Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P06_pT_C18
(782 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
12_01_0237 + 1782593-1782778,1784942-1784996,1785086-1787028,178... 34 0.15
11_01_0240 + 1852186-1852371,1854183-1854237,1854391-1856267,185... 33 0.26
11_01_0361 + 2772193-2772334,2773457-2773587,2773872-2773985,277... 31 1.4
03_03_0184 + 15228045-15228405,15228725-15228883,15228984-152292... 30 2.4
01_06_0642 + 30811708-30811768,30812256-30812305,30812455-308129... 30 2.4
05_01_0520 - 4492182-4492780,4496886-4497951 28 7.3
02_02_0146 - 7171656-7172044,7172383-7175008 28 7.3
02_01_0091 + 646299-649082 28 7.3
04_01_0590 + 7793958-7794148,7794826-7794967,7799292-7800548 28 9.6
02_05_1007 + 33452774-33452993,33453028-33453122,33453208-334533... 28 9.6
02_01_0607 - 4549248-4549290,4550193-4550337,4550438-4551185,455... 28 9.6
>12_01_0237 +
1782593-1782778,1784942-1784996,1785086-1787028,
1787103-1787261,1787432-1787603,1787705-1788003,
1788278-1788583
Length = 1039
Score = 33.9 bits (74), Expect = 0.15
Identities = 21/63 (33%), Positives = 30/63 (47%)
Frame = -1
Query: 533 DELAYIFEPLDTEGKSMSGAVSDSDAKVRDNFVDLISKFAHSLNGEENNTKTNLMGLQPY 354
DELA I D++ M G V KVR S F H + E +T+ N+ G+ Y
Sbjct: 103 DELALITSKHDSKALKMHGGVDGISIKVR-------SSFDHGIYASELDTRQNIYGVNRY 155
Query: 353 SEE 345
+E+
Sbjct: 156 AEK 158
>11_01_0240 +
1852186-1852371,1854183-1854237,1854391-1856267,
1856342-1856500,1856692-1856863,1856965-1857263,
1857539-1857844
Length = 1017
Score = 33.1 bits (72), Expect = 0.26
Identities = 26/102 (25%), Positives = 43/102 (42%)
Frame = -1
Query: 650 FEYVGNLSKGSYFLPGLALTDNSNDMKVYENKMKGPAHGDELAYIFEPLDTEGKSMSGAV 471
F +V +L + S + T + +Y + DELA I D++ M G V
Sbjct: 42 FRWVPDLDRRSLDKAKVRSTQEKIRVALYVQQAALIFSDDELALITSKHDSKALKMHGGV 101
Query: 470 SDSDAKVRDNFVDLISKFAHSLNGEENNTKTNLMGLQPYSEE 345
KVR S F H + + +T+ N+ G+ Y+E+
Sbjct: 102 DGISKKVR-------SSFDHGICASDLDTRQNIYGVNRYAEK 136
>11_01_0361 +
2772193-2772334,2773457-2773587,2773872-2773985,
2774303-2774459,2774577-2775000,2775238-2776030,
2776182-2776241,2776952-2777593
Length = 820
Score = 30.7 bits (66), Expect = 1.4
Identities = 19/63 (30%), Positives = 33/63 (52%), Gaps = 3/63 (4%)
Frame = -1
Query: 479 GAVSDSDAKVRDNFVDLISKFAHSLNGEENNTKTNLMG---LQPYSEENDQFLKINDGIK 309
GA S + K+++ F+D ++ +H+L G ++ N G LQ S E + K +GI
Sbjct: 153 GAGSSREHKIQNGFIDGMNTKSHALKGNDDAPSGNACGDSELQVLSTEKNVRSKFLNGIT 212
Query: 308 TDK 300
+ K
Sbjct: 213 SAK 215
>03_03_0184 +
15228045-15228405,15228725-15228883,15228984-15229258,
15229346-15229594,15229670-15229788,15229874-15229972,
15230068-15230176,15230281-15230421
Length = 503
Score = 29.9 bits (64), Expect = 2.4
Identities = 23/80 (28%), Positives = 36/80 (45%), Gaps = 2/80 (2%)
Frame = -1
Query: 731 TGDALFNFPAYQSVRQWSAGGPAYLYSFEYVGNLSKGSYFLPGL--ALTDNSNDMKVYEN 558
TGD AY + W P Y ++ S G +++P L A+ N+N V
Sbjct: 200 TGDTSTAADAYTFLTNWLERFPEYKGRDFFITGESYGGHYIPQLANAILSNNNITNVTII 259
Query: 557 KMKGPAHGDELAYIFEPLDT 498
+KG A G+ AY+ + +T
Sbjct: 260 NLKGVAIGN--AYLDDSTNT 277
>01_06_0642 +
30811708-30811768,30812256-30812305,30812455-30812926,
30813237-30813596,30813694-30814101,30814383-30814453,
30814553-30814629,30814741-30814888,30815878-30816039,
30816119-30816304
Length = 664
Score = 29.9 bits (64), Expect = 2.4
Identities = 14/27 (51%), Positives = 15/27 (55%)
Frame = -1
Query: 731 TGDALFNFPAYQSVRQWSAGGPAYLYS 651
T DA F P Y VR +SAG Y YS
Sbjct: 313 TSDAFFISPGYHPVRLFSAGSHGYPYS 339
>05_01_0520 - 4492182-4492780,4496886-4497951
Length = 554
Score = 28.3 bits (60), Expect = 7.3
Identities = 22/75 (29%), Positives = 32/75 (42%), Gaps = 7/75 (9%)
Frame = -1
Query: 548 GPAHGDELAYIFEPLDTEGKS-----MSGAVSDSDAKVRDNFVDLISKFAHSLNGEENNT 384
G H + Y+ +D EG S M + D D V D FVDL + +N + +
Sbjct: 455 GMLHLITMGYVVAVVDVEGNSWRTIPMPQTLDDPDCNVDDGFVDLSQGRLYFVNTDRYDL 514
Query: 383 KTNL--MGLQPYSEE 345
+L LQ YS +
Sbjct: 515 YNSLSVWVLQDYSSD 529
>02_02_0146 - 7171656-7172044,7172383-7175008
Length = 1004
Score = 28.3 bits (60), Expect = 7.3
Identities = 14/40 (35%), Positives = 21/40 (52%)
Frame = -1
Query: 662 YLYSFEYVGNLSKGSYFLPGLALTDNSNDMKVYENKMKGP 543
YLY G++ KG LP L D++++ NK+ GP
Sbjct: 317 YLYYNNLTGSIPKGVSMLPNLT------DIRLFNNKLSGP 350
>02_01_0091 + 646299-649082
Length = 927
Score = 28.3 bits (60), Expect = 7.3
Identities = 19/61 (31%), Positives = 25/61 (40%)
Frame = +1
Query: 118 SLFPPRLPNPKLFKGLSTGNLSTGKGIGNLDNKSPIKFLQRAPVSLSAIPPHKPI*QNLN 297
S F P L +P L L +GNL P + + PV+ + PPH P N
Sbjct: 36 SSFAPALVSPDFHLFLKGTKLIADAKVGNLP-VGPGESISFIPVNAKSAPPHPPSSSAPN 94
Query: 298 P 300
P
Sbjct: 95 P 95
>04_01_0590 + 7793958-7794148,7794826-7794967,7799292-7800548
Length = 529
Score = 27.9 bits (59), Expect = 9.6
Identities = 11/32 (34%), Positives = 19/32 (59%)
Frame = +2
Query: 104 GCLMVVCFLRDCLIPNCSKDYLPATCPLARVS 199
G + ++CF L P+C +D+ P CP +V+
Sbjct: 372 GHVAIMCFT---LCPHCEEDHPPGECPTRKVT 400
>02_05_1007 +
33452774-33452993,33453028-33453122,33453208-33453329,
33453392-33453694,33454657-33454918,33455039-33455140,
33455931-33457151,33457250-33457342
Length = 805
Score = 27.9 bits (59), Expect = 9.6
Identities = 11/23 (47%), Positives = 16/23 (69%)
Frame = +1
Query: 52 VGFLPSXPGTSMFLFPPRLFNGS 120
+ F+ S P S+ L+PPRL +GS
Sbjct: 273 ISFISSGPRRSLDLYPPRLSSGS 295
>02_01_0607 -
4549248-4549290,4550193-4550337,4550438-4551185,
4551504-4551980,4552066-4552374
Length = 573
Score = 27.9 bits (59), Expect = 9.6
Identities = 18/59 (30%), Positives = 28/59 (47%)
Frame = -1
Query: 557 KMKGPAHGDELAYIFEPLDTEGKSMSGAVSDSDAKVRDNFVDLISKFAHSLNGEENNTK 381
+ +GP D+L IF G S S + S + D+ V + K A ++N E+N K
Sbjct: 120 RKQGPKFLDDLHIIFGKSHVSGASASCPGNVSSDEASDDDVAEVPKPAETVNPEKNKRK 178
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,687,448
Number of Sequences: 37544
Number of extensions: 475444
Number of successful extensions: 1117
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 1079
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1115
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2103658836
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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