Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P06_pT_D13
         (455 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z81071-3|CAB03013.1|   91|Caenorhabditis elegans Hypothetical pr...   118   3e-27
AF303264-1|AAG50222.1|   77|Caenorhabditis elegans SM protein G ...    40   6e-04
AC024201-5|AAF36015.1|   77|Caenorhabditis elegans Small nuclear...    40   6e-04
AL132865-8|CAB60606.2|  102|Caenorhabditis elegans Hypothetical ...    40   0.001
Z98866-12|CAB11551.1|   90|Caenorhabditis elegans Hypothetical p...    37   0.006
Z69385-6|CAA93428.1|  104|Caenorhabditis elegans Hypothetical pr...    37   0.006
Z81118-7|CAB03328.3|   97|Caenorhabditis elegans Hypothetical pr...    34   0.056
Z69302-4|CAA93263.1|  125|Caenorhabditis elegans Hypothetical pr...    33   0.075
U28738-8|AAA68313.1|  126|Caenorhabditis elegans Small nuclear r...    32   0.17 
AF125954-2|AAK68175.1|  193|Caenorhabditis elegans Hypothetical ...    32   0.17 
Z78012-3|CAB01413.1|  118|Caenorhabditis elegans Hypothetical pr...    31   0.40 
Z68161-7|CAD36488.1| 1130|Caenorhabditis elegans Hypothetical pr...    27   4.9  
Z68120-4|CAA92202.1|  328|Caenorhabditis elegans Hypothetical pr...    27   6.5  
U42436-7|AAO61428.2|  223|Caenorhabditis elegans Hypothetical pr...    27   6.5  
Z49967-10|CAA90254.1|  553|Caenorhabditis elegans Hypothetical p...    27   8.6  
AC006769-3|AAX22281.1|  196|Caenorhabditis elegans Hypothetical ...    27   8.6  

>Z81071-3|CAB03013.1|   91|Caenorhabditis elegans Hypothetical
           protein F28F8.3 protein.
          Length = 91

 Score =  118 bits (283), Expect = 3e-27
 Identities = 51/72 (70%), Positives = 64/72 (88%)
 Frame = -2

Query: 226 VDKCIGSRIHIIMKNDKEMVGTLQGFDDFVNMLLDDVTEYESTPEGRKITKLDQXLLNGN 47
           +DKCIGS+I +IMKNDKE+VGTL GFDD+VNM+L+DV EYE+T +G+++TKLD  LLNGN
Sbjct: 18  IDKCIGSKIWVIMKNDKEIVGTLTGFDDYVNMVLEDVVEYENTADGKRMTKLDTILLNGN 77

Query: 46  NIAMLVPGGEMP 11
           +I MLVPGGE P
Sbjct: 78  HITMLVPGGEGP 89


>AF303264-1|AAG50222.1|   77|Caenorhabditis elegans SM protein G
           protein.
          Length = 77

 Score = 40.3 bits (90), Expect = 6e-04
 Identities = 17/65 (26%), Positives = 38/65 (58%)
 Frame = -2

Query: 220 KCIGSRIHIIMKNDKEMVGTLQGFDDFVNMLLDDVTEYESTPEGRKITKLDQXLLNGNNI 41
           K +   + + +  ++ + G L+GFD F+NM++D+  EY+   +G  +  L   ++ GN++
Sbjct: 11  KYMDKEMDLKLNGNRRVSGILRGFDPFMNMVIDEAVEYQK--DGGSV-NLGMTVIRGNSV 67

Query: 40  AMLVP 26
            ++ P
Sbjct: 68  VIMEP 72


>AC024201-5|AAF36015.1|   77|Caenorhabditis elegans Small nuclear
           ribonucleoproteinprotein 7 protein.
          Length = 77

 Score = 40.3 bits (90), Expect = 6e-04
 Identities = 17/65 (26%), Positives = 38/65 (58%)
 Frame = -2

Query: 220 KCIGSRIHIIMKNDKEMVGTLQGFDDFVNMLLDDVTEYESTPEGRKITKLDQXLLNGNNI 41
           K +   + + +  ++ + G L+GFD F+NM++D+  EY+   +G  +  L   ++ GN++
Sbjct: 11  KYMDKEMDLKLNGNRRVSGILRGFDPFMNMVIDEAVEYQK--DGGSV-NLGMTVIRGNSV 67

Query: 40  AMLVP 26
            ++ P
Sbjct: 68  VIMEP 72


>AL132865-8|CAB60606.2|  102|Caenorhabditis elegans Hypothetical
           protein Y62E10A.12 protein.
          Length = 102

 Score = 39.5 bits (88), Expect = 0.001
 Identities = 16/41 (39%), Positives = 28/41 (68%)
 Frame = -2

Query: 214 IGSRIHIIMKNDKEMVGTLQGFDDFVNMLLDDVTEYESTPE 92
           +  R+++ M+ND+E+ G L+ FD  +NM+L +V E  +T E
Sbjct: 25  LDERVYVKMRNDRELRGRLRAFDQHLNMVLSEVEETITTRE 65


>Z98866-12|CAB11551.1|   90|Caenorhabditis elegans Hypothetical
           protein Y49E10.15 protein.
          Length = 90

 Score = 37.1 bits (82), Expect = 0.006
 Identities = 19/61 (31%), Positives = 35/61 (57%), Gaps = 2/61 (3%)
 Frame = -2

Query: 208 SRIHIIMKND--KEMVGTLQGFDDFVNMLLDDVTEYESTPEGRKITKLDQXLLNGNNIAM 35
           +R+ I +  D    + G + GFD+F+N++ D+  E     +GR   K+ + LL G+NI +
Sbjct: 25  TRVQIWLYEDVTHRLEGYIIGFDEFMNVVFDEAEEVNMKTKGR--NKIGRILLKGDNITL 82

Query: 34  L 32
           +
Sbjct: 83  I 83


>Z69385-6|CAA93428.1|  104|Caenorhabditis elegans Hypothetical
           protein ZK593.7 protein.
          Length = 104

 Score = 37.1 bits (82), Expect = 0.006
 Identities = 15/45 (33%), Positives = 24/45 (53%)
 Frame = -2

Query: 214 IGSRIHIIMKNDKEMVGTLQGFDDFVNMLLDDVTEYESTPEGRKI 80
           +   I +  +  +E  G L+GFD  +NM+LDD  EY   P+   +
Sbjct: 20  LDKEIRVKFQGGREASGVLRGFDQLLNMVLDDCREYLRDPQNPSV 64


>Z81118-7|CAB03328.3|   97|Caenorhabditis elegans Hypothetical
           protein T10G3.6 protein.
          Length = 97

 Score = 33.9 bits (74), Expect = 0.056
 Identities = 13/34 (38%), Positives = 21/34 (61%)
 Frame = -2

Query: 214 IGSRIHIIMKNDKEMVGTLQGFDDFVNMLLDDVT 113
           +G  + + +KND  + GTL   D ++NM L D+T
Sbjct: 11  VGKDVVVELKNDLSICGTLHSVDQYLNMKLTDIT 44


>Z69302-4|CAA93263.1|  125|Caenorhabditis elegans Hypothetical
           protein F40F8.9 protein.
          Length = 125

 Score = 33.5 bits (73), Expect = 0.075
 Identities = 13/60 (21%), Positives = 33/60 (55%)
 Frame = -2

Query: 214 IGSRIHIIMKNDKEMVGTLQGFDDFVNMLLDDVTEYESTPEGRKITKLDQXLLNGNNIAM 35
           +  ++ +++++ ++++G L+  D F N++L+DV E     +    T     L+ G N+ +
Sbjct: 18  LDKKLLVVLRDGRKLIGFLRSIDQFANLILEDVVERTFVEKYFCETGQGFMLIRGENVEL 77


>U28738-8|AAA68313.1|  126|Caenorhabditis elegans Small nuclear
           ribonucleoproteinprotein 3 protein.
          Length = 126

 Score = 32.3 bits (70), Expect = 0.17
 Identities = 18/58 (31%), Positives = 32/58 (55%)
 Frame = -2

Query: 202 IHIIMKNDKEMVGTLQGFDDFVNMLLDDVTEYESTPEGRKITKLDQXLLNGNNIAMLV 29
           ++I +KN  ++ GT+ G D  +N  L  V+    T + ++  KLD   + GNNI  ++
Sbjct: 15  VNIELKNGTQVSGTIMGVDVAMNTHLRAVS---MTVKNKEPVKLDTLSIRGNNIRYII 69


>AF125954-2|AAK68175.1|  193|Caenorhabditis elegans Hypothetical
           protein C13B7.6 protein.
          Length = 193

 Score = 32.3 bits (70), Expect = 0.17
 Identities = 20/49 (40%), Positives = 27/49 (55%)
 Frame = -3

Query: 306 STKSSYAEKK*RKVHYRIQTRYCLWNLLTNALVPAFIS**KTTKKWLEL 160
           S  +S  EK  +KVH +I  R C   +L  +LVP  I   K+ KK L+L
Sbjct: 125 SVTNSAPEKIQKKVHVKIMPRKCAPQILRRSLVPPPILTPKSAKKKLKL 173


>Z78012-3|CAB01413.1|  118|Caenorhabditis elegans Hypothetical
           protein C52E4.3 protein.
          Length = 118

 Score = 31.1 bits (67), Expect = 0.40
 Identities = 16/48 (33%), Positives = 30/48 (62%), Gaps = 4/48 (8%)
 Frame = -2

Query: 205 RIHIIMKNDKEMVGTLQGFDDFVNMLLDDV----TEYESTPEGRKITK 74
           ++ I  +N+K+++G ++ FD   NM+L++V    TE   T +G+K  K
Sbjct: 41  QVLINCRNNKKLLGRVKAFDRHCNMVLENVKEMWTEVPKTGKGKKKAK 88


>Z68161-7|CAD36488.1| 1130|Caenorhabditis elegans Hypothetical protein
            F20C5.2b protein.
          Length = 1130

 Score = 27.5 bits (58), Expect = 4.9
 Identities = 17/49 (34%), Positives = 25/49 (51%), Gaps = 2/49 (4%)
 Frame = +3

Query: 132  MFTKSSNPCRVPTISLSF--FIMI*MREPMHLSTSSRGSNVFGFGNELC 272
            + TKS +  R   I + F  F++        LST  RG+ V+G G +LC
Sbjct: 858  LMTKSLHAPRKFGIFMKFQKFLVDFQNYDRSLSTPQRGATVYGSGEQLC 906


>Z68120-4|CAA92202.1|  328|Caenorhabditis elegans Hypothetical
           protein T24C2.4 protein.
          Length = 328

 Score = 27.1 bits (57), Expect = 6.5
 Identities = 13/26 (50%), Positives = 16/26 (61%), Gaps = 1/26 (3%)
 Frame = -2

Query: 163 TLQGFDDFVNMLLD-DVTEYESTPEG 89
           TL GFDD+V ++LD    EY    EG
Sbjct: 69  TLNGFDDYVKLVLDGKCLEYTDMYEG 94


>U42436-7|AAO61428.2|  223|Caenorhabditis elegans Hypothetical
           protein C49H3.4 protein.
          Length = 223

 Score = 27.1 bits (57), Expect = 6.5
 Identities = 19/65 (29%), Positives = 31/65 (47%)
 Frame = -2

Query: 220 KCIGSRIHIIMKNDKEMVGTLQGFDDFVNMLLDDVTEYESTPEGRKITKLDQXLLNGNNI 41
           K I  R+   ++ D+   G    FD+  N+++ DVT  E+   GRK  K      N   +
Sbjct: 121 KRIEVRVRSAIRIDRIFEGIPTTFDEHFNLMMKDVT--ETVLHGRKAQK---EFTNRKEM 175

Query: 40  AMLVP 26
            +L+P
Sbjct: 176 QLLLP 180


>Z49967-10|CAA90254.1|  553|Caenorhabditis elegans Hypothetical
           protein F54C9.8 protein.
          Length = 553

 Score = 26.6 bits (56), Expect = 8.6
 Identities = 18/66 (27%), Positives = 30/66 (45%)
 Frame = +3

Query: 69  SNLVIFRPXXXXXXXXXXXXNMFTKSSNPCRVPTISLSFFIMI*MREPMHLSTSSRGSNV 248
           SN+ +F              + F KSS+PCR+  ++ S       + P++L+ +  G   
Sbjct: 41  SNIPLFNFMGTGNQRFQYSPHPFAKSSDPCRLAALTPST-----PKGPLNLTPADFGLAD 95

Query: 249 FGFGNE 266
           F  GNE
Sbjct: 96  FSVGNE 101


>AC006769-3|AAX22281.1|  196|Caenorhabditis elegans Hypothetical
           protein Y45G12C.16 protein.
          Length = 196

 Score = 26.6 bits (56), Expect = 8.6
 Identities = 20/52 (38%), Positives = 27/52 (51%), Gaps = 3/52 (5%)
 Frame = -3

Query: 306 STKSSYAEKK*RKVHYRIQTRYCLW---NLLTNALVPAFIS**KTTKKWLEL 160
           S  +S  EK  +KVH +I  R C      +L  +LVP  I   K+ KK L+L
Sbjct: 125 SVTNSAPEKIQKKVHVKIMPRKCKTGAPQILRRSLVPPPILTPKSAKKKLKL 176


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,445,040
Number of Sequences: 27780
Number of extensions: 202522
Number of successful extensions: 448
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 433
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 447
length of database: 12,740,198
effective HSP length: 75
effective length of database: 10,656,698
effective search space used: 809909048
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)