Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P06_pT_D11
         (696 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC890.07c |rmt1|prmt1|type I protein arginine N-methyltransfer...    40   4e-04
SPBC8D2.10c |rmt3|rmt3|type I ribosomal protein arginine N-methy...    37   0.003
SPAPB18E9.02c |ppk18||serine/threonine protein kinase Ppk18 |Sch...    27   2.6  
SPBC14F5.07 |||ER-localized ubiquitin ligase |Schizosaccharomyce...    26   5.9  

>SPAC890.07c |rmt1|prmt1|type I protein arginine N-methyltransferase
           Rmt1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 339

 Score = 39.5 bits (88), Expect = 4e-04
 Identities = 19/44 (43%), Positives = 25/44 (56%)
 Frame = -1

Query: 696 WKQTVXYFDDFMTVKKFEEITGTFSMRQNARNNRDLDFEIEIDF 565
           WKQTV Y    +TVK  E I GT + +    N+R+LD +I   F
Sbjct: 278 WKQTVFYTHKDLTVKAGEYIRGTITCKPAEGNHRELDIDISYTF 321


>SPBC8D2.10c |rmt3|rmt3|type I ribosomal protein arginine
           N-methytransferase Rmt3|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 543

 Score = 36.7 bits (81), Expect = 0.003
 Identities = 16/47 (34%), Positives = 25/47 (53%)
 Frame = -1

Query: 696 WKQTVXYFDDFMTVKKFEEITGTFSMRQNARNNRDLDFEIEIDFKGE 556
           WKQ V    +   ++K   + GT S  +N +NNRDLD  +  +  G+
Sbjct: 488 WKQCVLLLRNRPFLQKGTRVEGTISFSKNKKNNRDLDISVHWNVNGK 534


>SPAPB18E9.02c |ppk18||serine/threonine protein kinase Ppk18
            |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1316

 Score = 27.1 bits (57), Expect = 2.6
 Identities = 15/49 (30%), Positives = 23/49 (46%)
 Frame = -2

Query: 617  ARTRGTIATWTLRSRSTSRGNSVRSTRRITTGCASFDYFNFFYETNSSI 471
            ++ RG+    +   RS  R  S R +RR +   + FD F  F   N S+
Sbjct: 989  SQERGSQFLRSSHGRSRERSTSARRSRRFSEANSEFDEFGPFSYKNLSV 1037


>SPBC14F5.07 |||ER-localized ubiquitin ligase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 1242

 Score = 25.8 bits (54), Expect = 5.9
 Identities = 9/22 (40%), Positives = 15/22 (68%)
 Frame = -1

Query: 354 TVFCYCCSLNSYLLQQCHRDQE 289
           + FC C  L+SY++ Q + D+E
Sbjct: 845 STFCRCLRLSSYVMGQRYSDEE 866


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,730,930
Number of Sequences: 5004
Number of extensions: 54803
Number of successful extensions: 146
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 143
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 146
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 321151040
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)