Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P06_pT_C19
         (876 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB204558-1|BAD89803.1| 1143|Apis mellifera nitric oxide synthase...    26   0.52 
AB161182-1|BAD08344.1| 1040|Apis mellifera metabotropic glutamat...    23   2.8  
AJ780964-1|CAG62942.2|  332|Apis mellifera putative corticotropi...    22   6.5  

>AB204558-1|BAD89803.1| 1143|Apis mellifera nitric oxide synthase
            protein.
          Length = 1143

 Score = 25.8 bits (54), Expect = 0.52
 Identities = 13/33 (39%), Positives = 16/33 (48%)
 Frame = -3

Query: 406  YWHLRRSYIKARPRFGLATVDLFFCSTYNNMIL 308
            +WH R + IK RP      V LFF     N+ L
Sbjct: 983  FWHHRLAEIKRRPDLEYGKVWLFFGCRQRNLDL 1015


>AB161182-1|BAD08344.1| 1040|Apis mellifera metabotropic glutamate
           receptor protein.
          Length = 1040

 Score = 23.4 bits (48), Expect = 2.8
 Identities = 15/62 (24%), Positives = 23/62 (37%)
 Frame = +3

Query: 24  KFLISYELTVLYGLISAKSKSNRYTAKHIKHSRLGLFHRXPETXLHITPSQIFASI*VNI 203
           +F   +  TV+Y  +  K+          KHS        P + L I    +F  I +N 
Sbjct: 725 RFAAGFCFTVVYAALLTKTNRISRIFNASKHSAKRPSFISPRSQLIICSGLVFVQILING 784

Query: 204 TW 209
            W
Sbjct: 785 VW 786


>AJ780964-1|CAG62942.2|  332|Apis mellifera putative corticotropin
           releasing hormone-binding protein protein.
          Length = 332

 Score = 22.2 bits (45), Expect = 6.5
 Identities = 11/27 (40%), Positives = 12/27 (44%)
 Frame = +1

Query: 631 GMLRNQKYSGSHDYTFPGGSTGTYISK 711
           G +R    S  HD    GGS G   SK
Sbjct: 249 GTIRKCDESSPHDQVIIGGSNGLDTSK 275


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 241,292
Number of Sequences: 438
Number of extensions: 5170
Number of successful extensions: 9
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 9
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 28402218
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)