Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P06_pT_C23
         (852 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC1604.11 |atp17||F0 ATPase subunit F|Schizosaccharomyces pomb...    27   4.5  
SPCC23B6.03c |tel1||ATM checkpoint kinase|Schizosaccharomyces po...    27   4.5  
SPBC1604.05 |pgi1||glucose-6-phosphate isomerase |Schizosaccharo...    26   7.8  

>SPBC1604.11 |atp17||F0 ATPase subunit F|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 96

 Score = 26.6 bits (56), Expect = 4.5
 Identities = 14/30 (46%), Positives = 18/30 (60%), Gaps = 2/30 (6%)
 Frame = +1

Query: 283 GQNPRTNHRSFF-WYYFSLLGK-ARGSKLI 366
           G  P+ +  SFF WYY   LGK A G+ L+
Sbjct: 42  GPAPKKSSNSFFSWYYKKYLGKNASGAPLL 71


>SPCC23B6.03c |tel1||ATM checkpoint kinase|Schizosaccharomyces
            pombe|chr 3|||Manual
          Length = 2812

 Score = 26.6 bits (56), Expect = 4.5
 Identities = 11/31 (35%), Positives = 18/31 (58%)
 Frame = +1

Query: 142  CLSSAFVDKLIFMVVLLRNNRQSVSFRCTKS 234
            C S  F+     ++++LR  RQ +S  CT+S
Sbjct: 1355 CFSDPFITSNYLVMIVLRIARQLLSIPCTQS 1385


>SPBC1604.05 |pgi1||glucose-6-phosphate isomerase
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 550

 Score = 25.8 bits (54), Expect = 7.8
 Identities = 21/60 (35%), Positives = 31/60 (51%), Gaps = 2/60 (3%)
 Frame = +1

Query: 256 NSVTCDVIWGQNPRTNHRSFFWYYFSLLGKARGSKLIQP--LTLDRAHNTINNHM*HHAL 429
           N  T  ++WG+ P TN +  F   F L+   +G+KLI    L    +HN I+N+  H  L
Sbjct: 377 NYTTGKILWGE-PGTNSQHSF---FQLI--HQGTKLIPADFLIPIESHNPIDNNKHHRML 430


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,076,103
Number of Sequences: 5004
Number of extensions: 57826
Number of successful extensions: 105
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 102
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 105
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 422462090
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)