Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P06_pT_D22
(724 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z81137-2|CAB03465.1| 386|Caenorhabditis elegans Hypothetical pr... 63 2e-10
AF000195-3|AAC24268.1| 689|Caenorhabditis elegans Hmg protein 3... 61 9e-10
U22831-3|AAK67237.1| 234|Caenorhabditis elegans Hmg protein 1.2... 58 6e-09
U22831-2|AAK67238.1| 233|Caenorhabditis elegans Hmg protein 1.2... 58 6e-09
U22831-1|AAK20071.1| 235|Caenorhabditis elegans Hmg protein 1.2... 58 6e-09
AF056577-1|AAC78599.1| 235|Caenorhabditis elegans high mobility... 58 6e-09
U10401-6|AAA19061.1| 697|Caenorhabditis elegans Hmg protein 4 p... 51 7e-07
AL110490-14|CAB54448.2| 95|Caenorhabditis elegans Hypothetical... 48 7e-06
AF056576-1|AAC78598.1| 95|Caenorhabditis elegans high mobility... 48 7e-06
U80032-3|AAM15556.1| 404|Caenorhabditis elegans Sox (mammalian ... 46 2e-05
U37532-1|AAC05308.1| 438|Caenorhabditis elegans HMG-box protein... 46 4e-05
AF043703-1|AAK21504.1| 437|Caenorhabditis elegans Posterior pha... 44 8e-05
Z69792-4|CAA93665.1| 212|Caenorhabditis elegans Hypothetical pr... 44 1e-04
U38377-1|AAA79747.2| 283|Caenorhabditis elegans Sox (mammalian ... 44 1e-04
Z72517-8|CAA96697.2| 1883|Caenorhabditis elegans Hypothetical pr... 42 4e-04
Z72503-12|CAA96600.2| 1883|Caenorhabditis elegans Hypothetical p... 42 4e-04
Z72503-5|CAI79155.1| 513|Caenorhabditis elegans Hypothetical pr... 42 4e-04
AC024859-13|AAK29965.2| 338|Caenorhabditis elegans Hypothetical... 42 6e-04
Z99171-6|CAB16309.2| 128|Caenorhabditis elegans Hypothetical pr... 38 0.010
U38377-2|AAN72421.1| 199|Caenorhabditis elegans Sox (mammalian ... 35 0.051
U64608-9|AAX88815.1| 319|Caenorhabditis elegans Egg laying defe... 34 0.12
U64608-8|AAO91671.1| 316|Caenorhabditis elegans Egg laying defe... 34 0.12
U64608-7|AAX88814.1| 422|Caenorhabditis elegans Egg laying defe... 34 0.12
U64608-6|AAB04597.2| 470|Caenorhabditis elegans Egg laying defe... 34 0.12
AF097319-1|AAD12252.1| 470|Caenorhabditis elegans Sox domain pr... 34 0.12
U64862-5|AAQ91890.1| 2350|Caenorhabditis elegans Lin-5 (five) in... 33 0.21
U64862-4|AAZ32792.1| 2117|Caenorhabditis elegans Lin-5 (five) in... 33 0.21
U64862-3|AAM69078.1| 2396|Caenorhabditis elegans Lin-5 (five) in... 33 0.21
U51998-8|AAA96081.2| 241|Caenorhabditis elegans Hypothetical pr... 33 0.21
AF016656-3|AAB66037.2| 515|Caenorhabditis elegans Hypothetical ... 33 0.21
Z49912-7|CAI70412.1| 554|Caenorhabditis elegans Hypothetical pr... 31 0.83
Z49912-6|CAA90137.1| 615|Caenorhabditis elegans Hypothetical pr... 31 0.83
AF106589-2|AAC78230.1| 107|Caenorhabditis elegans Hypothetical ... 31 1.1
AB038044-1|BAB62394.1| 852|Caenorhabditis elegans N-deacetylase... 30 1.5
AB037942-1|BAB61757.1| 814|Caenorhabditis elegans N-deacetylase... 30 1.5
AB037941-1|BAB61756.1| 826|Caenorhabditis elegans N-deactylase/... 30 1.5
AL024499-5|CAC42318.1| 562|Caenorhabditis elegans Hypothetical ... 29 2.5
AL024499-4|CAC42317.1| 617|Caenorhabditis elegans Hypothetical ... 29 2.5
AL024499-3|CAA19707.1| 618|Caenorhabditis elegans Hypothetical ... 29 2.5
AF031840-1|AAC13676.1| 562|Caenorhabditis elegans GLY6c protein. 29 2.5
AF031839-1|AAC13675.1| 617|Caenorhabditis elegans GLY6b protein. 29 2.5
AF031838-1|AAC13674.1| 618|Caenorhabditis elegans GLY6a protein. 29 2.5
AY130758-2|AAN61518.1| 18519|Caenorhabditis elegans 2MDa_2 prote... 29 4.4
AY130758-1|AAN61517.1| 18534|Caenorhabditis elegans 2MDa_1 prote... 29 4.4
AL132948-25|CAC51048.1| 438|Caenorhabditis elegans Hypothetical... 28 5.9
Z68006-2|CAA91996.1| 560|Caenorhabditis elegans Hypothetical pr... 28 7.8
Z67738-5|CAA91547.1| 484|Caenorhabditis elegans Hypothetical pr... 28 7.8
Z67735-4|CAA91533.1| 484|Caenorhabditis elegans Hypothetical pr... 28 7.8
U40944-1|AAA81718.3| 341|Caenorhabditis elegans Hypothetical pr... 28 7.8
U10414-4|AAW30666.1| 641|Caenorhabditis elegans Neurofibromatos... 28 7.8
U10414-3|AAK68385.1| 709|Caenorhabditis elegans Neurofibromatos... 28 7.8
U10414-2|AAA19073.1| 654|Caenorhabditis elegans Neurofibromatos... 28 7.8
>Z81137-2|CAB03465.1| 386|Caenorhabditis elegans Hypothetical
protein W02D9.3 protein.
Length = 386
Score = 63.3 bits (147), Expect = 2e-10
Identities = 35/108 (32%), Positives = 61/108 (56%), Gaps = 4/108 (3%)
Frame = -2
Query: 699 DTTAPRQPLTGYVRFLNERRDQLRAQQPDLGFAELTRQLASEWSRLPAEEKQQYLDAADQ 520
D AP++ +GYV F+ RR + + E+ LA++W +L AEE+ + AD+
Sbjct: 123 DPNAPKRNRSGYVHFIIHRRASY--SKAVMSQREINISLAADWQKLTAEERIPFQQRADE 180
Query: 519 DKERYVKECAEYKRTNAYKEFTKQQ----SDLQDGSLSKKLRQVPQVD 388
+K +Y++ EYK+T+++KEF K++ S +GS + K R+ D
Sbjct: 181 EKVKYLELMEEYKKTDSHKEFQKKRAKFLSSQSNGSKNAKKRRQADSD 228
Score = 37.1 bits (82), Expect = 0.013
Identities = 17/42 (40%), Positives = 25/42 (59%)
Frame = -3
Query: 359 PIFTDQFLQHNKLRESELRQLRKANSDYEQQNAILHRHAEEV 234
PIFT +F+ +NK R++ RQL S E + LH+H +V
Sbjct: 266 PIFTPEFMTYNKTRDTYRRQLAIERSHVEHELEALHQHDMDV 307
>AF000195-3|AAC24268.1| 689|Caenorhabditis elegans Hmg protein 3
protein.
Length = 689
Score = 60.9 bits (141), Expect = 9e-10
Identities = 33/118 (27%), Positives = 57/118 (48%), Gaps = 5/118 (4%)
Frame = -2
Query: 720 RKPKAARDTTAPRQPLTGYVRFLNERRDQLRAQQPDLGFAELTRQLASEWSRLPAEEKQQ 541
+K K +D P++ T Y+ + N R+ ++ LG ++ ++ ++W + A++K++
Sbjct: 550 KKGKKTKDPNEPKRATTAYIIWFNANRNSMKEDGDTLG--DVAKKAGAKWKSMSADDKKE 607
Query: 540 YLDAADQDKERYVKECAEYKRTNAYKE-----FTKQQSDLQDGSLSKKLRQVPQVDAS 382
+ D A QDK RY E EYK+ E TK+ SD G K + D S
Sbjct: 608 WNDKAAQDKARYEAEMKEYKKNGGGVEKASGPSTKKSSDQSPGKQFKSKEHISDTDDS 665
>U22831-3|AAK67237.1| 234|Caenorhabditis elegans Hmg protein 1.2,
isoform b protein.
Length = 234
Score = 58.0 bits (134), Expect = 6e-09
Identities = 23/81 (28%), Positives = 44/81 (54%)
Frame = -2
Query: 723 KRKPKAARDTTAPRQPLTGYVRFLNERRDQLRAQQPDLGFAELTRQLASEWSRLPAEEKQ 544
+++ +A +D AP++ L+ + + ++R +++A PD ++ ++L W +P E K
Sbjct: 122 RKRKRAKKDPHAPKRALSAFFFYSQDKRPEIQAGHPDWKVGQVAQELGKMWKLVPQETKD 181
Query: 543 QYLDAADQDKERYVKECAEYK 481
Y A DK+RY E YK
Sbjct: 182 MYEQKAQADKDRYADEMRNYK 202
Score = 31.5 bits (68), Expect = 0.63
Identities = 14/56 (25%), Positives = 32/56 (57%), Gaps = 2/56 (3%)
Frame = -2
Query: 600 ELTRQLASEWSRLPAEEKQQYLDAADQDKERYVKE--CAEYKRTNAYKEFTKQQSD 439
E++++ + +W + +EK+++ + A +D ERY E A Y +A ++ + + D
Sbjct: 75 EISKKCSEKWKTMVDDEKRRFYELAQKDAERYQAEVSVAAYGGEDAMRKRKRAKKD 130
>U22831-2|AAK67238.1| 233|Caenorhabditis elegans Hmg protein 1.2,
isoform c protein.
Length = 233
Score = 58.0 bits (134), Expect = 6e-09
Identities = 23/81 (28%), Positives = 44/81 (54%)
Frame = -2
Query: 723 KRKPKAARDTTAPRQPLTGYVRFLNERRDQLRAQQPDLGFAELTRQLASEWSRLPAEEKQ 544
+++ +A +D AP++ L+ + + ++R +++A PD ++ ++L W +P E K
Sbjct: 121 RKRKRAKKDPHAPKRALSAFFFYSQDKRPEIQAGHPDWKVGQVAQELGKMWKLVPQETKD 180
Query: 543 QYLDAADQDKERYVKECAEYK 481
Y A DK+RY E YK
Sbjct: 181 MYEQKAQADKDRYADEMRNYK 201
Score = 36.7 bits (81), Expect = 0.017
Identities = 14/54 (25%), Positives = 32/54 (59%)
Frame = -2
Query: 600 ELTRQLASEWSRLPAEEKQQYLDAADQDKERYVKECAEYKRTNAYKEFTKQQSD 439
E++++ + +W + +EK+++ + A +D ERY E A Y +A ++ + + D
Sbjct: 76 EISKKCSEKWKTMVDDEKRRFYELAQKDAERYQAEVAAYGGEDAMRKRKRAKKD 129
>U22831-1|AAK20071.1| 235|Caenorhabditis elegans Hmg protein 1.2,
isoform a protein.
Length = 235
Score = 58.0 bits (134), Expect = 6e-09
Identities = 23/81 (28%), Positives = 44/81 (54%)
Frame = -2
Query: 723 KRKPKAARDTTAPRQPLTGYVRFLNERRDQLRAQQPDLGFAELTRQLASEWSRLPAEEKQ 544
+++ +A +D AP++ L+ + + ++R +++A PD ++ ++L W +P E K
Sbjct: 123 RKRKRAKKDPHAPKRALSAFFFYSQDKRPEIQAGHPDWKVGQVAQELGKMWKLVPQETKD 182
Query: 543 QYLDAADQDKERYVKECAEYK 481
Y A DK+RY E YK
Sbjct: 183 MYEQKAQADKDRYADEMRNYK 203
Score = 31.5 bits (68), Expect = 0.63
Identities = 14/56 (25%), Positives = 32/56 (57%), Gaps = 2/56 (3%)
Frame = -2
Query: 600 ELTRQLASEWSRLPAEEKQQYLDAADQDKERYVKE--CAEYKRTNAYKEFTKQQSD 439
E++++ + +W + +EK+++ + A +D ERY E A Y +A ++ + + D
Sbjct: 76 EISKKCSEKWKTMVDDEKRRFYELAQKDAERYQAEVSVAAYGGEDAMRKRKRAKKD 131
>AF056577-1|AAC78599.1| 235|Caenorhabditis elegans high mobility
group protein 1.2 protein.
Length = 235
Score = 58.0 bits (134), Expect = 6e-09
Identities = 23/81 (28%), Positives = 44/81 (54%)
Frame = -2
Query: 723 KRKPKAARDTTAPRQPLTGYVRFLNERRDQLRAQQPDLGFAELTRQLASEWSRLPAEEKQ 544
+++ +A +D AP++ L+ + + ++R +++A PD ++ ++L W +P E K
Sbjct: 123 RKRKRAKKDPHAPKRALSAFFFYSQDKRPEIQAGHPDWKVGQVAQELGKMWKLVPQETKD 182
Query: 543 QYLDAADQDKERYVKECAEYK 481
Y A DK+RY E YK
Sbjct: 183 MYEQKAQADKDRYADEMRNYK 203
Score = 31.5 bits (68), Expect = 0.63
Identities = 14/56 (25%), Positives = 32/56 (57%), Gaps = 2/56 (3%)
Frame = -2
Query: 600 ELTRQLASEWSRLPAEEKQQYLDAADQDKERYVKE--CAEYKRTNAYKEFTKQQSD 439
E++++ + +W + +EK+++ + A +D ERY E A Y +A ++ + + D
Sbjct: 76 EISKKCSEKWKTMVDDEKRRFYELAQKDAERYQAEVSVAAYGGEDAMRKRKRAKKD 131
>U10401-6|AAA19061.1| 697|Caenorhabditis elegans Hmg protein 4
protein.
Length = 697
Score = 51.2 bits (117), Expect = 7e-07
Identities = 22/93 (23%), Positives = 53/93 (56%)
Frame = -2
Query: 720 RKPKAARDTTAPRQPLTGYVRFLNERRDQLRAQQPDLGFAELTRQLASEWSRLPAEEKQQ 541
+K K +D AP++ + Y+++ R++L+ + A++ ++ ++W + +++K++
Sbjct: 545 KKGKKDKDPNAPKRATSAYMQWFLASRNELKEDGDSV--ADVAKKGGAKWKTMSSDDKKK 602
Query: 540 YLDAADQDKERYVKECAEYKRTNAYKEFTKQQS 442
+ + A++DK RY KE EY++ +K S
Sbjct: 603 WEEKAEEDKSRYEKEMKEYRKNGPPSSSSKPSS 635
>AL110490-14|CAB54448.2| 95|Caenorhabditis elegans Hypothetical
protein Y48B6A.14 protein.
Length = 95
Score = 48.0 bits (109), Expect = 7e-06
Identities = 23/82 (28%), Positives = 47/82 (57%)
Frame = -2
Query: 720 RKPKAARDTTAPRQPLTGYVRFLNERRDQLRAQQPDLGFAELTRQLASEWSRLPAEEKQQ 541
+K A+D AP++ ++ + ++ E R+ R ++P +G A++ + EW +L +K +
Sbjct: 17 KKGGKAKDPNAPKRAMSAFFFWMQENRE--RIKKPGMGVADVAKAAGVEWGKL--TDKSR 72
Query: 540 YLDAADQDKERYVKECAEYKRT 475
+ A DK+RY + A YK++
Sbjct: 73 WEKKAADDKKRYEVDIANYKKS 94
>AF056576-1|AAC78598.1| 95|Caenorhabditis elegans high mobility
group protein 1.1 protein.
Length = 95
Score = 48.0 bits (109), Expect = 7e-06
Identities = 23/82 (28%), Positives = 47/82 (57%)
Frame = -2
Query: 720 RKPKAARDTTAPRQPLTGYVRFLNERRDQLRAQQPDLGFAELTRQLASEWSRLPAEEKQQ 541
+K A+D AP++ ++ + ++ E R+ R ++P +G A++ + EW +L +K +
Sbjct: 17 KKGGKAKDPNAPKRAMSAFFFWMQENRE--RIKKPGMGVADVAKAAGVEWGKL--TDKSR 72
Query: 540 YLDAADQDKERYVKECAEYKRT 475
+ A DK+RY + A YK++
Sbjct: 73 WEKKAADDKKRYEVDIANYKKS 94
>U80032-3|AAM15556.1| 404|Caenorhabditis elegans Sox (mammalian sry
box) familyprotein 1 protein.
Length = 404
Score = 46.4 bits (105), Expect = 2e-05
Identities = 28/98 (28%), Positives = 54/98 (55%), Gaps = 1/98 (1%)
Frame = -2
Query: 684 RQPLTGYVRFLNERRDQLRAQQPDLGFAELTRQLASEWSRLPAEEKQQYLDAADQDKERY 505
++P+ ++ + R ++ QPD+ AE+++QL S W L EEK ++ A++ + +
Sbjct: 94 KRPMNAFMVWSQMERRKICEHQPDMHNAEISKQLGSRWRSLTDEEKAPFVAEAERLRVCH 153
Query: 504 VKECAEYKRTNAYKEFTKQQSDLQDGSLSKKLR-QVPQ 394
++E +YK YK K + + DG+L + + Q PQ
Sbjct: 154 MQEYPDYK----YKPRKKPKKN-PDGTLQQPAQPQAPQ 186
>U37532-1|AAC05308.1| 438|Caenorhabditis elegans HMG-box protein
protein.
Length = 438
Score = 45.6 bits (103), Expect = 4e-05
Identities = 28/99 (28%), Positives = 47/99 (47%), Gaps = 2/99 (2%)
Frame = -2
Query: 711 KAARDTTAPRQPLTGYVRFLNERRDQLRAQ--QPDLGFAELTRQLASEWSRLPAEEKQQY 538
KA +D ++PL +V F+ E R L + + AEL ++L W L EE+ +Y
Sbjct: 185 KAKKDDHV-KKPLNAFVWFMKENRKALLEEIGNNEKQSAELNKELGKRWHDLSKEEQAKY 243
Query: 537 LDAADQDKERYVKECAEYKRTNAYKEFTKQQSDLQDGSL 421
+ A +DKE + + E+ Y K+ +D S+
Sbjct: 244 FEMAKKDKETHKERYPEWSARENYAVNKKKTKKRRDKSI 282
>AF043703-1|AAK21504.1| 437|Caenorhabditis elegans Posterior
pharynx defect protein 1 protein.
Length = 437
Score = 44.4 bits (100), Expect = 8e-05
Identities = 27/99 (27%), Positives = 47/99 (47%), Gaps = 2/99 (2%)
Frame = -2
Query: 711 KAARDTTAPRQPLTGYVRFLNERRDQLRAQ--QPDLGFAELTRQLASEWSRLPAEEKQQY 538
KA +D ++PL ++ F+ E R L + + AEL ++L W L EE+ +Y
Sbjct: 184 KAKKDDHV-KKPLNAFMWFMKENRKALLEEIGNNEKQSAELNKELGKRWHDLSKEEQAKY 242
Query: 537 LDAADQDKERYVKECAEYKRTNAYKEFTKQQSDLQDGSL 421
+ A +DKE + + E+ Y K+ +D S+
Sbjct: 243 FEMAKKDKETHKERYPEWSARENYAVNKKKTKKRRDKSI 281
>Z69792-4|CAA93665.1| 212|Caenorhabditis elegans Hypothetical
protein F40E10.2 protein.
Length = 212
Score = 43.6 bits (98), Expect = 1e-04
Identities = 16/68 (23%), Positives = 42/68 (61%)
Frame = -2
Query: 684 RQPLTGYVRFLNERRDQLRAQQPDLGFAELTRQLASEWSRLPAEEKQQYLDAADQDKERY 505
++P+ ++ + +R ++ P + +E++++L +EW +L +EK+ ++D A + + +
Sbjct: 49 KRPMNAFMVWSRGQRRKMAQDNPKMHNSEISKRLGAEWKQLSEQEKRPFIDEAKRLRALH 108
Query: 504 VKECAEYK 481
+KE +YK
Sbjct: 109 MKEHPDYK 116
>U38377-1|AAA79747.2| 283|Caenorhabditis elegans Sox (mammalian sry
box) familyprotein 2, isoform a protein.
Length = 283
Score = 43.6 bits (98), Expect = 1e-04
Identities = 16/68 (23%), Positives = 42/68 (61%)
Frame = -2
Query: 684 RQPLTGYVRFLNERRDQLRAQQPDLGFAELTRQLASEWSRLPAEEKQQYLDAADQDKERY 505
++P+ ++ + +R ++ + P + +E++++L +EW L +EK+ ++D A + + +
Sbjct: 61 KRPMNAFMVWSRGQRKKMALENPKMHNSEISKRLGTEWKMLSEQEKRPFIDEAKRLRAIH 120
Query: 504 VKECAEYK 481
+KE +YK
Sbjct: 121 MKEHPDYK 128
>Z72517-8|CAA96697.2| 1883|Caenorhabditis elegans Hypothetical protein
C26C6.1a protein.
Length = 1883
Score = 41.9 bits (94), Expect = 4e-04
Identities = 16/45 (35%), Positives = 28/45 (62%)
Frame = -2
Query: 672 TGYVRFLNERRDQLRAQQPDLGFAELTRQLASEWSRLPAEEKQQY 538
+GY+ F E R ++ + PD GF E+++ + EW +L E+K+ Y
Sbjct: 1454 SGYILFSAEVRKRIMHENPDAGFGEVSKIVGIEWKKLSEEQKKHY 1498
>Z72503-12|CAA96600.2| 1883|Caenorhabditis elegans Hypothetical
protein C26C6.1a protein.
Length = 1883
Score = 41.9 bits (94), Expect = 4e-04
Identities = 16/45 (35%), Positives = 28/45 (62%)
Frame = -2
Query: 672 TGYVRFLNERRDQLRAQQPDLGFAELTRQLASEWSRLPAEEKQQY 538
+GY+ F E R ++ + PD GF E+++ + EW +L E+K+ Y
Sbjct: 1454 SGYILFSAEVRKRIMHENPDAGFGEVSKIVGIEWKKLSEEQKKHY 1498
>Z72503-5|CAI79155.1| 513|Caenorhabditis elegans Hypothetical
protein C26C6.1b protein.
Length = 513
Score = 41.9 bits (94), Expect = 4e-04
Identities = 16/45 (35%), Positives = 28/45 (62%)
Frame = -2
Query: 672 TGYVRFLNERRDQLRAQQPDLGFAELTRQLASEWSRLPAEEKQQY 538
+GY+ F E R ++ + PD GF E+++ + EW +L E+K+ Y
Sbjct: 84 SGYILFSAEVRKRIMHENPDAGFGEVSKIVGIEWKKLSEEQKKHY 128
>AC024859-13|AAK29965.2| 338|Caenorhabditis elegans Hypothetical
protein Y71H2AM.17 protein.
Length = 338
Score = 41.5 bits (93), Expect = 6e-04
Identities = 18/76 (23%), Positives = 37/76 (48%)
Frame = -2
Query: 708 AARDTTAPRQPLTGYVRFLNERRDQLRAQQPDLGFAELTRQLASEWSRLPAEEKQQYLDA 529
++R P +PL Y+R+ + ++RA+ P+ ++ + + W LP EK Y
Sbjct: 19 SSRGPKVPERPLQPYMRYSRKMWPKVRAENPEAQLWDIGKMIGKYWLDLPDGEKSHYQHE 78
Query: 528 ADQDKERYVKECAEYK 481
+ +K Y K+ ++
Sbjct: 79 YELEKADYEKQMKHFQ 94
>Z99171-6|CAB16309.2| 128|Caenorhabditis elegans Hypothetical
protein F47G4.6 protein.
Length = 128
Score = 37.5 bits (83), Expect = 0.010
Identities = 15/64 (23%), Positives = 32/64 (50%)
Frame = -2
Query: 672 TGYVRFLNERRDQLRAQQPDLGFAELTRQLASEWSRLPAEEKQQYLDAADQDKERYVKEC 493
+ Y F ER+ + P F ++++++A +W L EEK+ Y +++++ +
Sbjct: 54 SAYALFFRERQSLEKRAAPYATFGQISQKIARQWDSLTEEEKKAYKQRCEKNRKTSIANA 113
Query: 492 AEYK 481
E K
Sbjct: 114 VEEK 117
>U38377-2|AAN72421.1| 199|Caenorhabditis elegans Sox (mammalian sry
box) familyprotein 2, isoform b protein.
Length = 199
Score = 35.1 bits (77), Expect = 0.051
Identities = 13/41 (31%), Positives = 28/41 (68%)
Frame = -2
Query: 603 AELTRQLASEWSRLPAEEKQQYLDAADQDKERYVKECAEYK 481
+E++++L +EW L +EK+ ++D A + + ++KE +YK
Sbjct: 4 SEISKRLGTEWKMLSEQEKRPFIDEAKRLRAIHMKEHPDYK 44
>U64608-9|AAX88815.1| 319|Caenorhabditis elegans Egg laying
defective protein 13,isoform d protein.
Length = 319
Score = 33.9 bits (74), Expect = 0.12
Identities = 12/68 (17%), Positives = 36/68 (52%)
Frame = -2
Query: 684 RQPLTGYVRFLNERRDQLRAQQPDLGFAELTRQLASEWSRLPAEEKQQYLDAADQDKERY 505
++P+ ++ + + R ++ PD+ + +++ L S W + EKQ Y + + + +
Sbjct: 179 KRPMNAFMVWARDERRKILKAYPDMHNSNISKILGSRWKGMSNSEKQPYYEEQSRLSKLH 238
Query: 504 VKECAEYK 481
+++ +Y+
Sbjct: 239 MEQHPDYR 246
>U64608-8|AAO91671.1| 316|Caenorhabditis elegans Egg laying
defective protein 13,isoform b protein.
Length = 316
Score = 33.9 bits (74), Expect = 0.12
Identities = 12/68 (17%), Positives = 36/68 (52%)
Frame = -2
Query: 684 RQPLTGYVRFLNERRDQLRAQQPDLGFAELTRQLASEWSRLPAEEKQQYLDAADQDKERY 505
++P+ ++ + + R ++ PD+ + +++ L S W + EKQ Y + + + +
Sbjct: 176 KRPMNAFMVWARDERRKILKAYPDMHNSNISKILGSRWKGMSNSEKQPYYEEQSRLSKLH 235
Query: 504 VKECAEYK 481
+++ +Y+
Sbjct: 236 MEQHPDYR 243
>U64608-7|AAX88814.1| 422|Caenorhabditis elegans Egg laying
defective protein 13,isoform c protein.
Length = 422
Score = 33.9 bits (74), Expect = 0.12
Identities = 12/68 (17%), Positives = 36/68 (52%)
Frame = -2
Query: 684 RQPLTGYVRFLNERRDQLRAQQPDLGFAELTRQLASEWSRLPAEEKQQYLDAADQDKERY 505
++P+ ++ + + R ++ PD+ + +++ L S W + EKQ Y + + + +
Sbjct: 282 KRPMNAFMVWARDERRKILKAYPDMHNSNISKILGSRWKGMSNSEKQPYYEEQSRLSKLH 341
Query: 504 VKECAEYK 481
+++ +Y+
Sbjct: 342 MEQHPDYR 349
>U64608-6|AAB04597.2| 470|Caenorhabditis elegans Egg laying
defective protein 13,isoform a protein.
Length = 470
Score = 33.9 bits (74), Expect = 0.12
Identities = 12/68 (17%), Positives = 36/68 (52%)
Frame = -2
Query: 684 RQPLTGYVRFLNERRDQLRAQQPDLGFAELTRQLASEWSRLPAEEKQQYLDAADQDKERY 505
++P+ ++ + + R ++ PD+ + +++ L S W + EKQ Y + + + +
Sbjct: 330 KRPMNAFMVWARDERRKILKAYPDMHNSNISKILGSRWKGMSNSEKQPYYEEQSRLSKLH 389
Query: 504 VKECAEYK 481
+++ +Y+
Sbjct: 390 MEQHPDYR 397
>AF097319-1|AAD12252.1| 470|Caenorhabditis elegans Sox domain
protein COG-2 protein.
Length = 470
Score = 33.9 bits (74), Expect = 0.12
Identities = 12/68 (17%), Positives = 36/68 (52%)
Frame = -2
Query: 684 RQPLTGYVRFLNERRDQLRAQQPDLGFAELTRQLASEWSRLPAEEKQQYLDAADQDKERY 505
++P+ ++ + + R ++ PD+ + +++ L S W + EKQ Y + + + +
Sbjct: 330 KRPMNAFMVWARDERRKILKAYPDMHNSNISKILGSRWKGMSNSEKQPYYEEQSRLSKLH 389
Query: 504 VKECAEYK 481
+++ +Y+
Sbjct: 390 MEQHPDYR 397
>U64862-5|AAQ91890.1| 2350|Caenorhabditis elegans Lin-5 (five)
interacting proteinprotein 1, isoform d protein.
Length = 2350
Score = 33.1 bits (72), Expect = 0.21
Identities = 21/64 (32%), Positives = 32/64 (50%), Gaps = 1/64 (1%)
Frame = -3
Query: 422 YQRSYGRFLK*TLQFLGEMEIPIFTDQFLQHNKLRES-ELRQLRKANSDYEQQNAILHRH 246
YQ+ + ++E I Q L+ N R + EL +LR+ SDYE Q +L RH
Sbjct: 772 YQKQKDEHARHLFDIRHKLETEIKGRQDLEKNGARNNDELDKLRQTISDYESQINLLRRH 831
Query: 245 AEEV 234
+E+
Sbjct: 832 NDEL 835
>U64862-4|AAZ32792.1| 2117|Caenorhabditis elegans Lin-5 (five)
interacting proteinprotein 1, isoform b protein.
Length = 2117
Score = 33.1 bits (72), Expect = 0.21
Identities = 21/64 (32%), Positives = 32/64 (50%), Gaps = 1/64 (1%)
Frame = -3
Query: 422 YQRSYGRFLK*TLQFLGEMEIPIFTDQFLQHNKLRES-ELRQLRKANSDYEQQNAILHRH 246
YQ+ + ++E I Q L+ N R + EL +LR+ SDYE Q +L RH
Sbjct: 845 YQKQKDEHARHLFDIRHKLETEIKGRQDLEKNGARNNDELDKLRQTISDYESQINLLRRH 904
Query: 245 AEEV 234
+E+
Sbjct: 905 NDEL 908
>U64862-3|AAM69078.1| 2396|Caenorhabditis elegans Lin-5 (five)
interacting proteinprotein 1, isoform a protein.
Length = 2396
Score = 33.1 bits (72), Expect = 0.21
Identities = 21/64 (32%), Positives = 32/64 (50%), Gaps = 1/64 (1%)
Frame = -3
Query: 422 YQRSYGRFLK*TLQFLGEMEIPIFTDQFLQHNKLRES-ELRQLRKANSDYEQQNAILHRH 246
YQ+ + ++E I Q L+ N R + EL +LR+ SDYE Q +L RH
Sbjct: 845 YQKQKDEHARHLFDIRHKLETEIKGRQDLEKNGARNNDELDKLRQTISDYESQINLLRRH 904
Query: 245 AEEV 234
+E+
Sbjct: 905 NDEL 908
>U51998-8|AAA96081.2| 241|Caenorhabditis elegans Hypothetical
protein C12D12.5 protein.
Length = 241
Score = 33.1 bits (72), Expect = 0.21
Identities = 19/90 (21%), Positives = 40/90 (44%), Gaps = 1/90 (1%)
Frame = -2
Query: 648 ERRDQLRAQQPDLGFAELTRQLASEWSRLPAEEKQQYLDAADQDKERYVKECAEY-KRTN 472
+RR Q+ A +++++ L +EW ++ EK +++ A Q +E + +Y R
Sbjct: 115 QRRQQIAATGQKFHNSDISKMLGAEWRKMEEHEKVPFVERAKQLREEHFNAHPDYVYRPR 174
Query: 471 AYKEFTKQQSDLQDGSLSKKLRQVPQVDAS 382
K K + S + + V ++S
Sbjct: 175 RRKRVEKSAGSVDSNSADEITKPVNVYNSS 204
>AF016656-3|AAB66037.2| 515|Caenorhabditis elegans Hypothetical
protein C35A11.4 protein.
Length = 515
Score = 33.1 bits (72), Expect = 0.21
Identities = 19/45 (42%), Positives = 23/45 (51%), Gaps = 1/45 (2%)
Frame = +1
Query: 445 LLFCELFISICSFVFRTFFN-ISFFILICSI*VLLFFFSWKSTPL 576
+L C L I F F F N + FILIC I + FFF+ PL
Sbjct: 343 ILVCNLIIFALMFTFYKFENHVLGFILICFICIFTFFFALGPGPL 387
>Z49912-7|CAI70412.1| 554|Caenorhabditis elegans Hypothetical
protein T24F1.3b protein.
Length = 554
Score = 31.1 bits (67), Expect = 0.83
Identities = 22/61 (36%), Positives = 30/61 (49%), Gaps = 2/61 (3%)
Frame = -2
Query: 513 ERYVKECAEYKRTNAYKEFTKQQSDLQDGSLSKKLRQVPQVDASVSG--*NGNTNLHRPI 340
ERYVKE ++ T+ YKE ++ SL+K + D G + N NL RPI
Sbjct: 253 ERYVKEDTPFEWTDEYKEMDLERKIHSYNSLAKGMEITLHEDGVNFGGHIHVNMNLSRPI 312
Query: 339 S 337
S
Sbjct: 313 S 313
>Z49912-6|CAA90137.1| 615|Caenorhabditis elegans Hypothetical
protein T24F1.3a protein.
Length = 615
Score = 31.1 bits (67), Expect = 0.83
Identities = 22/61 (36%), Positives = 30/61 (49%), Gaps = 2/61 (3%)
Frame = -2
Query: 513 ERYVKECAEYKRTNAYKEFTKQQSDLQDGSLSKKLRQVPQVDASVSG--*NGNTNLHRPI 340
ERYVKE ++ T+ YKE ++ SL+K + D G + N NL RPI
Sbjct: 314 ERYVKEDTPFEWTDEYKEMDLERKIHSYNSLAKGMEITLHEDGVNFGGHIHVNMNLSRPI 373
Query: 339 S 337
S
Sbjct: 374 S 374
>AF106589-2|AAC78230.1| 107|Caenorhabditis elegans Hypothetical
protein Y44E3A.3 protein.
Length = 107
Score = 30.7 bits (66), Expect = 1.1
Identities = 15/63 (23%), Positives = 32/63 (50%)
Frame = -3
Query: 644 EEISCEHNSQIWVLQN*PDS*LASGVDFQLKKNNNT*MLQIRIKKDMLKNVRNTKEQMLI 465
EE++ EH ++ +L+ D G ++++ ++ IKKD NTK + ++
Sbjct: 43 EELAAEHKDRLSILKIDVDECDGVGEEYEINSMPTFLLIVDGIKKDQFSGANNTKFEEMV 102
Query: 464 KSS 456
K++
Sbjct: 103 KAA 105
>AB038044-1|BAB62394.1| 852|Caenorhabditis elegans
N-deacetylase/N-sulfotransferase protein.
Length = 852
Score = 30.3 bits (65), Expect = 1.5
Identities = 15/61 (24%), Positives = 29/61 (47%)
Frame = -2
Query: 663 VRFLNERRDQLRAQQPDLGFAELTRQLASEWSRLPAEEKQQYLDAADQDKERYVKECAEY 484
++ LN ++ Q +A+ LT +S + E +YL+ A +++ K C EY
Sbjct: 94 IQILNSQKLQFKAEAVSKNLPVLTTSRRGRYSLIIIENYYKYLNMAQWNRQLLDKYCKEY 153
Query: 483 K 481
+
Sbjct: 154 R 154
>AB037942-1|BAB61757.1| 814|Caenorhabditis elegans
N-deacetylase/N-sulfotransferase protein.
Length = 814
Score = 30.3 bits (65), Expect = 1.5
Identities = 15/61 (24%), Positives = 29/61 (47%)
Frame = -2
Query: 663 VRFLNERRDQLRAQQPDLGFAELTRQLASEWSRLPAEEKQQYLDAADQDKERYVKECAEY 484
++ LN ++ Q +A+ LT +S + E +YL+ A +++ K C EY
Sbjct: 56 IQILNSQKLQFKAEAVSKNLPVLTTSRRGRYSLIIIENYYKYLNMAQWNRQLLDKYCKEY 115
Query: 483 K 481
+
Sbjct: 116 R 116
>AB037941-1|BAB61756.1| 826|Caenorhabditis elegans
N-deactylase/N-sulfotransferase protein.
Length = 826
Score = 30.3 bits (65), Expect = 1.5
Identities = 15/61 (24%), Positives = 29/61 (47%)
Frame = -2
Query: 663 VRFLNERRDQLRAQQPDLGFAELTRQLASEWSRLPAEEKQQYLDAADQDKERYVKECAEY 484
++ LN ++ Q +A+ LT +S + E +YL+ A +++ K C EY
Sbjct: 68 IQILNSQKLQFKAEAVSKNLPVLTTSRRGRYSLIIIENYYKYLNMAQWNRQLLDKYCKEY 127
Query: 483 K 481
+
Sbjct: 128 R 128
>AL024499-5|CAC42318.1| 562|Caenorhabditis elegans Hypothetical
protein H38K22.5c protein.
Length = 562
Score = 29.5 bits (63), Expect = 2.5
Identities = 19/53 (35%), Positives = 29/53 (54%), Gaps = 4/53 (7%)
Frame = +3
Query: 516 YPD-LQHLSIVVFLQLEVYSTR*LTVWSIL-QNPN--LAVVLATDLFSHLKIL 662
YPD L S+++ E YST TVWS++ ++P L ++ D FS + L
Sbjct: 152 YPDNLPTTSVIIVYHNEAYSTLLRTVWSVIDRSPKELLKEIILVDDFSDREFL 204
>AL024499-4|CAC42317.1| 617|Caenorhabditis elegans Hypothetical
protein H38K22.5b protein.
Length = 617
Score = 29.5 bits (63), Expect = 2.5
Identities = 19/53 (35%), Positives = 29/53 (54%), Gaps = 4/53 (7%)
Frame = +3
Query: 516 YPD-LQHLSIVVFLQLEVYSTR*LTVWSIL-QNPN--LAVVLATDLFSHLKIL 662
YPD L S+++ E YST TVWS++ ++P L ++ D FS + L
Sbjct: 152 YPDNLPTTSVIIVYHNEAYSTLLRTVWSVIDRSPKELLKEIILVDDFSDREFL 204
>AL024499-3|CAA19707.1| 618|Caenorhabditis elegans Hypothetical
protein H38K22.5a protein.
Length = 618
Score = 29.5 bits (63), Expect = 2.5
Identities = 19/53 (35%), Positives = 29/53 (54%), Gaps = 4/53 (7%)
Frame = +3
Query: 516 YPD-LQHLSIVVFLQLEVYSTR*LTVWSIL-QNPN--LAVVLATDLFSHLKIL 662
YPD L S+++ E YST TVWS++ ++P L ++ D FS + L
Sbjct: 152 YPDNLPTTSVIIVYHNEAYSTLLRTVWSVIDRSPKELLKEIILVDDFSDREFL 204
>AF031840-1|AAC13676.1| 562|Caenorhabditis elegans GLY6c protein.
Length = 562
Score = 29.5 bits (63), Expect = 2.5
Identities = 19/53 (35%), Positives = 29/53 (54%), Gaps = 4/53 (7%)
Frame = +3
Query: 516 YPD-LQHLSIVVFLQLEVYSTR*LTVWSIL-QNPN--LAVVLATDLFSHLKIL 662
YPD L S+++ E YST TVWS++ ++P L ++ D FS + L
Sbjct: 152 YPDNLPTTSVIIVYHNEAYSTLLRTVWSVIDRSPKELLKEIILVDDFSDREFL 204
>AF031839-1|AAC13675.1| 617|Caenorhabditis elegans GLY6b protein.
Length = 617
Score = 29.5 bits (63), Expect = 2.5
Identities = 19/53 (35%), Positives = 29/53 (54%), Gaps = 4/53 (7%)
Frame = +3
Query: 516 YPD-LQHLSIVVFLQLEVYSTR*LTVWSIL-QNPN--LAVVLATDLFSHLKIL 662
YPD L S+++ E YST TVWS++ ++P L ++ D FS + L
Sbjct: 152 YPDNLPTTSVIIVYHNEAYSTLLRTVWSVIDRSPKELLKEIILVDDFSDREFL 204
>AF031838-1|AAC13674.1| 618|Caenorhabditis elegans GLY6a protein.
Length = 618
Score = 29.5 bits (63), Expect = 2.5
Identities = 19/53 (35%), Positives = 29/53 (54%), Gaps = 4/53 (7%)
Frame = +3
Query: 516 YPD-LQHLSIVVFLQLEVYSTR*LTVWSIL-QNPN--LAVVLATDLFSHLKIL 662
YPD L S+++ E YST TVWS++ ++P L ++ D FS + L
Sbjct: 152 YPDNLPTTSVIIVYHNEAYSTLLRTVWSVIDRSPKELLKEIILVDDFSDREFL 204
>AY130758-2|AAN61518.1| 18519|Caenorhabditis elegans 2MDa_2 protein
protein.
Length = 18519
Score = 28.7 bits (61), Expect = 4.4
Identities = 27/110 (24%), Positives = 50/110 (45%), Gaps = 4/110 (3%)
Frame = -2
Query: 717 KPKAARDTTAPRQPLTGYVRFLNERRDQLRAQQP---DLGFAELTRQLASEWSRLPAEEK 547
K K + T P T V ++ + Q + D A T+Q A E S+L A+EK
Sbjct: 13183 KQKEQDEPTKPAVSETQMVTEADKSKKQKETDEKLKLDAEIAAKTKQEADEKSKLDAQEK 13242
Query: 546 QQYLDAAD-QDKERYVKECAEYKRTNAYKEFTKQQSDLQDGSLSKKLRQV 400
+ + D KE+ + + + + A K+ + + L++ + +KK +V
Sbjct: 13243 IKKVSEDDAARKEKELNDKLKLESEIATKKASADKLKLEEQAQAKKAAEV 13292
>AY130758-1|AAN61517.1| 18534|Caenorhabditis elegans 2MDa_1 protein
protein.
Length = 18534
Score = 28.7 bits (61), Expect = 4.4
Identities = 27/110 (24%), Positives = 50/110 (45%), Gaps = 4/110 (3%)
Frame = -2
Query: 717 KPKAARDTTAPRQPLTGYVRFLNERRDQLRAQQP---DLGFAELTRQLASEWSRLPAEEK 547
K K + T P T V ++ + Q + D A T+Q A E S+L A+EK
Sbjct: 13183 KQKEQDEPTKPAVSETQMVTEADKSKKQKETDEKLKLDAEIAAKTKQEADEKSKLDAQEK 13242
Query: 546 QQYLDAAD-QDKERYVKECAEYKRTNAYKEFTKQQSDLQDGSLSKKLRQV 400
+ + D KE+ + + + + A K+ + + L++ + +KK +V
Sbjct: 13243 IKKVSEDDAARKEKELNDKLKLESEIATKKASADKLKLEEQAQAKKAAEV 13292
>AL132948-25|CAC51048.1| 438|Caenorhabditis elegans Hypothetical
protein Y39B6A.33 protein.
Length = 438
Score = 28.3 bits (60), Expect = 5.9
Identities = 23/86 (26%), Positives = 43/86 (50%), Gaps = 1/86 (1%)
Frame = -2
Query: 648 ERRDQLRAQQPDLGFAELTRQLASEWSRLPAEEKQQYLDAADQDKERYVKECAEYKRTNA 469
+RR + +A++ D T+QL E L EEKQ++ ++ + KE+ + + + ++
Sbjct: 304 KRRLEEKAKEQDSHNVYRTKQLHKE---LDEEEKQRHEESEVRKKEKLINKLTKRQQLGK 360
Query: 468 YKEFTKQQSDLQDGSLSKKLRQV-PQ 394
K + L L+ LRQ+ PQ
Sbjct: 361 GKFVDAEDPFLLQEELTGNLRQLKPQ 386
>Z68006-2|CAA91996.1| 560|Caenorhabditis elegans Hypothetical
protein K09C8.3 protein.
Length = 560
Score = 27.9 bits (59), Expect = 7.8
Identities = 16/56 (28%), Positives = 27/56 (48%), Gaps = 1/56 (1%)
Frame = -3
Query: 575 SGVDFQLKKNNNT*MLQI-RIKKDMLKNVRNTKEQMLIKSSQNNNLICKMVAYQRS 411
SG++ LK N +Q +I + N+RN +QM K Q N+ K +++
Sbjct: 173 SGINSDLKNALNGIQVQFGQISQQFANNIRNICQQMNCKQQQQKNVQMKQAILKQT 228
>Z67738-5|CAA91547.1| 484|Caenorhabditis elegans Hypothetical
protein W03G11.4 protein.
Length = 484
Score = 27.9 bits (59), Expect = 7.8
Identities = 22/89 (24%), Positives = 42/89 (47%)
Frame = -3
Query: 491 RNTKEQMLIKSSQNNNLICKMVAYQRSYGRFLK*TLQFLGEMEIPIFTDQFLQHNKLRES 312
R T EQML ++ +L+ + + R ++ ++ + P F +HNK
Sbjct: 342 RETPEQMLQRNKHYQHLMHRPQIFLRRTD-YMSCSIDD-EDFTFPYFESVDNEHNKRLTL 399
Query: 311 ELRQLRKANSDYEQQNAILHRHAEEVSGA 225
E RQL N D+E+ A++ ++++ A
Sbjct: 400 E-RQLNDDNVDHEEMGALIRTISQDLEEA 427
>Z67735-4|CAA91533.1| 484|Caenorhabditis elegans Hypothetical
protein W03G11.4 protein.
Length = 484
Score = 27.9 bits (59), Expect = 7.8
Identities = 22/89 (24%), Positives = 42/89 (47%)
Frame = -3
Query: 491 RNTKEQMLIKSSQNNNLICKMVAYQRSYGRFLK*TLQFLGEMEIPIFTDQFLQHNKLRES 312
R T EQML ++ +L+ + + R ++ ++ + P F +HNK
Sbjct: 342 RETPEQMLQRNKHYQHLMHRPQIFLRRTD-YMSCSIDD-EDFTFPYFESVDNEHNKRLTL 399
Query: 311 ELRQLRKANSDYEQQNAILHRHAEEVSGA 225
E RQL N D+E+ A++ ++++ A
Sbjct: 400 E-RQLNDDNVDHEEMGALIRTISQDLEEA 427
>U40944-1|AAA81718.3| 341|Caenorhabditis elegans Hypothetical
protein PDB1.1a protein.
Length = 341
Score = 27.9 bits (59), Expect = 7.8
Identities = 11/30 (36%), Positives = 18/30 (60%)
Frame = -3
Query: 305 RQLRKANSDYEQQNAILHRHAEEVSGATSK 216
R+ +K + YE QNA+L H E++ T +
Sbjct: 13 RKQKKVSQFYENQNALLEAHKEDMQTLTEE 42
>U10414-4|AAW30666.1| 641|Caenorhabditis elegans Neurofibromatosis
homolog protein1, isoform c protein.
Length = 641
Score = 27.9 bits (59), Expect = 7.8
Identities = 11/31 (35%), Positives = 19/31 (61%)
Frame = -3
Query: 320 RESELRQLRKANSDYEQQNAILHRHAEEVSG 228
+++ L +L K+ S+YE + I H EE+ G
Sbjct: 569 QQTTLMELEKSRSEYETRARIFKEHLEELRG 599
>U10414-3|AAK68385.1| 709|Caenorhabditis elegans Neurofibromatosis
homolog protein1, isoform b protein.
Length = 709
Score = 27.9 bits (59), Expect = 7.8
Identities = 11/31 (35%), Positives = 19/31 (61%)
Frame = -3
Query: 320 RESELRQLRKANSDYEQQNAILHRHAEEVSG 228
+++ L +L K+ S+YE + I H EE+ G
Sbjct: 569 QQTTLMELEKSRSEYETRARIFKEHLEELRG 599
>U10414-2|AAA19073.1| 654|Caenorhabditis elegans Neurofibromatosis
homolog protein1, isoform a protein.
Length = 654
Score = 27.9 bits (59), Expect = 7.8
Identities = 11/31 (35%), Positives = 19/31 (61%)
Frame = -3
Query: 320 RESELRQLRKANSDYEQQNAILHRHAEEVSG 228
+++ L +L K+ S+YE + I H EE+ G
Sbjct: 569 QQTTLMELEKSRSEYETRARIFKEHLEELRG 599
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,838,213
Number of Sequences: 27780
Number of extensions: 252338
Number of successful extensions: 1097
Number of sequences better than 10.0: 52
Number of HSP's better than 10.0 without gapping: 1042
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1094
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1697838058
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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