Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P06_pT_D12
         (926 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AC024756-9|AAK29883.4|  430|Caenorhabditis elegans Related to ye...    54   1e-07
AL110487-7|CAB54431.1|  581|Caenorhabditis elegans Hypothetical ...    29   4.7  
Z70783-10|CAC70122.1| 1037|Caenorhabditis elegans Hypothetical p...    28   8.2  

>AC024756-9|AAK29883.4|  430|Caenorhabditis elegans Related to yeast
           vacuolar proteinsorting factor protein 4 protein.
          Length = 430

 Score = 54.4 bits (125), Expect = 1e-07
 Identities = 21/31 (67%), Positives = 23/31 (74%)
 Frame = -2

Query: 925 TPCSPGDPGAIEMTWIDVPSDKLGEPPVQCQ 833
           TPCSPGDP AI M W+DVP DKL  PP+  Q
Sbjct: 366 TPCSPGDPHAIAMNWLDVPGDKLANPPLSMQ 396



 Score = 43.2 bits (97), Expect = 3e-04
 Identities = 19/35 (54%), Positives = 25/35 (71%)
 Frame = -1

Query: 842 TMSDMLRSLAVSKPTVNDDDMVKLRKFMEDFGQEG 738
           +M D+ RSLA  KPTVN+ D+ +L  F  DFGQ+G
Sbjct: 394 SMQDISRSLASVKPTVNNTDLDRLEAFKNDFGQDG 428


>AL110487-7|CAB54431.1|  581|Caenorhabditis elegans Hypothetical
           protein Y39E4B.10 protein.
          Length = 581

 Score = 29.1 bits (62), Expect = 4.7
 Identities = 29/100 (29%), Positives = 46/100 (46%)
 Frame = +2

Query: 338 KRLQVFIIYLQIYKYLQFNIDKQLTIL*SFLNFYIYNINNAKILFYYFQKEYVLLELVII 517
           K+ Q F+I+L I+K   ++I K       F NF+     + KIL   F K+ +   L+  
Sbjct: 299 KKTQKFLIFLNIFKKNYYHIRKI-----RFFNFFYI---SKKILTKKFFKKNLFFFLIFN 350

Query: 518 NIKNKKSVFIAILTNNNKIVEIQLFLSFVFFFDNHKTEAI 637
           N+  +KS+F +    +N   +      F F   N  T AI
Sbjct: 351 NL--EKSIF-SNFKKSNTFFQFSKNKIFNFLIKNLYTNAI 387


>Z70783-10|CAC70122.1| 1037|Caenorhabditis elegans Hypothetical
           protein ZK856.13 protein.
          Length = 1037

 Score = 28.3 bits (60), Expect = 8.2
 Identities = 15/43 (34%), Positives = 20/43 (46%)
 Frame = -1

Query: 803 PTVNDDDMVKLRKFMEDFGQEG*A*ICFNDKLRLNNYNYTKYE 675
           P    DD V      E FG    A +C++  + LNN N+  YE
Sbjct: 317 PKTPPDDWVHWGDEAEKFGMIEEAAVCYDRAIHLNNENWKFYE 359


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,455,036
Number of Sequences: 27780
Number of extensions: 354221
Number of successful extensions: 852
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 815
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 852
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2381234086
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)