Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P06_pT_C20
         (818 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

03_02_0256 + 6899424-6899876,6900084-6900163,6900475-6900820           33   0.36 
05_05_0017 + 21546434-21546841                                         31   0.83 
06_01_0420 + 2998269-2999195                                           31   1.5  
01_03_0076 - 12241408-12241545,12241719-12241790,12242173-122422...    30   2.5  
02_05_0600 - 30273080-30274692,30274709-30274949                       29   3.4  
01_01_0489 + 3608720-3608811,3609326-3609431,3609518-3609581,360...    29   3.4  
09_04_0430 + 17502387-17503505                                         28   7.8  
07_01_0990 - 8354014-8354397,8354569-8354697,8354830-8355144,835...    28   7.8  

>03_02_0256 + 6899424-6899876,6900084-6900163,6900475-6900820
          Length = 292

 Score = 32.7 bits (71), Expect = 0.36
 Identities = 17/42 (40%), Positives = 22/42 (52%)
 Frame = +2

Query: 659 ETRAMMGLPLPSTASAAPRMKSTCPPKPEYMRVPIESAHICP 784
           E RA+   P P   S+A    S  PP P YM++P  +  ICP
Sbjct: 211 ELRALKFAPPPP--SSAAHQPSPAPPAPFYMQLPAATLTICP 250


>05_05_0017 + 21546434-21546841
          Length = 135

 Score = 31.5 bits (68), Expect = 0.83
 Identities = 16/43 (37%), Positives = 24/43 (55%)
 Frame = -1

Query: 818 PRSTPASRWTSPDRYAPTLSVPACTPVSVGRLTSSAALRRLWT 690
           P S+PA   T+P   AP  + PA +P + G+ + +AA   L T
Sbjct: 76  PSSSPAGATTTPAPAAPAATAPAPSPEADGKSSGAAAAPPLMT 118


>06_01_0420 + 2998269-2999195
          Length = 308

 Score = 30.7 bits (66), Expect = 1.5
 Identities = 12/39 (30%), Positives = 21/39 (53%)
 Frame = -2

Query: 643 REQNRAYAQSRSWCGDDSGSRALRGHRTRDSLFIRXNPQ 527
           R + R   + R+ CG++ G  A+RG R   +  +R  P+
Sbjct: 264 RRRRREEMERRAMCGEELGRMAVRGSRMPSAKMVRTRPE 302


>01_03_0076 -
           12241408-12241545,12241719-12241790,12242173-12242289,
           12243307-12245127,12245361-12245810
          Length = 865

 Score = 29.9 bits (64), Expect = 2.5
 Identities = 15/40 (37%), Positives = 21/40 (52%)
 Frame = +2

Query: 677 GLPLPSTASAAPRMKSTCPPKPEYMRVPIESAHICPVRST 796
           G P P T SAA + + + PP P     P+  A + P R+T
Sbjct: 39  GSPSPGTGSAAAQAQFSTPPGPPVFSSPLRPAAV-PFRAT 77


>02_05_0600 - 30273080-30274692,30274709-30274949
          Length = 617

 Score = 29.5 bits (63), Expect = 3.4
 Identities = 16/48 (33%), Positives = 23/48 (47%)
 Frame = -1

Query: 794 WTSPDRYAPTLSVPACTPVSVGRLTSSAALRRLWTVKANPS*LSSPTP 651
           W S    +PT  +P+  P  V   T+    RR W   ++P+ L SP P
Sbjct: 473 WASTS--SPT-GLPSPPPTGVSACTAGLLCRRCWASTSSPTGLPSPLP 517


>01_01_0489 +
           3608720-3608811,3609326-3609431,3609518-3609581,
           3609905-3609965,3610017-3610144,3610236-3610385,
           3610537-3610791,3611060-3611265,3611469-3611696,
           3612161-3612259
          Length = 462

 Score = 29.5 bits (63), Expect = 3.4
 Identities = 17/39 (43%), Positives = 22/39 (56%)
 Frame = -3

Query: 687 KGKPIIALVSNTKKGESKIVPTLKVGAGVVTTRAHVHYV 571
           KG+P+  LV    KG SK  P+L    G++ T A VH V
Sbjct: 239 KGQPMARLVGRLVKGSSKPHPSLPARGGLLRT-APVHEV 276


>09_04_0430 + 17502387-17503505
          Length = 372

 Score = 28.3 bits (60), Expect = 7.8
 Identities = 11/32 (34%), Positives = 16/32 (50%)
 Frame = +2

Query: 683 PLPSTASAAPRMKSTCPPKPEYMRVPIESAHI 778
           P P   +AAP ++   PP P +  V +   HI
Sbjct: 209 PQPPATAAAPPIEPVAPPSPTFWTVCMSCCHI 240


>07_01_0990 -
           8354014-8354397,8354569-8354697,8354830-8355144,
           8355448-8355573,8356793-8357206
          Length = 455

 Score = 28.3 bits (60), Expect = 7.8
 Identities = 14/46 (30%), Positives = 23/46 (50%)
 Frame = +1

Query: 616 FERRHDFALALLGVGDESYDGFAFTVHSLRSAADEVNLPTETGVHA 753
           + +R   A  ++GVG+E+     + +HS     DE  LP    +HA
Sbjct: 394 YAQRFPAAFFMIGVGNETTMRKVYPLHSPHFVVDEDVLPVGAALHA 439


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,870,620
Number of Sequences: 37544
Number of extensions: 358861
Number of successful extensions: 1140
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 1107
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1138
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2244686244
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)