Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P06_pT_D22
         (724 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC57A10.09c |||High-mobility group non-histone chromatin prote...    60   4e-10
SPCC757.13 |||membrane transporter |Schizosaccharomyces pombe|ch...    31   0.17 
SPCC162.08c |nup211||nuclear pore complex associated protein|Sch...    28   1.2  
SPBC1718.03 |ker1||DNA-directed RNA polymerase I complex subunit...    27   2.7  
SPCC330.04c |mug135||DUF1773 family protein 3|Schizosaccharomyce...    27   3.6  
SPAC1F3.06c |spo15||sporulation protein Spo15|Schizosaccharomyce...    27   3.6  
SPAC10F6.08c |||HMG box protein|Schizosaccharomyces pombe|chr 1|...    26   4.7  
SPCC417.07c |mto1|mbo1, mod20|MT organizer Mto1|Schizosaccharomy...    26   4.7  
SPAC9E9.14 |vps24||vacuolar sorting protein Vps24|Schizosaccharo...    26   4.7  
SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr 3|||...    25   8.3  

>SPAC57A10.09c |||High-mobility group non-histone chromatin
           protein|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 108

 Score = 59.7 bits (138), Expect = 4e-10
 Identities = 29/92 (31%), Positives = 47/92 (51%)
 Frame = -2

Query: 717 KPKAARDTTAPRQPLTGYVRFLNERRDQLRAQQPDLGFAELTRQLASEWSRLPAEEKQQY 538
           K    +D   P++ ++ ++ F  E R++++   PD  F +L   L   W  L + E++ Y
Sbjct: 6   KSSRKKDPNTPKRNMSAFMFFSIENREKMKTDNPDATFGQLGSLLGKRWKELTSTEREPY 65

Query: 537 LDAADQDKERYVKECAEYKRTNAYKEFTKQQS 442
            + A QDKERY +E  EY    A  E T + S
Sbjct: 66  EEKARQDKERYERERKEYDTKLANGEKTGKAS 97


>SPCC757.13 |||membrane transporter |Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 522

 Score = 31.1 bits (67), Expect = 0.17
 Identities = 13/23 (56%), Positives = 17/23 (73%)
 Frame = -2

Query: 675 LTGYVRFLNERRDQLRAQQPDLG 607
           LTGY  + N+RRD+L A+ P LG
Sbjct: 477 LTGYYIYENKRRDRLLAEDPSLG 499


>SPCC162.08c |nup211||nuclear pore complex associated
            protein|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1837

 Score = 28.3 bits (60), Expect = 1.2
 Identities = 28/120 (23%), Positives = 53/120 (44%)
 Frame = -2

Query: 711  KAARDTTAPRQPLTGYVRFLNERRDQLRAQQPDLGFAELTRQLASEWSRLPAEEKQQYLD 532
            K   +  + ++ L   V+ L+     LR   P  G  E   ++A   S+L  E  +QY +
Sbjct: 1528 KEIHELRSDKEGLVQQVQNLSAELAALREHSPTQGSLENADEIARLRSQL--ESTKQYYE 1585

Query: 531  AADQDKERYVKECAEYKRTNAYKEFTKQQSDLQDGSLSKKLRQVPQVDASVSG*NGNTNL 352
                 KE+  +  A      A KE TK++ + Q    S++++++ +     S  N + N+
Sbjct: 1586 -----KEKETEILAARSELVAEKEKTKEELENQLNEKSQRIKELEEQAQKNSSENTHDNI 1640


>SPBC1718.03 |ker1||DNA-directed RNA polymerase I complex subunit
           subunit Ker1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 147

 Score = 27.1 bits (57), Expect = 2.7
 Identities = 12/30 (40%), Positives = 20/30 (66%)
 Frame = -3

Query: 92  ATEDNIDEYMEKLQKRTNXREKKKTARMKQ 3
           A E+N D +++K  K+   +EKKK AR ++
Sbjct: 98  AREENDDLHLDKETKKRLKKEKKKAARREK 127


>SPCC330.04c |mug135||DUF1773 family protein 3|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 357

 Score = 26.6 bits (56), Expect = 3.6
 Identities = 16/67 (23%), Positives = 34/67 (50%), Gaps = 4/67 (5%)
 Frame = -2

Query: 591 RQLASEWSRLPAEEKQQYLDAADQDKERYVK----ECAEYKRTNAYKEFTKQQSDLQDGS 424
           R+   EW +   E+K ++  A ++DK  + K    + AE+K+     +   +++  +D +
Sbjct: 115 RREMGEWKKAREEDKAEWKKAREEDKAEWKKAREEDKAEWKKAREEDKAEWKKAREEDKA 174

Query: 423 LSKKLRQ 403
             KK R+
Sbjct: 175 EWKKARE 181



 Score = 26.6 bits (56), Expect = 3.6
 Identities = 13/48 (27%), Positives = 24/48 (50%), Gaps = 1/48 (2%)
 Frame = -2

Query: 579 SEWSRLPAEEKQQYLDAADQDKERYVKECAEYKR-TNAYKEFTKQQSD 439
           +EW +   E+K ++  A ++DK  + K   E K   N+  E+ K   +
Sbjct: 152 AEWKKAREEDKAEWKKAREEDKAEWKKAREEDKEWRNSMDEWRKSMDE 199


>SPAC1F3.06c |spo15||sporulation protein Spo15|Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 1957

 Score = 26.6 bits (56), Expect = 3.6
 Identities = 18/49 (36%), Positives = 25/49 (51%)
 Frame = -2

Query: 579  SEWSRLPAEEKQQYLDAADQDKERYVKECAEYKRTNAYKEFTKQQSDLQ 433
            SE SRL     + YLDA +Q    + K   + + T    EFTK  +DL+
Sbjct: 1280 SELSRLTVLSLENYLDAFNQ--VNFKKMELDNRLTTTDAEFTKVVADLE 1326


>SPAC10F6.08c |||HMG box protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 341

 Score = 26.2 bits (55), Expect = 4.7
 Identities = 26/98 (26%), Positives = 49/98 (50%), Gaps = 8/98 (8%)
 Frame = -2

Query: 657 FLNERRDQLRAQQPDLGFAELTRQLASEWSRLPAEEKQQY----LDAADQDKE----RYV 502
           F + ++ +L+A+   L    L + L   W+ L  EEK+ Y    L A ++ +E    R  
Sbjct: 205 FSSIQKPKLKAEGSTLKGQALKKTLEDTWNNLTEEEKKPYHEGLLAAREKAREARRRRSA 264

Query: 501 KECAEYKRTNAYKEFTKQQSDLQDGSLSKKLRQVPQVD 388
           +  A+ ++  A KE  K +   QD ++S K  Q+ +++
Sbjct: 265 QNSAKLEKEKA-KEKQKDKDQEQD-TVSDK-NQIDEIE 299


>SPCC417.07c |mto1|mbo1, mod20|MT organizer Mto1|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 1115

 Score = 26.2 bits (55), Expect = 4.7
 Identities = 19/85 (22%), Positives = 34/85 (40%), Gaps = 4/85 (4%)
 Frame = -2

Query: 555 EEKQQYLDAADQDKERYVKECAEY----KRTNAYKEFTKQQSDLQDGSLSKKLRQVPQVD 388
           EE ++  D   Q  ERY  +C E+    KR    +E   +  +      S  L Q+   +
Sbjct: 599 EEVEKLTDEITQLSERYNDKCHEFDELQKRLQTLEEENNKAKEDSTSKTSNLLEQLKMTE 658

Query: 387 ASVSG*NGNTNLHRPISAT*QTERI 313
           A V         ++ + A  ++E +
Sbjct: 659 AEVDSLRKENEENKQVIALKESELV 683


>SPAC9E9.14 |vps24||vacuolar sorting protein
           Vps24|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 231

 Score = 26.2 bits (55), Expect = 4.7
 Identities = 16/64 (25%), Positives = 34/64 (53%)
 Frame = -2

Query: 702 RDTTAPRQPLTGYVRFLNERRDQLRAQQPDLGFAELTRQLASEWSRLPAEEKQQYLDAAD 523
           + +T   Q ++  +R L +  + +R    +L  A +  ++  E   LP E+ ++ +D AD
Sbjct: 106 QSSTKIMQDVSSLIR-LPQLSETMRNLSMELTKAGVLEEMRDEMF-LPVEDDEELMDLAD 163

Query: 522 QDKE 511
           +D+E
Sbjct: 164 EDEE 167


>SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr
            3|||Manual
          Length = 1461

 Score = 25.4 bits (53), Expect = 8.3
 Identities = 11/19 (57%), Positives = 14/19 (73%)
 Frame = -2

Query: 471  AYKEFTKQQSDLQDGSLSK 415
            AY EF   Q+ L+DG+LSK
Sbjct: 1143 AYDEFCDFQTSLKDGALSK 1161


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,479,358
Number of Sequences: 5004
Number of extensions: 43736
Number of successful extensions: 169
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 158
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 166
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 339215786
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)