQ667185-1|ABG75737.1|  447|Apis mellifera glutamate-gated chlor...    23   1.2  
AY739658-1|AAU85297.1|  664|Apis mellifera hyperpolarization-act...    22   1.6  
AY280848-1|AAQ16312.1|  632|Apis mellifera hyperpolarization-act...    22   1.6  
U70841-1|AAC47455.1|  377|Apis mellifera ultraviolet sensitive o...    21   2.8  
DQ667193-1|ABG75745.1|  510|Apis mellifera cys-loop ligand-gated...    21   2.8  
AF004168-1|AAC13417.1|  377|Apis mellifera blue-sensitive opsin ...    21   2.8  
AJ968562-1|CAI91546.1|  998|Apis mellifera protein ( Apis mellif...    20   6.5  
AF388659-1|AAK71995.1|  782|Apis mellifera 1D-myo-inositol-trisp...    20   6.5  

>DQ667186-1|ABG75738.1|  447|Apis mellifera glutamate-gated chloride
           channel protein.
          Length = 447

 Score = 22.6 bits (46), Expect = 1.2
 Identities = 7/18 (38%), Positives = 11/18 (61%)
 Frame = -2

Query: 156 VYFTCCVLCIFRLLTSWL 103
           +Y  CC+L I   ++ WL
Sbjct: 248 IYIPCCMLVIVSWVSFWL 265


>DQ667185-1|ABG75737.1|  447|Apis mellifera glutamate-gated chloride
           channel protein.
          Length = 447

 Score = 22.6 bits (46), Expect = 1.2
 Identities = 7/18 (38%), Positives = 11/18 (61%)
 Frame = -2

Query: 156 VYFTCCVLCIFRLLTSWL 103
           +Y  CC+L I   ++ WL
Sbjct: 248 IYIPCCMLVIVSWVSFWL 265


>AY739658-1|AAU85297.1|  664|Apis mellifera
           hyperpolarization-activated ion channelvariant L
           protein.
          Length = 664

 Score = 22.2 bits (45), Expect = 1.6
 Identities = 10/39 (25%), Positives = 19/39 (48%)
 Frame = -2

Query: 138 VLCIFRLLTSWLFCLHLLGPIHLLRSLIDNQKAILNAIE 22
           ++C+  L+  W  CL  L P  +L+    N    +N ++
Sbjct: 282 LICMMLLIGHWSGCLQFLVP--MLQGFPSNSWVAINELQ 318


>AY280848-1|AAQ16312.1|  632|Apis mellifera
           hyperpolarization-activated ion channel protein.
          Length = 632

 Score = 22.2 bits (45), Expect = 1.6
 Identities = 10/39 (25%), Positives = 19/39 (48%)
 Frame = -2

Query: 138 VLCIFRLLTSWLFCLHLLGPIHLLRSLIDNQKAILNAIE 22
           ++C+  L+  W  CL  L P  +L+    N    +N ++
Sbjct: 250 LICMMLLIGHWSGCLQFLVP--MLQGFPSNSWVAINELQ 286


>U70841-1|AAC47455.1|  377|Apis mellifera ultraviolet sensitive
           opsin protein.
          Length = 377

 Score = 21.4 bits (43), Expect = 2.8
 Identities = 7/19 (36%), Positives = 11/19 (57%)
 Frame = +2

Query: 149 KYTQRQLGRCRQLGTHTPK 205
           +Y Q    RC+ +G H P+
Sbjct: 342 RYRQELQKRCKWMGIHEPE 360


>DQ667193-1|ABG75745.1|  510|Apis mellifera cys-loop ligand-gated
           ion channel subunit protein.
          Length = 510

 Score = 21.4 bits (43), Expect = 2.8
 Identities = 8/22 (36%), Positives = 12/22 (54%)
 Frame = -2

Query: 168 SCRCVYFTCCVLCIFRLLTSWL 103
           SC+C+Y     LC+   L  +L
Sbjct: 182 SCKCIYVQSINLCMAGRLFGYL 203


>AF004168-1|AAC13417.1|  377|Apis mellifera blue-sensitive opsin
           protein.
          Length = 377

 Score = 21.4 bits (43), Expect = 2.8
 Identities = 7/19 (36%), Positives = 11/19 (57%)
 Frame = +2

Query: 149 KYTQRQLGRCRQLGTHTPK 205
           +Y Q    RC+ +G H P+
Sbjct: 342 RYRQELQKRCKWMGIHEPE 360


>AJ968562-1|CAI91546.1|  998|Apis mellifera protein ( Apis mellifera
           ORF for hypotheticalprotein. ).
          Length = 998

 Score = 20.2 bits (40), Expect = 6.5
 Identities = 10/23 (43%), Positives = 12/23 (52%)
 Frame = +3

Query: 168 WGGVGNWVLIHQRLCGSKRKNSS 236
           WGG+G  VL    L G+    SS
Sbjct: 563 WGGIGVVVLFAVVLAGATCLGSS 585


>AF388659-1|AAK71995.1|  782|Apis mellifera
           1D-myo-inositol-trisphosphate 3-kinaseisoform A protein.
          Length = 782

 Score = 20.2 bits (40), Expect = 6.5
 Identities = 8/20 (40%), Positives = 12/20 (60%)
 Frame = -2

Query: 60  LIDNQKAILNAIEFRLCDTV 1
           +++NQ A+ N     LCD V
Sbjct: 117 IVENQYAVENNTGSSLCDLV 136


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 61,683
Number of Sequences: 438
Number of extensions: 771
Number of successful extensions: 9
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 9
length of database: 146,343
effective HSP length: 50
effective length of database: 124,443
effective search space used:  7093251
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 39 (20.8 bits)