Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P06_pT_D12
         (926 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC2G11.06 |vps4||AAA family ATPase Vps4|Schizosaccharomyces po...    39   9e-04
SPBC32H8.13c |mok12||alpha-1,3-glucan synthase Mok12|Schizosacch...    28   2.1  
SPBC119.01 |rpn3|SPBPJ4664.07|19S proteasome regulatory subunit ...    27   3.8  

>SPAC2G11.06 |vps4||AAA family ATPase Vps4|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 432

 Score = 39.1 bits (87), Expect = 9e-04
 Identities = 14/26 (53%), Positives = 19/26 (73%)
 Frame = -2

Query: 925 TPCSPGDPGAIEMTWIDVPSDKLGEP 848
           TPCSPGDP A E +W++V  + + EP
Sbjct: 370 TPCSPGDPDAFESSWLEVNPEDIMEP 395



 Score = 31.5 bits (68), Expect = 0.17
 Identities = 14/35 (40%), Positives = 21/35 (60%)
 Frame = -1

Query: 842 TMSDMLRSLAVSKPTVNDDDMVKLRKFMEDFGQEG 738
           T+ D   ++   KPT+N  D+ K  +F +DFG EG
Sbjct: 398 TVRDFYSAVRKVKPTLNAGDIEKHTQFTKDFGAEG 432


>SPBC32H8.13c |mok12||alpha-1,3-glucan synthase
            Mok12|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 2352

 Score = 27.9 bits (59), Expect = 2.1
 Identities = 10/22 (45%), Positives = 16/22 (72%)
 Frame = -1

Query: 323  HWLLK*CLLHNIERIFEV*SLW 258
            HW+L+ CL+H I++I+    LW
Sbjct: 2059 HWILRACLVHGIQQIWSA-ILW 2079


>SPBC119.01 |rpn3|SPBPJ4664.07|19S proteasome regulatory subunit
           Rpn3|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 497

 Score = 27.1 bits (57), Expect = 3.8
 Identities = 14/45 (31%), Positives = 22/45 (48%)
 Frame = +2

Query: 347 QVFIIYLQIYKYLQFNIDKQLTIL*SFLNFYIYNINNAKILFYYF 481
           Q  ++ L +  Y+QFN+  Q   L S  +F     NN  I + Y+
Sbjct: 209 QAMVLTLLLRNYIQFNLYDQADRLVSKTSFLTNASNNLAIRYQYY 253


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,367,503
Number of Sequences: 5004
Number of extensions: 63799
Number of successful extensions: 161
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 156
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 161
length of database: 2,362,478
effective HSP length: 73
effective length of database: 1,997,186
effective search space used: 469338710
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)