Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P06_pT_D12
(926 letters)
Database: human
237,096 sequences; 76,859,062 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
BC039574-1|AAH39574.1| 444|Homo sapiens vacuolar protein sortin... 58 5e-08
AY232629-1|AAP59551.1| 444|Homo sapiens cell migration-inducing... 58 5e-08
AF282904-1|AAG01471.1| 444|Homo sapiens vacuolar protein sortin... 58 5e-08
AF195514-1|AAG33022.1| 444|Homo sapiens VPS4-2 ATPase protein. 58 5e-08
BC035121-1|AAH35121.1| 70|Homo sapiens VPS4A protein protein. 58 6e-08
BC047932-1|AAH47932.1| 437|Homo sapiens vacuolar protein sortin... 57 1e-07
AL133634-1|CAB63758.1| 266|Homo sapiens hypothetical protein pr... 57 1e-07
AK000200-1|BAA91005.1| 240|Homo sapiens protein ( Homo sapiens ... 57 1e-07
AF282903-1|AAG01470.1| 437|Homo sapiens vacuolar protein sortin... 57 1e-07
AF255952-1|AAK52408.1| 437|Homo sapiens vacuolar protein sortin... 57 1e-07
AF159063-1|AAD49227.1| 437|Homo sapiens SKD1-homolog protein. 57 1e-07
AF155740-1|AAD42971.1| 432|Homo sapiens vacuolar sorting protei... 57 1e-07
AF132747-1|AAL75948.1| 437|Homo sapiens SKD2 protein protein. 57 1e-07
AF112215-1|AAF17203.1| 437|Homo sapiens SKD1 protein protein. 57 1e-07
>BC039574-1|AAH39574.1| 444|Homo sapiens vacuolar protein sorting 4
homolog B (S. cerevisiae) protein.
Length = 444
Score = 58.0 bits (134), Expect = 5e-08
Identities = 24/28 (85%), Positives = 25/28 (89%)
Frame = -2
Query: 925 TPCSPGDPGAIEMTWIDVPSDKLGEPPV 842
TPCSPGDPGAIEMTW+DVP DKL EP V
Sbjct: 382 TPCSPGDPGAIEMTWMDVPGDKLLEPVV 409
Score = 58.0 bits (134), Expect = 5e-08
Identities = 25/35 (71%), Positives = 32/35 (91%)
Frame = -1
Query: 842 TMSDMLRSLAVSKPTVNDDDMVKLRKFMEDFGQEG 738
+MSDMLRSL+ +KPTVN+ D++KL+KF EDFGQEG
Sbjct: 410 SMSDMLRSLSNTKPTVNEHDLLKLKKFTEDFGQEG 444
>AY232629-1|AAP59551.1| 444|Homo sapiens cell migration-inducing 1
protein.
Length = 444
Score = 58.0 bits (134), Expect = 5e-08
Identities = 24/28 (85%), Positives = 25/28 (89%)
Frame = -2
Query: 925 TPCSPGDPGAIEMTWIDVPSDKLGEPPV 842
TPCSPGDPGAIEMTW+DVP DKL EP V
Sbjct: 382 TPCSPGDPGAIEMTWMDVPGDKLLEPVV 409
Score = 58.0 bits (134), Expect = 5e-08
Identities = 25/35 (71%), Positives = 32/35 (91%)
Frame = -1
Query: 842 TMSDMLRSLAVSKPTVNDDDMVKLRKFMEDFGQEG 738
+MSDMLRSL+ +KPTVN+ D++KL+KF EDFGQEG
Sbjct: 410 SMSDMLRSLSNTKPTVNEHDLLKLKKFTEDFGQEG 444
>AF282904-1|AAG01471.1| 444|Homo sapiens vacuolar protein sorting
factor 4B protein.
Length = 444
Score = 58.0 bits (134), Expect = 5e-08
Identities = 24/28 (85%), Positives = 25/28 (89%)
Frame = -2
Query: 925 TPCSPGDPGAIEMTWIDVPSDKLGEPPV 842
TPCSPGDPGAIEMTW+DVP DKL EP V
Sbjct: 382 TPCSPGDPGAIEMTWMDVPGDKLLEPVV 409
Score = 58.0 bits (134), Expect = 5e-08
Identities = 25/35 (71%), Positives = 32/35 (91%)
Frame = -1
Query: 842 TMSDMLRSLAVSKPTVNDDDMVKLRKFMEDFGQEG 738
+MSDMLRSL+ +KPTVN+ D++KL+KF EDFGQEG
Sbjct: 410 SMSDMLRSLSNTKPTVNEHDLLKLKKFTEDFGQEG 444
>AF195514-1|AAG33022.1| 444|Homo sapiens VPS4-2 ATPase protein.
Length = 444
Score = 58.0 bits (134), Expect = 5e-08
Identities = 24/28 (85%), Positives = 25/28 (89%)
Frame = -2
Query: 925 TPCSPGDPGAIEMTWIDVPSDKLGEPPV 842
TPCSPGDPGAIEMTW+DVP DKL EP V
Sbjct: 382 TPCSPGDPGAIEMTWMDVPGDKLLEPVV 409
Score = 58.0 bits (134), Expect = 5e-08
Identities = 25/35 (71%), Positives = 32/35 (91%)
Frame = -1
Query: 842 TMSDMLRSLAVSKPTVNDDDMVKLRKFMEDFGQEG 738
+MSDMLRSL+ +KPTVN+ D++KL+KF EDFGQEG
Sbjct: 410 SMSDMLRSLSNTKPTVNEHDLLKLKKFTEDFGQEG 444
>BC035121-1|AAH35121.1| 70|Homo sapiens VPS4A protein protein.
Length = 70
Score = 57.6 bits (133), Expect = 6e-08
Identities = 23/28 (82%), Positives = 25/28 (89%)
Frame = -2
Query: 925 TPCSPGDPGAIEMTWIDVPSDKLGEPPV 842
TPCSPGDPGA+EMTW+DVP DKL EP V
Sbjct: 8 TPCSPGDPGAVEMTWMDVPGDKLLEPVV 35
Score = 56.4 bits (130), Expect = 1e-07
Identities = 24/33 (72%), Positives = 30/33 (90%)
Frame = -1
Query: 839 MSDMLRSLAVSKPTVNDDDMVKLRKFMEDFGQE 741
MSDMLRSLA ++PTVN DD++K++KF EDFGQE
Sbjct: 37 MSDMLRSLATTRPTVNADDLLKVKKFSEDFGQE 69
>BC047932-1|AAH47932.1| 437|Homo sapiens vacuolar protein sorting 4
homolog A (S. cerevisiae) protein.
Length = 437
Score = 56.8 bits (131), Expect = 1e-07
Identities = 23/28 (82%), Positives = 25/28 (89%)
Frame = -2
Query: 925 TPCSPGDPGAIEMTWIDVPSDKLGEPPV 842
TPCSPGDPGA+EMTW+DVP DKL EP V
Sbjct: 375 TPCSPGDPGAMEMTWMDVPGDKLLEPVV 402
Score = 56.4 bits (130), Expect = 1e-07
Identities = 24/33 (72%), Positives = 30/33 (90%)
Frame = -1
Query: 839 MSDMLRSLAVSKPTVNDDDMVKLRKFMEDFGQE 741
MSDMLRSLA ++PTVN DD++K++KF EDFGQE
Sbjct: 404 MSDMLRSLATTRPTVNADDLLKVKKFSEDFGQE 436
>AL133634-1|CAB63758.1| 266|Homo sapiens hypothetical protein
protein.
Length = 266
Score = 56.8 bits (131), Expect = 1e-07
Identities = 23/28 (82%), Positives = 25/28 (89%)
Frame = -2
Query: 925 TPCSPGDPGAIEMTWIDVPSDKLGEPPV 842
TPCSPGDPGA+EMTW+DVP DKL EP V
Sbjct: 204 TPCSPGDPGAMEMTWMDVPGDKLLEPVV 231
Score = 56.4 bits (130), Expect = 1e-07
Identities = 24/33 (72%), Positives = 30/33 (90%)
Frame = -1
Query: 839 MSDMLRSLAVSKPTVNDDDMVKLRKFMEDFGQE 741
MSDMLRSLA ++PTVN DD++K++KF EDFGQE
Sbjct: 233 MSDMLRSLATTRPTVNADDLLKVKKFSEDFGQE 265
>AK000200-1|BAA91005.1| 240|Homo sapiens protein ( Homo sapiens
cDNA FLJ20193 fis, clone COLF0795. ).
Length = 240
Score = 56.8 bits (131), Expect = 1e-07
Identities = 23/28 (82%), Positives = 25/28 (89%)
Frame = -2
Query: 925 TPCSPGDPGAIEMTWIDVPSDKLGEPPV 842
TPCSPGDPGA+EMTW+DVP DKL EP V
Sbjct: 178 TPCSPGDPGAMEMTWMDVPGDKLLEPVV 205
Score = 56.4 bits (130), Expect = 1e-07
Identities = 24/33 (72%), Positives = 30/33 (90%)
Frame = -1
Query: 839 MSDMLRSLAVSKPTVNDDDMVKLRKFMEDFGQE 741
MSDMLRSLA ++PTVN DD++K++KF EDFGQE
Sbjct: 207 MSDMLRSLATTRPTVNADDLLKVKKFSEDFGQE 239
>AF282903-1|AAG01470.1| 437|Homo sapiens vacuolar protein sorting
factor 4A protein.
Length = 437
Score = 56.8 bits (131), Expect = 1e-07
Identities = 23/28 (82%), Positives = 25/28 (89%)
Frame = -2
Query: 925 TPCSPGDPGAIEMTWIDVPSDKLGEPPV 842
TPCSPGDPGA+EMTW+DVP DKL EP V
Sbjct: 375 TPCSPGDPGAMEMTWMDVPGDKLLEPVV 402
Score = 56.4 bits (130), Expect = 1e-07
Identities = 24/33 (72%), Positives = 30/33 (90%)
Frame = -1
Query: 839 MSDMLRSLAVSKPTVNDDDMVKLRKFMEDFGQE 741
MSDMLRSLA ++PTVN DD++K++KF EDFGQE
Sbjct: 404 MSDMLRSLATTRPTVNADDLLKVKKFSEDFGQE 436
>AF255952-1|AAK52408.1| 437|Homo sapiens vacuolar protein sorting
VPS4-1 protein.
Length = 437
Score = 56.8 bits (131), Expect = 1e-07
Identities = 23/28 (82%), Positives = 25/28 (89%)
Frame = -2
Query: 925 TPCSPGDPGAIEMTWIDVPSDKLGEPPV 842
TPCSPGDPGA+EMTW+DVP DKL EP V
Sbjct: 375 TPCSPGDPGAMEMTWMDVPGDKLLEPVV 402
Score = 56.4 bits (130), Expect = 1e-07
Identities = 24/33 (72%), Positives = 30/33 (90%)
Frame = -1
Query: 839 MSDMLRSLAVSKPTVNDDDMVKLRKFMEDFGQE 741
MSDMLRSLA ++PTVN DD++K++KF EDFGQE
Sbjct: 404 MSDMLRSLATTRPTVNADDLLKVKKFSEDFGQE 436
>AF159063-1|AAD49227.1| 437|Homo sapiens SKD1-homolog protein.
Length = 437
Score = 56.8 bits (131), Expect = 1e-07
Identities = 23/28 (82%), Positives = 25/28 (89%)
Frame = -2
Query: 925 TPCSPGDPGAIEMTWIDVPSDKLGEPPV 842
TPCSPGDPGA+EMTW+DVP DKL EP V
Sbjct: 375 TPCSPGDPGAMEMTWMDVPGDKLLEPVV 402
Score = 56.4 bits (130), Expect = 1e-07
Identities = 24/33 (72%), Positives = 30/33 (90%)
Frame = -1
Query: 839 MSDMLRSLAVSKPTVNDDDMVKLRKFMEDFGQE 741
MSDMLRSLA ++PTVN DD++K++KF EDFGQE
Sbjct: 404 MSDMLRSLATTRPTVNADDLLKVKKFSEDFGQE 436
>AF155740-1|AAD42971.1| 432|Homo sapiens vacuolar sorting protein 4
protein.
Length = 432
Score = 56.8 bits (131), Expect = 1e-07
Identities = 23/28 (82%), Positives = 25/28 (89%)
Frame = -2
Query: 925 TPCSPGDPGAIEMTWIDVPSDKLGEPPV 842
TPCSPGDPGA+EMTW+DVP DKL EP V
Sbjct: 370 TPCSPGDPGAMEMTWMDVPGDKLLEPVV 397
Score = 56.4 bits (130), Expect = 1e-07
Identities = 24/33 (72%), Positives = 30/33 (90%)
Frame = -1
Query: 839 MSDMLRSLAVSKPTVNDDDMVKLRKFMEDFGQE 741
MSDMLRSLA ++PTVN DD++K++KF EDFGQE
Sbjct: 399 MSDMLRSLATTRPTVNADDLLKVKKFSEDFGQE 431
>AF132747-1|AAL75948.1| 437|Homo sapiens SKD2 protein protein.
Length = 437
Score = 56.8 bits (131), Expect = 1e-07
Identities = 23/28 (82%), Positives = 25/28 (89%)
Frame = -2
Query: 925 TPCSPGDPGAIEMTWIDVPSDKLGEPPV 842
TPCSPGDPGA+EMTW+DVP DKL EP V
Sbjct: 375 TPCSPGDPGAMEMTWMDVPGDKLLEPVV 402
Score = 56.4 bits (130), Expect = 1e-07
Identities = 24/33 (72%), Positives = 30/33 (90%)
Frame = -1
Query: 839 MSDMLRSLAVSKPTVNDDDMVKLRKFMEDFGQE 741
MSDMLRSLA ++PTVN DD++K++KF EDFGQE
Sbjct: 404 MSDMLRSLATTRPTVNADDLLKVKKFSEDFGQE 436
>AF112215-1|AAF17203.1| 437|Homo sapiens SKD1 protein protein.
Length = 437
Score = 56.8 bits (131), Expect = 1e-07
Identities = 23/28 (82%), Positives = 25/28 (89%)
Frame = -2
Query: 925 TPCSPGDPGAIEMTWIDVPSDKLGEPPV 842
TPCSPGDPGA+EMTW+DVP DKL EP V
Sbjct: 375 TPCSPGDPGAMEMTWMDVPGDKLLEPVV 402
Score = 56.4 bits (130), Expect = 1e-07
Identities = 24/33 (72%), Positives = 30/33 (90%)
Frame = -1
Query: 839 MSDMLRSLAVSKPTVNDDDMVKLRKFMEDFGQE 741
MSDMLRSLA ++PTVN DD++K++KF EDFGQE
Sbjct: 404 MSDMLRSLATTRPTVNADDLLKVKKFSEDFGQE 436
Database: human
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 76,859,062
Number of sequences in database: 237,096
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 111,163,705
Number of Sequences: 237096
Number of extensions: 2021944
Number of successful extensions: 10505
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 10345
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 10500
length of database: 76,859,062
effective HSP length: 90
effective length of database: 55,520,422
effective search space used: 12103451996
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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