Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P06_pT_D13
(455 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC20F10.09 |lsm5||U6 snRNP-associated protein Lsm5|Schizosacch... 81 6e-17
SPCC285.12 |lsm7||U6 snRNP-associated protein Lsm7|Schizosacchar... 43 2e-05
SPBC11G11.06c |sme1||Sm snRNP core protein Sme1|Schizosaccharomy... 40 2e-04
SPBC4B4.05 |smg1||Sm snRNP core protein Smg1|Schizosaccharomyces... 37 0.001
SPBC30D10.06 |lsm4||U6 snRNP-associated protein Lsm4|Schizosacch... 36 0.002
SPAC26A3.08 |smb1|smb|Sm snRNP core protein Smb1|Schizosaccharom... 31 0.063
SPBC3D6.08c |||mRNA decapping complex subunit |Schizosaccharomyc... 31 0.084
SPAC1A6.05c |||triacylglycerol lipase|Schizosaccharomyces pombe|... 31 0.11
SPBC9B6.05c |lsm3||U6 snRNP-associated protein Lsm3|Schizosaccha... 31 0.11
SPAC2C4.03c |smd2|cwf9|Sm snRNP core protein Smd2|Schizosaccharo... 28 0.59
SPCC1620.01c |lsm2||U6 snRNP-associated protein core protein|Sch... 28 0.59
SPAPB24D3.01 ||SPAPB2C8.02|transcription factor |Schizosaccharom... 27 1.8
SPAC2G11.10c |||URM1 activating enzyme |Schizosaccharomyces pomb... 27 1.8
SPBC800.09 |sum2||G2/M transition checkpoint protein Sum2|Schizo... 26 2.4
SPCC830.03 |||AAA family ATPase Grc3 |Schizosaccharomyces pombe|... 25 7.3
SPBC428.20c |alp6|SPBC902.01c|gamma tubulin complex Spc98/GCP3 s... 25 7.3
SPBC354.03 |swd3||WD repeat protein Swd3|Schizosaccharomyces pom... 25 7.3
SPBC30B4.05 |kap109||karyopherin Kap109|Schizosaccharomyces pomb... 25 7.3
>SPBC20F10.09 |lsm5||U6 snRNP-associated protein
Lsm5|Schizosaccharomyces pombe|chr 2|||Manual
Length = 80
Score = 81.4 bits (192), Expect = 6e-17
Identities = 38/70 (54%), Positives = 52/70 (74%)
Frame = -2
Query: 226 VDKCIGSRIHIIMKNDKEMVGTLQGFDDFVNMLLDDVTEYESTPEGRKITKLDQXLLNGN 47
+DKCIGS + +IMK+++E GTL GFDD+VN++L DVTEY+ T G K + LLNGN
Sbjct: 11 IDKCIGSNLWVIMKSEREFAGTLVGFDDYVNIVLKDVTEYD-TVTG-VTEKHSEMLLNGN 68
Query: 46 NIAMLVPGGE 17
+ ML+PGG+
Sbjct: 69 GMCMLIPGGK 78
>SPCC285.12 |lsm7||U6 snRNP-associated protein
Lsm7|Schizosaccharomyces pombe|chr 3|||Manual
Length = 113
Score = 43.2 bits (97), Expect = 2e-05
Identities = 21/64 (32%), Positives = 34/64 (53%), Gaps = 4/64 (6%)
Frame = -2
Query: 205 RIHIIMKNDKEMVGTLQGFDDFVNMLLDDVTEYESTPEGRKIT----KLDQXLLNGNNIA 38
RI +++ G L+GFD +N++LDDV E PE K+T KL ++ G +
Sbjct: 35 RIQATFTGGRQITGILKGFDQLMNLVLDDVEEQLRNPEDGKLTGAIRKLGLVVVRGTTLV 94
Query: 37 MLVP 26
++ P
Sbjct: 95 LIAP 98
>SPBC11G11.06c |sme1||Sm snRNP core protein Sme1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 84
Score = 39.5 bits (88), Expect = 2e-04
Identities = 17/57 (29%), Positives = 36/57 (63%)
Frame = -2
Query: 202 IHIIMKNDKEMVGTLQGFDDFVNMLLDDVTEYESTPEGRKITKLDQXLLNGNNIAML 32
I + + D + G ++GFD+F+N++LDD + ++ R++ ++ LL G+NI ++
Sbjct: 28 IWLFEQTDIRLQGQIRGFDEFMNIVLDDAVQVDAKNNKRELGRI---LLKGDNITLI 81
>SPBC4B4.05 |smg1||Sm snRNP core protein Smg1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 77
Score = 37.1 bits (82), Expect = 0.001
Identities = 16/63 (25%), Positives = 37/63 (58%)
Frame = -2
Query: 220 KCIGSRIHIIMKNDKEMVGTLQGFDDFVNMLLDDVTEYESTPEGRKITKLDQXLLNGNNI 41
K + ++ + + +++ G L+G+D F+N++L+D E +G K+ K+ + GN++
Sbjct: 11 KYLDRQVFVQLNGSRKVYGVLRGYDIFLNIVLED--SIEEKVDGEKV-KIGSVAIRGNSV 67
Query: 40 AML 32
M+
Sbjct: 68 IMI 70
>SPBC30D10.06 |lsm4||U6 snRNP-associated protein
Lsm4|Schizosaccharomyces pombe|chr 2|||Manual
Length = 121
Score = 36.3 bits (80), Expect = 0.002
Identities = 19/60 (31%), Positives = 33/60 (55%)
Frame = -2
Query: 211 GSRIHIIMKNDKEMVGTLQGFDDFVNMLLDDVTEYESTPEGRKITKLDQXLLNGNNIAML 32
G I + +KN + G L+ D+++N+ L +V + P+G K +L + + GNNI L
Sbjct: 12 GRPILVELKNGETFNGHLENCDNYMNLTLREVIR--TMPDGDKFFRLPECYIRGNNIKYL 69
>SPAC26A3.08 |smb1|smb|Sm snRNP core protein
Smb1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 147
Score = 31.5 bits (68), Expect = 0.063
Identities = 12/32 (37%), Positives = 20/32 (62%)
Frame = -2
Query: 202 IHIIMKNDKEMVGTLQGFDDFVNMLLDDVTEY 107
+++ K+ + VG L FD F+N++L D EY
Sbjct: 14 LNVTTKDGRTFVGQLLAFDGFMNLVLSDCQEY 45
>SPBC3D6.08c |||mRNA decapping complex subunit |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 140
Score = 31.1 bits (67), Expect = 0.084
Identities = 9/35 (25%), Positives = 23/35 (65%)
Frame = -2
Query: 214 IGSRIHIIMKNDKEMVGTLQGFDDFVNMLLDDVTE 110
+ ++ +++++ K+++G L+ FD F N++L E
Sbjct: 20 VDRKVIVVLRDGKKLIGILRSFDQFANLMLQYTIE 54
>SPAC1A6.05c |||triacylglycerol lipase|Schizosaccharomyces pombe|chr
1|||Manual
Length = 483
Score = 30.7 bits (66), Expect = 0.11
Identities = 17/52 (32%), Positives = 28/52 (53%), Gaps = 3/52 (5%)
Frame = -2
Query: 166 GTLQGFDDFVNMLLDDVTEYESTPE---GRKITKLDQXLLNGNNIAMLVPGG 20
GT + D+F+ +L +T E TP+ KIT+ + L N A+++ GG
Sbjct: 95 GTKKLIDEFIQEVLMCLTYLEETPDLSLDEKITEFSRLKLTTGNTALILSGG 146
>SPBC9B6.05c |lsm3||U6 snRNP-associated protein
Lsm3|Schizosaccharomyces pombe|chr 2|||Manual
Length = 93
Score = 30.7 bits (66), Expect = 0.11
Identities = 10/31 (32%), Positives = 21/31 (67%)
Frame = -2
Query: 202 IHIIMKNDKEMVGTLQGFDDFVNMLLDDVTE 110
+++ ++ D+E+ G L +D+ +NM+L D E
Sbjct: 22 VYVKLRGDRELNGRLHAYDEHLNMVLGDAEE 52
>SPAC2C4.03c |smd2|cwf9|Sm snRNP core protein
Smd2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 115
Score = 28.3 bits (60), Expect = 0.59
Identities = 19/69 (27%), Positives = 39/69 (56%), Gaps = 10/69 (14%)
Frame = -2
Query: 205 RIHIIMKNDKEMVGTLQGFDDFVNMLLDDV----TEYESTPEGRK---ITK---LDQXLL 56
++ I +N+K+++ ++ FD NM+L++V TE + T G+K I K + + L
Sbjct: 42 QVLINCRNNKKLLARVKAFDRHSNMVLENVKEMWTEKKRTASGKKGKAINKDRFISKMFL 101
Query: 55 NGNNIAMLV 29
G+ + ++V
Sbjct: 102 RGDGVVLVV 110
>SPCC1620.01c |lsm2||U6 snRNP-associated protein core
protein|Schizosaccharomyces pombe|chr 3|||Manual
Length = 96
Score = 28.3 bits (60), Expect = 0.59
Identities = 10/39 (25%), Positives = 25/39 (64%)
Frame = -2
Query: 214 IGSRIHIIMKNDKEMVGTLQGFDDFVNMLLDDVTEYEST 98
I + + + +KND + G L+ D F+N+ L++++ +++
Sbjct: 11 IDTEVTVELKNDMSIRGILKSVDQFLNVKLENISVVDAS 49
>SPAPB24D3.01 ||SPAPB2C8.02|transcription factor
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 594
Score = 26.6 bits (56), Expect = 1.8
Identities = 11/28 (39%), Positives = 16/28 (57%)
Frame = -1
Query: 335 QVDCHYSK*IPRNLRTQKKNDAKFITES 252
Q +CHYSK + R+ KK + + ES
Sbjct: 35 QEECHYSKRLKRSYSATKKKNGNPVLES 62
>SPAC2G11.10c |||URM1 activating enzyme |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 401
Score = 26.6 bits (56), Expect = 1.8
Identities = 13/31 (41%), Positives = 17/31 (54%)
Frame = +2
Query: 275 HFFSAYEDFVEFIYCNDNQLVDYLIS*SIVL 367
+ FS E + + C DNQ YLIS + VL
Sbjct: 126 NLFSIIEQYDVVLDCTDNQYTRYLISDTCVL 156
>SPBC800.09 |sum2||G2/M transition checkpoint protein
Sum2|Schizosaccharomyces pombe|chr 2|||Manual
Length = 426
Score = 26.2 bits (55), Expect = 2.4
Identities = 18/44 (40%), Positives = 23/44 (52%)
Frame = -2
Query: 214 IGSRIHIIMKNDKEMVGTLQGFDDFVNMLLDDVTEYESTPEGRK 83
IGSRI +I K+D VG LQ + + L + T EGRK
Sbjct: 5 IGSRISLISKSDIRYVGILQDINSQDSTLALKHVRWCGT-EGRK 47
>SPCC830.03 |||AAA family ATPase Grc3 |Schizosaccharomyces pombe|chr
3|||Manual
Length = 736
Score = 24.6 bits (51), Expect = 7.3
Identities = 13/46 (28%), Positives = 21/46 (45%)
Frame = -2
Query: 193 IMKNDKEMVGTLQGFDDFVNMLLDDVTEYESTPEGRKITKLDQXLL 56
I ++ + M L D+F LL+ +Y P K+T D +L
Sbjct: 494 IYQHKEYMPDFLSSRDEFQLTLLESTWQYLPDPNVNKVTSADNRML 539
>SPBC428.20c |alp6|SPBC902.01c|gamma tubulin complex Spc98/GCP3
subunit Alp6|Schizosaccharomyces pombe|chr 2|||Manual
Length = 821
Score = 24.6 bits (51), Expect = 7.3
Identities = 10/27 (37%), Positives = 17/27 (62%)
Frame = -2
Query: 115 TEYESTPEGRKITKLDQXLLNGNNIAM 35
T Y+ PE +IT D+ L N ++I++
Sbjct: 141 TRYDQVPENPQITDWDEGLENESSISI 167
>SPBC354.03 |swd3||WD repeat protein Swd3|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 380
Score = 24.6 bits (51), Expect = 7.3
Identities = 9/22 (40%), Positives = 13/22 (59%)
Frame = -1
Query: 329 DCHYSK*IPRNLRTQKKNDAKF 264
DC+ SK IP+N ND+ +
Sbjct: 274 DCYSSKNIPKNTEALPNNDSSY 295
>SPBC30B4.05 |kap109||karyopherin Kap109|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 967
Score = 24.6 bits (51), Expect = 7.3
Identities = 13/38 (34%), Positives = 22/38 (57%), Gaps = 2/38 (5%)
Frame = -2
Query: 214 IGSRIHIIMKNDKEMVGTLQG--FDDFVNMLLDDVTEY 107
IG+ I + K+ + V L+ F N+L++DVTE+
Sbjct: 616 IGALIRSLSKSGPQTVSQLENALLPVFQNVLIEDVTEF 653
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,880,298
Number of Sequences: 5004
Number of extensions: 35964
Number of successful extensions: 80
Number of sequences better than 10.0: 18
Number of HSP's better than 10.0 without gapping: 77
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 79
length of database: 2,362,478
effective HSP length: 67
effective length of database: 2,027,210
effective search space used: 170285640
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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