Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P06_pT_D10
         (818 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecul...    29   0.052
AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member A...    29   0.052
AB072429-1|BAB83990.1|  388|Apis mellifera IP3phosphatase protein.     26   0.36 
AY398690-1|AAR83734.1|  416|Apis mellifera major royal jelly pro...    24   1.9  
AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein ...    23   4.5  
AB086196-1|BAD06465.1|  289|Apis mellifera Period protein.             23   4.5  
DQ667183-1|ABG75735.1|  463|Apis mellifera GABA-gated ion channe...    22   5.9  
Z26319-1|CAA81228.1|  464|Apis mellifera royal jelly protein RJP...    22   7.8  
AY273778-1|AAP33487.1|  427|Apis mellifera ultraspiracle protein...    22   7.8  
AF263459-1|AAF73057.1|  427|Apis mellifera ultraspiracle protein...    22   7.8  

>AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecule
            AbsCAM-Ig7B protein.
          Length = 1923

 Score = 29.1 bits (62), Expect = 0.052
 Identities = 14/33 (42%), Positives = 17/33 (51%)
 Frame = -1

Query: 770  HGGINGFNKANWNSTVDGXKVIFSYLSKDGEEG 672
            HG I GFN     ++       FS +S DGEEG
Sbjct: 1036 HGDIQGFNVGYRETSSSNPSYNFSSVSGDGEEG 1068


>AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member
            AbsCAM-Ig7A protein.
          Length = 1919

 Score = 29.1 bits (62), Expect = 0.052
 Identities = 14/33 (42%), Positives = 17/33 (51%)
 Frame = -1

Query: 770  HGGINGFNKANWNSTVDGXKVIFSYLSKDGEEG 672
            HG I GFN     ++       FS +S DGEEG
Sbjct: 1032 HGDIQGFNVGYRETSSSNPSYNFSSVSGDGEEG 1064


>AB072429-1|BAB83990.1|  388|Apis mellifera IP3phosphatase protein.
          Length = 388

 Score = 26.2 bits (55), Expect = 0.36
 Identities = 14/43 (32%), Positives = 23/43 (53%), Gaps = 2/43 (4%)
 Frame = +3

Query: 78  FARIQNCSREIRVMDSVRVILGLEAERA--VTSVANSLFTNQS 200
           F R+   S E+R+ D +RV L  +   A   T++ N  F ++S
Sbjct: 67  FVRLLMSSEELRLFDKIRVFLDEDYSSAEHFTALGNFYFVHES 109


>AY398690-1|AAR83734.1|  416|Apis mellifera major royal jelly
           protein 8 protein.
          Length = 416

 Score = 23.8 bits (49), Expect = 1.9
 Identities = 9/15 (60%), Positives = 11/15 (73%)
 Frame = -1

Query: 404 VPTKLGDVINKTGNG 360
           VP+ L  + NKTGNG
Sbjct: 84  VPSSLNVITNKTGNG 98


>AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein
           protein.
          Length = 1124

 Score = 22.6 bits (46), Expect = 4.5
 Identities = 11/27 (40%), Positives = 16/27 (59%)
 Frame = +1

Query: 25  GXCSF*AANLYTXLCLYTSPGYRTALG 105
           G C+    +++  L LYT+P   TALG
Sbjct: 163 GFCA--VISMHDGLVLYTTPSICTALG 187


>AB086196-1|BAD06465.1|  289|Apis mellifera Period protein.
          Length = 289

 Score = 22.6 bits (46), Expect = 4.5
 Identities = 11/27 (40%), Positives = 16/27 (59%)
 Frame = +1

Query: 25  GXCSF*AANLYTXLCLYTSPGYRTALG 105
           G C+    +++  L LYT+P   TALG
Sbjct: 158 GFCA--VISMHDGLVLYTTPSICTALG 182


>DQ667183-1|ABG75735.1|  463|Apis mellifera GABA-gated ion channel
           protein.
          Length = 463

 Score = 22.2 bits (45), Expect = 5.9
 Identities = 12/19 (63%), Positives = 13/19 (68%), Gaps = 1/19 (5%)
 Frame = +2

Query: 116 DGQR-PGNFGSRGRTRRDV 169
           D QR P  FGS G T+RDV
Sbjct: 140 DTQRCPLQFGSFGYTKRDV 158


>Z26319-1|CAA81228.1|  464|Apis mellifera royal jelly protein
           RJP57-2 protein.
          Length = 464

 Score = 21.8 bits (44), Expect = 7.8
 Identities = 9/15 (60%), Positives = 11/15 (73%)
 Frame = -1

Query: 404 VPTKLGDVINKTGNG 360
           VP+ L  V +KTGNG
Sbjct: 91  VPSSLNVVSDKTGNG 105


>AY273778-1|AAP33487.1|  427|Apis mellifera ultraspiracle protein
           protein.
          Length = 427

 Score = 21.8 bits (44), Expect = 7.8
 Identities = 7/12 (58%), Positives = 8/12 (66%)
 Frame = -3

Query: 801 TR*QHWERSFTW 766
           T+ QHW R  TW
Sbjct: 18  TQAQHWSRGNTW 29


>AF263459-1|AAF73057.1|  427|Apis mellifera ultraspiracle protein
           protein.
          Length = 427

 Score = 21.8 bits (44), Expect = 7.8
 Identities = 7/12 (58%), Positives = 8/12 (66%)
 Frame = -3

Query: 801 TR*QHWERSFTW 766
           T+ QHW R  TW
Sbjct: 18  TQAQHWSRGNTW 29


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 217,292
Number of Sequences: 438
Number of extensions: 4868
Number of successful extensions: 15
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 15
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 15
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 26096055
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)