Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P06_pT_D10
(818 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBPB2B2.12c |||UDP-glucose 4-epimerase|Schizosaccharomyces pomb... 73 5e-14
SPBC1718.06 |msp1|mgm1|mitochondrial GTPase Msp1|Schizosaccharom... 27 4.2
SPCC330.11 |btb1||BTB/POZ domain protein Btb1|Schizosaccharomyce... 26 5.6
SPAC31A2.05c |mis4||cohesin loading factor Mis4|Schizosaccharomy... 26 7.4
SPAC22F8.05 |||alpha,alpha-trehalose-phosphate synthase |Schizos... 25 9.8
SPBC17D1.05 |||sequence orphan|Schizosaccharomyces pombe|chr 2||... 25 9.8
SPAC6F6.06c |rax2||cell polarity factor Rax2|Schizosaccharomyces... 25 9.8
SPAC16.05c |sfp1||transcription factor Sfp1 |Schizosaccharomyces... 25 9.8
>SPBPB2B2.12c |||UDP-glucose 4-epimerase|Schizosaccharomyces pombe|chr
2|||Manual
Length = 713
Score = 72.9 bits (171), Expect = 5e-14
Identities = 77/280 (27%), Positives = 121/280 (43%), Gaps = 17/280 (6%)
Frame = -1
Query: 818 DGTTYQLXNNIG-KDHLHGGINGFNKANWNSTV-----DGXKVIFSYLSKDGEEGYPGDL 657
DG Y L N K LHGG NGF+K + + D + F + KDG G+P DL
Sbjct: 436 DGHLYTLCKNENNKTTLHGGNNGFDKQFFLGPIARQYEDYNTLEFILVDKDGNNGFPSDL 495
Query: 656 ITNITYEVTDDNALYVDFMS-----XXXXXXXXXXXNHSYFNLAGHDTGVQEIYNHIFVI 492
T + Y + +N+L +++ S NHSY+NLA + + I I
Sbjct: 496 ETLVKYTI-KNNSLEIEYKSVIPEYSKLNVTAVNLTNHSYWNLASPN---KTIDGTIIKS 551
Query: 491 NADKITETDS-GSIPTGGFISVGGTPYDLRVPTKLGDVINKTGNGFDD----NFCISTYT 327
+ + +S S+PTG + D+ PTKL I+ D FC+ T
Sbjct: 552 TTNVYLKVNSETSLPTGDIVE---WQNDITKPTKLDPNISFDNCFIVDREASKFCLDT-R 607
Query: 326 NKSLNFVSRILHPSSGRTLEVYSDQPGVQFYTSNSLPAPQESALVGKQGVGYRRHGAFCL 147
SL + ++HPS L V + +P Q YT + G ++ FC+
Sbjct: 608 KYSLKNIVEVIHPSVPVKLVVSTTEPAFQLYTGD-----------GNDICEFQSRSGFCV 656
Query: 146 ETQNYPDAVHHTNFPR-AVLYPGEVYKHKXVYRFAAQKLQ 30
ET + +A+++ + + +L GEVY + + AQ L+
Sbjct: 657 ETGRFINALNNEKWSKQVILRKGEVYGARSKFSLYAQDLE 696
>SPBC1718.06 |msp1|mgm1|mitochondrial GTPase
Msp1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 903
Score = 26.6 bits (56), Expect = 4.2
Identities = 10/26 (38%), Positives = 16/26 (61%)
Frame = +1
Query: 310 KFNDLFVYVEMQKLSSKPFPVLFMTS 387
+ N + Y+E QK SS+P P + T+
Sbjct: 747 RMNQVLQYLEEQKTSSEPLPASYSTA 772
>SPCC330.11 |btb1||BTB/POZ domain protein Btb1|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 1347
Score = 26.2 bits (55), Expect = 5.6
Identities = 14/28 (50%), Positives = 18/28 (64%)
Frame = -2
Query: 178 LATDVTARSASRPKITRTLSITRISREQ 95
L T + RSAS PK ++ LSI+ I EQ
Sbjct: 1217 LLTKPSPRSASLPKNSQPLSISEIMTEQ 1244
>SPAC31A2.05c |mis4||cohesin loading factor Mis4|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1583
Score = 25.8 bits (54), Expect = 7.4
Identities = 21/71 (29%), Positives = 37/71 (52%), Gaps = 2/71 (2%)
Frame = +3
Query: 12 RQNNRXLQLLSGKSVHXFMFIYFARIQNCSREIRVMDSVRVILGLEAERAVTS--VANSL 185
R +R +L +GKS+ + ++ IQ+CS + + DS V ++ A+ S + L
Sbjct: 483 RSVSRTYRLSNGKSIQYYSTLFVRLIQSCSIQ-NLFDSEIVQSESKSTEALHSGNLTEHL 541
Query: 186 FTNQSRLLRSR 218
T +S L +SR
Sbjct: 542 KTVESILSKSR 552
>SPAC22F8.05 |||alpha,alpha-trehalose-phosphate synthase
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 891
Score = 25.4 bits (53), Expect = 9.8
Identities = 9/40 (22%), Positives = 21/40 (52%)
Frame = -1
Query: 167 RHGAFCLETQNYPDAVHHTNFPRAVLYPGEVYKHKXVYRF 48
+H + + T + H+ ++ R +L+P Y+H ++ F
Sbjct: 219 KHQSLVVYTSDSNFEGHYNHYCRKILWPSLHYQHNEIFSF 258
>SPBC17D1.05 |||sequence orphan|Schizosaccharomyces pombe|chr
2|||Manual
Length = 368
Score = 25.4 bits (53), Expect = 9.8
Identities = 19/68 (27%), Positives = 24/68 (35%)
Frame = -1
Query: 377 NKTGNGFDDNFCISTYTNKSLNFVSRILHPSSGRTLEVYSDQPGVQFYTSNSLPAPQESA 198
N + ++ F S + VS PSSG S P + PA S
Sbjct: 60 NSFASSVNNPFSTSALSEALNGSVSMSHVPSSGLLKSTLSSTPTAGSNLLGTSPAEPASG 119
Query: 197 LVGKQGVG 174
LVG G G
Sbjct: 120 LVGSSGFG 127
>SPAC6F6.06c |rax2||cell polarity factor Rax2|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1155
Score = 25.4 bits (53), Expect = 9.8
Identities = 11/28 (39%), Positives = 14/28 (50%)
Frame = +1
Query: 70 LYTSPGYRTALGKFV*WTASG*FWVSRQ 153
+YTS GY + F W S WVS +
Sbjct: 669 VYTSEGYAISTSGFSLWNPSSKSWVSME 696
>SPAC16.05c |sfp1||transcription factor Sfp1 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 442
Score = 25.4 bits (53), Expect = 9.8
Identities = 11/42 (26%), Positives = 21/42 (50%)
Frame = +3
Query: 390 EFSWDAKIVGRSSYAYKTTSRNRSRIRLRDLVSVYNKDMVVD 515
E+S D+ +S++++ + R RIR+ DL + D
Sbjct: 117 EYSLDSNNAAQSNHSHIQALKQRERIRMHDLADQLGTSEISD 158
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,201,924
Number of Sequences: 5004
Number of extensions: 68051
Number of successful extensions: 180
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 168
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 178
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 400438000
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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