Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P06_pT_D12
         (926 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

02_01_0450 + 3234378-3234834,3235118-3235223,3235722-3235920,323...    30   2.3  
01_01_0268 - 2214923-2215048,2215131-2215286,2215371-2215469,221...    29   5.2  
04_03_0099 + 11185832-11185893,11186744-11186912,11186940-111870...    28   9.2  

>02_01_0450 +
           3234378-3234834,3235118-3235223,3235722-3235920,
           3236119-3236187,3236299-3236373,3236484-3236582,
           3236694-3236864,3237394-3237519
          Length = 433

 Score = 30.3 bits (65), Expect = 2.3
 Identities = 13/35 (37%), Positives = 22/35 (62%)
 Frame = -1

Query: 842 TMSDMLRSLAVSKPTVNDDDMVKLRKFMEDFGQEG 738
           T +D+ + LA  K TV++ D+    +F  +FG+EG
Sbjct: 399 TRTDLDKVLARQKATVSEKDLEVYTRFTREFGEEG 433


>01_01_0268 -
           2214923-2215048,2215131-2215286,2215371-2215469,
           2215557-2215631,2215732-2215800,2216515-2216713,
           2220162-2220267,2221117-2221588
          Length = 433

 Score = 29.1 bits (62), Expect = 5.2
 Identities = 12/33 (36%), Positives = 21/33 (63%)
 Frame = -1

Query: 836 SDMLRSLAVSKPTVNDDDMVKLRKFMEDFGQEG 738
           +D  + LA  +PTV+  D+    +F ++FG+EG
Sbjct: 401 TDFEKVLARQRPTVSKKDLEVHERFTKEFGEEG 433


>04_03_0099 +
           11185832-11185893,11186744-11186912,11186940-11187075,
           11188152-11188205,11188280-11188578
          Length = 239

 Score = 28.3 bits (60), Expect = 9.2
 Identities = 10/28 (35%), Positives = 18/28 (64%)
 Frame = +1

Query: 196 ICEHFLNFANLITLSCHKNKIHKDQTSK 279
           +C+ + +FA+L+ L+CH  K  +D   K
Sbjct: 46  VCQSYSSFAHLLQLACHVEKPIEDVNKK 73


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,406,218
Number of Sequences: 37544
Number of extensions: 322772
Number of successful extensions: 674
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 664
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 674
length of database: 14,793,348
effective HSP length: 82
effective length of database: 11,714,740
effective search space used: 2647531240
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)