Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P06_pT_D07
         (737 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.             27   0.18 
DQ667183-1|ABG75735.1|  463|Apis mellifera GABA-gated ion channe...    24   1.3  
AY703685-1|AAU12681.1|  200|Apis mellifera abdominal-A protein.        23   2.3  
AY739659-1|AAU85298.1|  288|Apis mellifera hyperpolarization-act...    22   6.9  
AY739658-1|AAU85297.1|  664|Apis mellifera hyperpolarization-act...    22   6.9  
AY280848-1|AAQ16312.1|  632|Apis mellifera hyperpolarization-act...    22   6.9  

>AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.
          Length = 1598

 Score = 27.1 bits (57), Expect = 0.18
 Identities = 13/40 (32%), Positives = 21/40 (52%)
 Frame = -3

Query: 729  SRTNRSSENSQNDSTRRDAAAVTAQEHDGVAQSGQGQPTL 610
            SR     E+S  DST+ D ++   + H+G  Q  + + TL
Sbjct: 1404 SRAGSRDEDSTRDSTKLDRSSREREVHNGGQQEDRDRKTL 1443


>DQ667183-1|ABG75735.1|  463|Apis mellifera GABA-gated ion channel
           protein.
          Length = 463

 Score = 24.2 bits (50), Expect = 1.3
 Identities = 9/17 (52%), Positives = 12/17 (70%)
 Frame = -1

Query: 419 NHTNISSLFDRCLQQFD 369
           NH+NIS L D  L+ +D
Sbjct: 2   NHSNISELLDNLLRGYD 18


>AY703685-1|AAU12681.1|  200|Apis mellifera abdominal-A protein.
          Length = 200

 Score = 23.4 bits (48), Expect = 2.3
 Identities = 9/20 (45%), Positives = 11/20 (55%)
 Frame = -3

Query: 183 DGMLDSYHEAHHQQSLKKNA 124
           D ML  YH+  H Q L  +A
Sbjct: 3   DSMLPKYHQQFHHQQLFSSA 22


>AY739659-1|AAU85298.1|  288|Apis mellifera
           hyperpolarization-activated ion channelvariant T
           protein.
          Length = 288

 Score = 21.8 bits (44), Expect = 6.9
 Identities = 9/22 (40%), Positives = 14/22 (63%)
 Frame = +1

Query: 592 FSMDM*QCWLALSGLSDTIMFL 657
           F+ D+   W+A + LSDTI  +
Sbjct: 113 FNDDLSTRWIAFNCLSDTIFLI 134


>AY739658-1|AAU85297.1|  664|Apis mellifera
           hyperpolarization-activated ion channelvariant L
           protein.
          Length = 664

 Score = 21.8 bits (44), Expect = 6.9
 Identities = 9/22 (40%), Positives = 14/22 (63%)
 Frame = +1

Query: 592 FSMDM*QCWLALSGLSDTIMFL 657
           F+ D+   W+A + LSDTI  +
Sbjct: 113 FNDDLSTRWIAFNCLSDTIFLI 134


>AY280848-1|AAQ16312.1|  632|Apis mellifera
           hyperpolarization-activated ion channel protein.
          Length = 632

 Score = 21.8 bits (44), Expect = 6.9
 Identities = 9/22 (40%), Positives = 14/22 (63%)
 Frame = +1

Query: 592 FSMDM*QCWLALSGLSDTIMFL 657
           F+ D+   W+A + LSDTI  +
Sbjct: 113 FNDDLSTRWIAFNCLSDTIFLI 134


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 183,968
Number of Sequences: 438
Number of extensions: 3459
Number of successful extensions: 8
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 23023035
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)