Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P06_pT_C17
         (874 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC211.05 |||splicing factor 3B|Schizosaccharomyces pombe|chr 2...   102   6e-23
SPBC3H7.14 |mug176||BRCT domain protein|Schizosaccharomyces pomb...    28   1.5  
SPAC1F7.04 |rho1||Rho family GTPase Rho1|Schizosaccharomyces pom...    26   6.1  

>SPBC211.05 |||splicing factor 3B|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 85

 Score =  102 bits (245), Expect = 6e-23
 Identities = 41/80 (51%), Positives = 59/80 (73%)
 Frame = -2

Query: 777 MGERYNIHSQLEHLQSKYIGTGHADTTKYEWLMNQHRDSCCSYMGHPDLLSYFAIVENES 598
           M +R    ++LE LQ++Y+G G+A TTKYEW++NQHRD+  S +GHP LL+Y A    E 
Sbjct: 1   MADRLRSQAKLEQLQARYVGVGNAFTTKYEWMVNQHRDTLSSVVGHPPLLAYMATALGEP 60

Query: 597 KARVKFNLMERMLQPCGPPP 538
           + +V+ NL+E+M+ PCGPPP
Sbjct: 61  RVQVRKNLLEKMIMPCGPPP 80


>SPBC3H7.14 |mug176||BRCT domain protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 406

 Score = 28.3 bits (60), Expect = 1.5
 Identities = 11/30 (36%), Positives = 18/30 (60%)
 Frame = +1

Query: 604 IFYDRKVTQQIRMTHVAAARVAMLVHKPFI 693
           +F   K+T  + MTH+ +A+   L +KP I
Sbjct: 364 LFSSFKITTDLEMTHLESAKKKYLAYKPLI 393


>SPAC1F7.04 |rho1||Rho family GTPase Rho1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 202

 Score = 26.2 bits (55), Expect = 6.1
 Identities = 12/38 (31%), Positives = 20/38 (52%)
 Frame = +1

Query: 595 FRFIFYDRKVTQQIRMTHVAAARVAMLVHKPFIFCSVG 708
           ++++    K  + +R    +A R AML HKP +  S G
Sbjct: 155 YKYLECSAKTNEGVREVFESATRAAMLKHKPKVKPSSG 192


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,239,131
Number of Sequences: 5004
Number of extensions: 64416
Number of successful extensions: 132
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 130
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 132
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 436477420
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)