Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P06_pT_D11
         (696 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AL110477-12|CAB54335.1|  348|Caenorhabditis elegans Hypothetical...    82   3e-16
AC006674-9|AAF39935.1|  178|Caenorhabditis elegans Hypothetical ...    31   1.0  
U88310-1|AAB42340.1|  663|Caenorhabditis elegans Hypothetical pr...    28   5.5  

>AL110477-12|CAB54335.1|  348|Caenorhabditis elegans Hypothetical
           protein Y113G7B.17 protein.
          Length = 348

 Score = 82.2 bits (194), Expect = 3e-16
 Identities = 36/59 (61%), Positives = 41/59 (69%)
 Frame = -1

Query: 696 WKQTVXYFDDFMTVKKFEEITGTFSMRQNARNNRDLDFEIEIDFKGELCQVNEKNHYRM 520
           WKQTV Y  D +TVKK EEITG+F M  N  N RDLD  I  DFKGE+C +NE+N Y M
Sbjct: 289 WKQTVFYLKDALTVKKGEEITGSFEMAPNKNNERDLDINISFDFKGEVCDLNEQNTYTM 347


>AC006674-9|AAF39935.1|  178|Caenorhabditis elegans Hypothetical
           protein K12H6.5 protein.
          Length = 178

 Score = 30.7 bits (66), Expect = 1.0
 Identities = 24/76 (31%), Positives = 37/76 (48%)
 Frame = -1

Query: 465 CMLPSSKITYMYVPYP*RIDTMSSCTFLVRLEFLIGRTVFCYCCSLNSYLLQQCHRDQES 286
           C LP +  T+ + P+     TM+S T ++ L  L+G +   Y    NS  L Q H +   
Sbjct: 44  CCLPINHPTHRHHPHH---PTMTSSTTILLLLALVGFSSGSYMSQENSAKLAQLHLNM-- 98

Query: 285 TLLVASFYHPIGSRFE 238
            +L+AS  H  G  +E
Sbjct: 99  -VLLASSSHEYGMLYE 113


>U88310-1|AAB42340.1|  663|Caenorhabditis elegans Hypothetical
           protein C24G7.4 protein.
          Length = 663

 Score = 28.3 bits (60), Expect = 5.5
 Identities = 11/32 (34%), Positives = 19/32 (59%)
 Frame = -1

Query: 114 P*SYHVIIKKKMCLSXVIVTCMQENALRRARG 19
           P +Y+V  +KK+C     +TCM  + L++  G
Sbjct: 368 PFTYNVDGRKKICAPYESITCMDNHMLKKVNG 399


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,338,988
Number of Sequences: 27780
Number of extensions: 315869
Number of successful extensions: 769
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 731
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 769
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1602927856
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)