Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P06_pT_C18
         (782 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC926.09c |fas1||fatty acid synthase beta subunit Fas1|Schizos...    27   4.0  
SPCC70.04c |||sequence orphan|Schizosaccharomyces pombe|chr 3|||...    27   4.0  
SPAC3A11.06 |mvp1||sorting nexin Mvp1|Schizosaccharomyces pombe|...    27   4.0  
SPBC27B12.04c |||conserved eukaryotic protein|Schizosaccharomyce...    26   5.3  
SPBC2A9.02 |||NAD dependent epimerase/dehydratase family protein...    25   9.3  
SPAC57A10.12c |ura3||dihydroorotate dehydrogenase Ura3|Schizosac...    25   9.3  
SPBC1604.15 |gpi16||pig-T |Schizosaccharomyces pombe|chr 2|||Manual    25   9.3  

>SPAC926.09c |fas1||fatty acid synthase beta subunit
            Fas1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 2073

 Score = 26.6 bits (56), Expect = 4.0
 Identities = 16/58 (27%), Positives = 30/58 (51%)
 Frame = -1

Query: 503  DTEGKSMSGAVSDSDAKVRDNFVDLISKFAHSLNGEENNTKTNLMGLQPYSEENDQFL 330
            D  G+S  G V+ + ++V  +F D   +F     G++ N    L+ +  Y+ EN Q++
Sbjct: 1865 DELGRSDYGMVAANPSRVSASFTDAALRFIVDHIGQQTNL---LLEIVNYNVENQQYV 1919


>SPCC70.04c |||sequence orphan|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 244

 Score = 26.6 bits (56), Expect = 4.0
 Identities = 17/41 (41%), Positives = 26/41 (63%), Gaps = 4/41 (9%)
 Frame = +1

Query: 541 AGPFILFSYTFISFELSVRASPGRKYDPLLRFP----TYSK 651
           A P +LF+ T  S  LS+   P +++DP+L+FP    TYS+
Sbjct: 55  AKPKLLFTPTKSS--LSIGNFPYKEFDPVLKFPGIHYTYSR 93


>SPAC3A11.06 |mvp1||sorting nexin Mvp1|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 664

 Score = 26.6 bits (56), Expect = 4.0
 Identities = 15/36 (41%), Positives = 20/36 (55%)
 Frame = +1

Query: 199 GNLDNKSPIKFLQRAPVSLSAIPPHKPI*QNLNPLS 306
           GNL ++ P KF   + V  +AI P KP  +  N LS
Sbjct: 222 GNLHSQQPPKFSVDSSVDDNAITPRKPFSKIPNRLS 257


>SPBC27B12.04c |||conserved eukaryotic protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 817

 Score = 26.2 bits (55), Expect = 5.3
 Identities = 23/92 (25%), Positives = 39/92 (42%)
 Frame = -1

Query: 578 DMKVYENKMKGPAHGDELAYIFEPLDTEGKSMSGAVSDSDAKVRDNFVDLISKFAHSLNG 399
           D+  + N +KGPAH       FE  D   K +S +  D      DNF+ L  +  + +  
Sbjct: 420 DLHEFYNSVKGPAHS------FETEDPVLKFVSQSYDDL-FPYMDNFIQLAVQLFYHI-- 470

Query: 398 EENNTKTNLMGLQPYSEENDQFLKINDGIKTD 303
              + K N + ++ +S  +    +I D    D
Sbjct: 471 ---SKKVNCLYVEAFSSSDAVLQRIQDNAVVD 499


>SPBC2A9.02 |||NAD dependent epimerase/dehydratase family
           protein|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 295

 Score = 25.4 bits (53), Expect = 9.3
 Identities = 13/44 (29%), Positives = 21/44 (47%)
 Frame = -1

Query: 680 SAGGPAYLYSFEYVGNLSKGSYFLPGLALTDNSNDMKVYENKMK 549
           +AGG  Y+ + E +  L KG     G+  T   +D  +Y+   K
Sbjct: 42  AAGGTPYIGTLEDLDTLKKGVAQCDGVIHTAFVHDFSIYQEACK 85


>SPAC57A10.12c |ura3||dihydroorotate dehydrogenase
           Ura3|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 443

 Score = 25.4 bits (53), Expect = 9.3
 Identities = 16/31 (51%), Positives = 20/31 (64%)
 Frame = -2

Query: 682 GAQGVPLIYIALNTLGTLVKGHIFYLDLPLL 590
           G  G PL  IALNTL TL K H+   D+P++
Sbjct: 355 GLSGPPLKPIALNTLRTLRK-HL-SSDIPII 383


>SPBC1604.15 |gpi16||pig-T |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 545

 Score = 25.4 bits (53), Expect = 9.3
 Identities = 13/38 (34%), Positives = 21/38 (55%)
 Frame = +1

Query: 544 GPFILFSYTFISFELSVRASPGRKYDPLLRFPTYSKLY 657
           G  +LF+Y+ +SF L+  A+    YD  L   ++S  Y
Sbjct: 5   GCLLLFAYSLLSFSLTA-ATIDETYDESLFIKSFSSRY 41


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,295,004
Number of Sequences: 5004
Number of extensions: 71823
Number of successful extensions: 179
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 177
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 179
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 379359666
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)