Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P06_pT_D11
         (696 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

04_04_1585 + 34616343-34616531,34616677-34616742,34616842-346169...    35   0.054
05_01_0344 - 2699464-2699520,2699788-2699939,2700592-2701039           30   2.0  
06_01_0117 + 912780-912959,913754-913828,914059-914112,914848-91...    28   6.2  

>04_04_1585 +
           34616343-34616531,34616677-34616742,34616842-34616910,
           34617408-34617443,34617877-34617942,34618216-34618284,
           34618394-34618471,34618674-34618752,34618866-34618960,
           34619056-34619140,34619390-34619571,34619681-34619799,
           34620529-34620550
          Length = 384

 Score = 35.1 bits (77), Expect = 0.054
 Identities = 15/44 (34%), Positives = 26/44 (59%)
 Frame = -1

Query: 696 WKQTVXYFDDFMTVKKFEEITGTFSMRQNARNNRDLDFEIEIDF 565
           W QT+ YF D + VK+ + I G+  + Q+  N R L+ +++  F
Sbjct: 336 WHQTILYFPDPIEVKQDQIIEGSVKVSQSEENPRFLNIQLDCTF 379


>05_01_0344 - 2699464-2699520,2699788-2699939,2700592-2701039
          Length = 218

 Score = 29.9 bits (64), Expect = 2.0
 Identities = 10/15 (66%), Positives = 14/15 (93%)
 Frame = -1

Query: 339 CCSLNSYLLQQCHRD 295
           CC+L+S +LQQC+RD
Sbjct: 202 CCTLDSSILQQCYRD 216


>06_01_0117 +
           912780-912959,913754-913828,914059-914112,914848-914913,
           915137-915241,915454-915570,915827-915927,916012-916058,
           916664-916735,916828-916983,917139-917368,917472-917511,
           917603-917736,917830-917931,918726-918770,919129-919206,
           919225-919365,919447-919542,919732-919833,920185-920283
          Length = 679

 Score = 28.3 bits (60), Expect = 6.2
 Identities = 12/33 (36%), Positives = 20/33 (60%)
 Frame = -1

Query: 390 TFLVRLEFLIGRTVFCYCCSLNSYLLQQCHRDQ 292
           TF+V ++F + +  F +C S+ + LL   H DQ
Sbjct: 502 TFVVNIQFSLEKYQFSFCDSIRARLLYFGHADQ 534


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,219,935
Number of Sequences: 37544
Number of extensions: 324669
Number of successful extensions: 699
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 678
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 699
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1780264028
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)