Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P06_pT_D01
         (829 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U64609-5|AAB04602.2|  331|Caenorhabditis elegans Serpentine rece...    34   0.14 
Z82051-3|CAB04817.1|  337|Caenorhabditis elegans Hypothetical pr...    29   4.1  
Z81453-4|CAB03794.1|  283|Caenorhabditis elegans Hypothetical pr...    28   9.4  
Z79752-6|CAB02080.2|  423|Caenorhabditis elegans Hypothetical pr...    28   9.4  

>U64609-5|AAB04602.2|  331|Caenorhabditis elegans Serpentine
           receptor, class m protein1 protein.
          Length = 331

 Score = 33.9 bits (74), Expect = 0.14
 Identities = 13/43 (30%), Positives = 28/43 (65%)
 Frame = +2

Query: 95  STNKLKQQLKVSLIIQLHYAFPYSTEHMLFYLPMFIYYLFTVQ 223
           STN +K Q ++++++ + +  P+ T H+ FY+  F+  LF ++
Sbjct: 236 STNSMKSQQQLNMVLMVQFILPFLTIHIPFYV-SFLMPLFRIE 277


>Z82051-3|CAB04817.1|  337|Caenorhabditis elegans Hypothetical
           protein T23D5.6 protein.
          Length = 337

 Score = 29.1 bits (62), Expect = 4.1
 Identities = 10/33 (30%), Positives = 19/33 (57%)
 Frame = +2

Query: 209 LFTVQ*YKTMKLLKINWFSNENLLNIFRSLNDS 307
           ++ +  Y+     ++NWF N  +L IFR  ++S
Sbjct: 304 MYVITDYRRAFQCELNWFENSKILKIFRCCDES 336


>Z81453-4|CAB03794.1|  283|Caenorhabditis elegans Hypothetical
           protein B0250.6 protein.
          Length = 283

 Score = 27.9 bits (59), Expect = 9.4
 Identities = 20/82 (24%), Positives = 35/82 (42%), Gaps = 2/82 (2%)
 Frame = -2

Query: 468 LCIRTSFVRLCLKLYICYCHFREYFRFKWRHGISISLYYNLASVK--TSL*FKDKPESFK 295
           + + T+ + +   + ICY +F       WR  I ++L+  L   +    L +       K
Sbjct: 4   IAVLTTLISILFAITICYLNFLLLISIFWRKRIPVNLHMMLTYCRFGVDLVYTIVLLILK 63

Query: 294 LLKILSRFSFENQFIFNNFIVL 229
           +  +L+R S  N FI  N   L
Sbjct: 64  IYYMLTRIS--NDFIIKNLYFL 83


>Z79752-6|CAB02080.2|  423|Caenorhabditis elegans Hypothetical
           protein D2005.6 protein.
          Length = 423

 Score = 27.9 bits (59), Expect = 9.4
 Identities = 10/35 (28%), Positives = 19/35 (54%)
 Frame = -2

Query: 468 LCIRTSFVRLCLKLYICYCHFREYFRFKWRHGISI 364
           +C R  ++  C+  +I +C F   F   W +G+S+
Sbjct: 388 VCHRAEWIIACILAFINFCVFVVDFVLSWMNGVSM 422


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,722,374
Number of Sequences: 27780
Number of extensions: 357242
Number of successful extensions: 923
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 902
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 923
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 2050970610
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)