Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P06_pT_D01
         (829 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC959.09c |apc5|SPAP32A8.01c|anaphase-promoting complex subuni...    27   2.5  
SPBC3B9.16c |nup120||nucleoporin Nup120|Schizosaccharomyces pomb...    27   2.5  
SPBC1105.15c |htd2||3-hydroxyacyl-ACP dehydratase Htd2 |Schizosa...    26   5.7  
SPAC227.13c |isu1||mitochondrial iron-sulfur cluster assembly sc...    26   7.5  

>SPAC959.09c |apc5|SPAP32A8.01c|anaphase-promoting complex subunit
           Apc5 |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 737

 Score = 27.5 bits (58), Expect = 2.5
 Identities = 16/47 (34%), Positives = 23/47 (48%)
 Frame = +2

Query: 656 FPSKLKTNAHHMHYNNPYNTSNLPHGMRLLLKTSLLEIRGRRLEHCI 796
           FP  LKTN+   ++   Y T   PH + L L   L   R  + +HC+
Sbjct: 6   FPIPLKTNSSKKNF---YTTFLTPHKLTLCLLIELYAHRIIQPQHCV 49


>SPBC3B9.16c |nup120||nucleoporin Nup120|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 1136

 Score = 27.5 bits (58), Expect = 2.5
 Identities = 21/69 (30%), Positives = 34/69 (49%)
 Frame = +2

Query: 2   NNMVGQIF*NYYVVLYIKNCSIKY*N*SLGLSTNKLKQQLKVSLIIQLHYAFPYSTEHML 181
           N ++  IF + Y VL +   S+ Y    L LSTN+  + +++S  I    +FPY T    
Sbjct: 235 NTIISMIFLSTYNVLVM--LSLDYKLKVLDLSTNQCVETIELSQTILPLQSFPYLTSDHT 292

Query: 182 FYLPMFIYY 208
               + +YY
Sbjct: 293 TNSFIALYY 301


>SPBC1105.15c |htd2||3-hydroxyacyl-ACP dehydratase Htd2
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 300

 Score = 26.2 bits (55), Expect = 5.7
 Identities = 18/45 (40%), Positives = 25/45 (55%), Gaps = 4/45 (8%)
 Frame = +2

Query: 644 VFIFFPSKLKTNAHHMHYNNPYNT--SNLPHGM--RLLLKTSLLE 766
           + +F  S L  NAH +H+N  Y T   N P+ +    LL TS+LE
Sbjct: 194 IMVFRYSALMFNAHMIHWNATYATKSENYPNLVLPGPLLVTSMLE 238


>SPAC227.13c |isu1||mitochondrial iron-sulfur cluster assembly
           scaffold protein Isu1|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 192

 Score = 25.8 bits (54), Expect = 7.5
 Identities = 9/14 (64%), Positives = 9/14 (64%)
 Frame = +2

Query: 692 HYNNPYNTSNLPHG 733
           HYNNP N   LP G
Sbjct: 61  HYNNPRNVGTLPKG 74


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,255,784
Number of Sequences: 5004
Number of extensions: 65944
Number of successful extensions: 125
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 123
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 125
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 406444570
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)