Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P06_pT_D10
(818 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AF125952-4|AAD14698.1| 330|Caenorhabditis elegans Hypothetical ... 105 4e-23
AC006722-10|ABP57811.1| 330|Caenorhabditis elegans Hypothetical... 105 4e-23
Z81571-11|CAC35914.1| 1579|Caenorhabditis elegans Hypothetical p... 31 0.99
AL132848-7|CAC35915.1| 1579|Caenorhabditis elegans Hypothetical ... 31 0.99
Z74028-3|CAA98425.1| 1908|Caenorhabditis elegans Hypothetical pr... 30 1.7
U41533-13|AAA83174.3| 955|Caenorhabditis elegans Hypothetical p... 29 3.0
Z81506-4|CAB04131.1| 191|Caenorhabditis elegans Hypothetical pr... 29 5.3
AY130758-2|AAN61518.1| 18519|Caenorhabditis elegans 2MDa_2 prote... 29 5.3
AY130758-1|AAN61517.1| 18534|Caenorhabditis elegans 2MDa_1 prote... 29 5.3
>AF125952-4|AAD14698.1| 330|Caenorhabditis elegans Hypothetical
protein C01B4.6 protein.
Length = 330
Score = 105 bits (252), Expect = 4e-23
Identities = 76/262 (29%), Positives = 113/262 (43%), Gaps = 4/262 (1%)
Frame = -1
Query: 818 DGTTYQLXNNIGKDHLHGGINGFNKANWNSTVDGXK-VIFSYLSKDGEEGYPGDLITNIT 642
DG Y + N G +LHGG NG W + V FS + + ++G PGD ++T
Sbjct: 76 DGKQYTMTPNNGPHYLHGGPNGLGYRKWEVVRHAPESVSFSVRANEQDDGLPGDAKIDVT 135
Query: 641 YEVTDDNALYVDFMSXXXXXXXXXXXNHSYFNLAGHDTGVQEIYNHIFVINADKITETDS 462
Y V D N L ++ + NH+Y+NL G DT + H + AD+ E D
Sbjct: 136 YTVNDRNQLIIEHHATCDTPGLLALTNHAYWNLDGSDT----VAEHFLEMEADEFVEVDD 191
Query: 461 GSIPTGGFISVGGTPYDLRVPTKLGDVINKTGN--GFDDNFCISTYTNKSL-NFVSRILH 291
PTG SV T +D R +L + D++ I+ T S + R
Sbjct: 192 TFCPTGAIRSVTDTGFDFRSGKQLKESGKDAEELLDLDNDLVITKKTPPSTPSTYLRFWS 251
Query: 290 PSSGRTLEVYSDQPGVQFYTSNSLPAPQESALVGKQGVGYRRHGAFCLETQNYPDAVHHT 111
SG L + + P + Y S L GK+G Y+ + A +E Q + A +
Sbjct: 252 EKSGIELSITTSYPVIHLYASKFLDCK------GKKGEHYKANKALAIEPQFHSAAPNFD 305
Query: 110 NFPRAVLYPGEVYKHKXVYRFA 45
+FP L PG+ Y + VY F+
Sbjct: 306 HFPDVSLRPGDHYCQEIVYTFS 327
>AC006722-10|ABP57811.1| 330|Caenorhabditis elegans Hypothetical
protein Y19D10A.16 protein.
Length = 330
Score = 105 bits (252), Expect = 4e-23
Identities = 76/262 (29%), Positives = 113/262 (43%), Gaps = 4/262 (1%)
Frame = -1
Query: 818 DGTTYQLXNNIGKDHLHGGINGFNKANWNSTVDGXK-VIFSYLSKDGEEGYPGDLITNIT 642
DG Y + N G +LHGG NG W + V FS + + ++G PGD ++T
Sbjct: 76 DGKQYTMTPNNGPHYLHGGPNGLGYRKWEVVRHAPESVSFSVRANEQDDGLPGDAKIDVT 135
Query: 641 YEVTDDNALYVDFMSXXXXXXXXXXXNHSYFNLAGHDTGVQEIYNHIFVINADKITETDS 462
Y V D N L ++ + NH+Y+NL G DT + H + AD+ E D
Sbjct: 136 YTVNDRNQLIIEHHATCDTPGLLALTNHAYWNLDGSDT----VAEHFLEMEADEFVEVDD 191
Query: 461 GSIPTGGFISVGGTPYDLRVPTKLGDVINKTGN--GFDDNFCISTYTNKSL-NFVSRILH 291
PTG SV T +D R +L + D++ I+ T S + R
Sbjct: 192 TFCPTGAIRSVTDTGFDFRSGKQLKESGKDAEELLDLDNDLVITKKTPPSTPSTYLRFWS 251
Query: 290 PSSGRTLEVYSDQPGVQFYTSNSLPAPQESALVGKQGVGYRRHGAFCLETQNYPDAVHHT 111
SG L + + P + Y S L GK+G Y+ + A +E Q + A +
Sbjct: 252 EKSGIELSITTSYPVIHLYASKFLDCK------GKKGEHYKANKALAIEPQFHSAAPNFD 305
Query: 110 NFPRAVLYPGEVYKHKXVYRFA 45
+FP L PG+ Y + VY F+
Sbjct: 306 HFPDVSLRPGDHYCQEIVYTFS 327
>Z81571-11|CAC35914.1| 1579|Caenorhabditis elegans Hypothetical
protein M01G12.12 protein.
Length = 1579
Score = 31.1 bits (67), Expect = 0.99
Identities = 17/53 (32%), Positives = 29/53 (54%), Gaps = 1/53 (1%)
Frame = -1
Query: 260 SDQPGVQFYTSNSLPAPQESALVGK-QGVGYRRHGAFCLETQNYPDAVHHTNF 105
SDQ + FY +N + + +ALV K + + +++ G F PDA + +NF
Sbjct: 1154 SDQDDMSFYNTNRMIETKMTALVSKFRTIFFQQFGGFQEVCTLLPDAYNESNF 1206
>AL132848-7|CAC35915.1| 1579|Caenorhabditis elegans Hypothetical
protein M01G12.12 protein.
Length = 1579
Score = 31.1 bits (67), Expect = 0.99
Identities = 17/53 (32%), Positives = 29/53 (54%), Gaps = 1/53 (1%)
Frame = -1
Query: 260 SDQPGVQFYTSNSLPAPQESALVGK-QGVGYRRHGAFCLETQNYPDAVHHTNF 105
SDQ + FY +N + + +ALV K + + +++ G F PDA + +NF
Sbjct: 1154 SDQDDMSFYNTNRMIETKMTALVSKFRTIFFQQFGGFQEVCTLLPDAYNESNF 1206
>Z74028-3|CAA98425.1| 1908|Caenorhabditis elegans Hypothetical
protein C14C10.5 protein.
Length = 1908
Score = 30.3 bits (65), Expect = 1.7
Identities = 16/42 (38%), Positives = 21/42 (50%), Gaps = 4/42 (9%)
Frame = -3
Query: 534 RYWCPRDLQPYLC----YKR*QDHGDGFWIDSDWWFYKRRRN 421
RYW DL +LC +R HG G W D W++Y+ N
Sbjct: 253 RYWKLLDL--FLCTAMPVERQLTHGCGIWFDEAWYWYEEISN 292
>U41533-13|AAA83174.3| 955|Caenorhabditis elegans Hypothetical
protein R05F9.12 protein.
Length = 955
Score = 29.5 bits (63), Expect = 3.0
Identities = 13/82 (15%), Positives = 35/82 (42%)
Frame = +3
Query: 339 DAEVVIETVPSFIYDVAEFSWDAKIVGRSSYAYKTTSRNRSRIRLRDLVSVYNKDMVVDL 518
D E ++ S+ Y +F +++ G S + ++ + D++ ++N +
Sbjct: 816 DGETIVNDFNSYDYHQFDFMYNSTATGGSVTITHSKKSSKISLPTLDIIEIFNYPSAPNF 875
Query: 519 LDTSIVASQIKIRMVRQIYNGL 584
+I + + + R Y+G+
Sbjct: 876 RSFTINGKLVNVNVQRSTYSGI 897
>Z81506-4|CAB04131.1| 191|Caenorhabditis elegans Hypothetical
protein F16H6.5 protein.
Length = 191
Score = 28.7 bits (61), Expect = 5.3
Identities = 21/73 (28%), Positives = 30/73 (41%), Gaps = 2/73 (2%)
Frame = -1
Query: 560 HSYFNLAGHDT-GVQEIYNHIFVINADKITETDS-GSIPTGGFISVGGTPYDLRVPTKLG 387
H +L+ H V +I+ + +D TE D G IP GG + GT R K
Sbjct: 87 HFTIHLSSHSQKNVIQIFQSAY---SDGYTEEDKKGKIPEGGRVKCAGTETGARSNVKCE 143
Query: 386 DVINKTGNGFDDN 348
+V + D N
Sbjct: 144 EVAKEVNEYIDSN 156
>AY130758-2|AAN61518.1| 18519|Caenorhabditis elegans 2MDa_2 protein
protein.
Length = 18519
Score = 28.7 bits (61), Expect = 5.3
Identities = 12/27 (44%), Positives = 15/27 (55%)
Frame = +2
Query: 254 DRCRLRECVPMMDEGSEIRNLMIYLCT 334
D RLR P D GS +RN + +CT
Sbjct: 15803 DSVRLRWAAPTNDGGSPVRNYTVEMCT 15829
>AY130758-1|AAN61517.1| 18534|Caenorhabditis elegans 2MDa_1 protein
protein.
Length = 18534
Score = 28.7 bits (61), Expect = 5.3
Identities = 12/27 (44%), Positives = 15/27 (55%)
Frame = +2
Query: 254 DRCRLRECVPMMDEGSEIRNLMIYLCT 334
D RLR P D GS +RN + +CT
Sbjct: 15803 DSVRLRWAAPTNDGGSPVRNYTVEMCT 15829
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,752,529
Number of Sequences: 27780
Number of extensions: 391200
Number of successful extensions: 1083
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 1018
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1079
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 2019417216
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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